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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002979 ID=TCONS_00002979|Name=TCONS_00002979|organism=Clytia hemisphaerica|type=transcript|length=940bp
gaaaaaataaaaaagataataagtTGAAGATGAGGAAAGTACTACAACAA
ATATCAGTTCTTCTAATCGTTGGATACTGTATGCCATTTAGATGTTTAAA
TGCAATGTCAAATACTGGTAACGTTGGAGGACTGAAAACCacaacaacga
caacgaccATTGACCCTGGAAGCTCTGTTGACGAGCTCTGCAAGAAACAA
CCAGAgttttgcaaaaagcttaaaatgttAGCAGCAATgcaaaaatcaaa
gaaacaCTTGCTGTCAAGTAACATTCTTGATGCGATCAAAAACAAGACGA
AATCGATGCAACCGGTAACAACAATGTCACCCTCAATCATGCAAAAAGCT
AATGATgtgaaaacaaaattgaaaaaatctatGAGGCTAATGCGTTTAAA
AAGCTTAGGCTCGAAACTTGTAATAACgtgatattttgaccaaaagcaTA
GCATTAGAGATGAAAGGCTATTGACAGATGTCCAAATTTGATGGACAAAA
TAACGCATCGGAAAATGTCAAGGATGACAATGGAAAAAATGTGTTCAAAA
TGTCACCAGCGTGTGGGCTGCACTAACAAATTTATGTCGAAAAGTGGTTT
TTGACACTTATCACATTCCTTCCTTCATGATTCACGAAATTCATGTGCCT
TCGGTGTAGCTTTCTATTAAACTCGCCATCAAAAGATCTGACAGACTTGA
GTAAGAATCAATTGAATGAGCTAAAGGGCTTACGCCAACGAGGAAGAAAA
TATATTACTGTTTATAACAGGAAGAACATCTCAGCCTAAAGATGTCCGCC
TTTTTATTCTAGTCTAGTCAATCATTGTTTATATATGGTCAATTTTACAA
ATAGGCCTAAGGAGCTTGCGTAAGCAATCTCAATGGACGAAAATTCCTTA
GACAAATACAACAGTAACttccctcttttttcttatCATC Run BLAST on NCBI protein sequence of TCONS_00002979-protein >TCONS_00002979-protein ID=TCONS_00002979-protein|Name=TCONS_00002979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
KNKKDNKLKMRKVLQQISVLLIVGYCMPFRCLNAMSNTGNVGGLKTTTTT
TTIDPGSSVDELCKKQPEFCKKLKMLAAMQKSKKHLLSSNILDAIKNKTK
SMQPVTTMSPSIMQKANDVKTKLKKSMRLMRLKSLGSKLVIT Run BLAST on NCBI transcript from alignment at sc0000024:131488..132852- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002979 ID=TCONS_00002979|Name=TCONS_00002979|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at sc0000024:131488..132852- (Clytia hemisphaerica)
GAAAAAATAAAAAAGATAATAAGTTGAAGATGAGGAAAGTACTACAACAA
ATATCAGTTCTTCTAATCGTTGGATACTGTATGCCATTTAGATGTTTAAA
TGCAATGTCAAATACTGGTAACGTTGGAGGACTGAAAACCACAACAACGA
CAACGACCATTGACCCTGTAAGTTGCTATTCATGTCTTATTTTCAAAGAA
TTCATTTGATCATAACCACAACCCCTTCTCACAGAGTCGGTAGGAATTTT
TCAGCAAGTGGTGATAAAAAACAAGGACTGAAACTCGATGGGAATTNATA
GGATTTTTTCAGCAAGTGGTGATAAAAAACAAGGACTGAAACTCGATGTG
GATTGATATTCTCATGTTTTTACGTGTACGGATTTTAATTCCATTGTTAT
TAAGTTAGAAAACTCTTTGGGGATGTAGGAAATATGATTTCCATTGTTTA
CGATTTTTCGGATTTTTTTTCCAGTTGGGCGGGGGTCCCATCGGTGCCCA
TCGGGGCGTGTGTTTTGAAAGACAAGTCTGTGAAATAATCTAATGGTGGT
CTTTCTTTATCCTACTTGTTTATGTTTATTCTTCTCTTTCAGGGAAGCTC
TGTTGACGAGCTCTGCAAGAAACAACCAGAGTTTTGCAAAAAGCTTAAAA
TGTTAGCAGCAATGCAAAAATCAAAGAAACACTTGCTGTCAAGTAACATT
CTTGATGCGATCAAAAACAAGACGAAATCGATGCAACCGGTAACAACAAT
GTCACCCTCAATCATGCAAAAAGCTAATGATGTGAAAACAAAATTGAAAA
AATCTATGAGGCTAATGCGTTTAAAAAGCTTAGGCTCGAAACTTGTAATA
ACGTGATATTTTGACCAAAAGCATAGCATTAGAGATGAAAGGCTATTGAC
AGATGTCCAAATTTGATGGACAAAATAACGCATCGGAAAATGTCAAGGAT
GACAATGGAAAAAATGTGTTCAAAATGTCACCAGCGTGTGGGCTGCACTA
ACAAATTTATGTCGAAAAGTGGTTTTTGACACTTATCACATTCCTTCCTT
CATGATTCACGAAATTCATGTGCCTTCGGTGTAGCTTTCTATTAAACTCG
CCATCAAAAGATCTGACAGACTTGAGTAAGAATCAATTGAATGAGCTAAA
GGGCTTACGCCAACGAGGAAGAAAATATATTACTGTTTATAACAGGAAGA
ACATCTCAGCCTAAAGATGTCCGCCTTTTTATTCTAGTCTAGTCAATCAT
TGTTTATATATGGTCAATTTTACAAATAGGCCTAAGGAGCTTGCGTAAGC
AATCTCAATGGACGAAAATTCCTTAGACAAATACAACAGTAACTTCCCTC
TTTTTTCTTATCATC Coding sequence (CDS) from alignment at sc0000024:131488..132852- >TCONS_00002979 ID=TCONS_00002979|Name=TCONS_00002979|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000024:131488..132852- (Clytia hemisphaerica)
GGAAGCTCTGTTGACGAGCTCTGCAAGAAACAACCAGAGTTTTGCAAAAA
GCTTAAAATGTTAGCAGCAATGCAAAAATCAAAGAAACACTTGCTGTCAA
GTAACATTCTTGATGCGATCAAAAACAAGACGAAATCGATGCAACCGGTA
ACAACAATGTCACCCTCAATCATGCAAAAAGCTAATGATGTGAAAACAAA
ATTGAAAAAATCTATGAGGCTAATGCGTTTAAAAAGCTTAGGCTCGAAAC
TTGTAATAACGTGAAAAAATAAAAAAGATAATAAGTTGAAGATGAGGAAA
GTACTACAACAAATATCAGTTCTTCTAATCGTTGGATACTGTATGCCATT
TAGATGTTTAAATGCAATGTCAAATACTGGTAACGTTGGAGGACTGAAAA
CCACAACAACGACAACGACCATTGACCCTGGAAGCTCTGTTGACGAGCTC
TGCAAGAAACAACCAGAGTTTTGCAAAAAGCTTAAAATGTTAGCAGCAAT
GCAAAAATCAAAGAAACACTTGCTGTCAAGTAACATTCTTGATGCGATCA
AAAACAAGACGAAATCGATGCAACCGGTAACAACAATGTCACCCTCAATC
ATGCAAAAAGCTAATGATGTGAAAACAAAATTGAAAAAATCTATGAGGCT
AATGCGTTTAAAAAGCTTAGGCTCGAAACTTGTAATAACGTGAAAAAATA
AAAAAGATAATAAGTTGAAGATGAGGAAAGTACTACAACAAATATCAGTT
CTTCTAATCGTTGGATACTGTATGCCATTTAGATGTTTAAATGCAATGTC
AAATACTGGTAACGTTGGAGGACTGAAAACCACAACAACGACAACGACCA
TTGACCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002979-exon-sc0000024-1575043694:132686..132852 | TCONS_00002979-exon-sc0000024-1575043694:132686..132852 | Clytia hemisphaerica | exon |
| TCONS_00002979-exon-sc0000024-1575043694:131488..132260 | TCONS_00002979-exon-sc0000024-1575043694:131488..132260 | Clytia hemisphaerica | exon |
| TCONS_00002979-exon-sc0000024-1510915933:132686..132852 | TCONS_00002979-exon-sc0000024-1510915933:132686..132852 | Clytia hemisphaerica | exon |
| TCONS_00002979-exon-sc0000024-1510915933:131488..132260 | TCONS_00002979-exon-sc0000024-1510915933:131488..132260 | Clytia hemisphaerica | exon |
| TCONS_00002979-exon-sc0000024-1491911889:132686..132852 | TCONS_00002979-exon-sc0000024-1491911889:132686..132852 | Clytia hemisphaerica | exon |
| TCONS_00002979-exon-sc0000024-1491911889:131488..132260 | TCONS_00002979-exon-sc0000024-1491911889:131488..132260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:131488..132852 - |
Blast
The following BLAST results are available for this feature:
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