TCONS_00002978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002978
Unique NameTCONS_00002978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002978 ID=TCONS_00002978|Name=TCONS_00002978|organism=Clytia hemisphaerica|type=transcript|length=550bp
tgaaaattatggcaaTGTTTATGCTGACTGTATTGATGTCATTTATACAC
GAAGTCGATGGAATGTCAGGTACTGGCAACGCTGGAATGAAAACAACTGC
TGACCCGaacaaaAATACTGGTGATTTATGCAAACAAAATCCATCATGGT
GTACGCATTTCAAGAAGAAGCTCATTTCAGGCGGAGATGCAGCACGTAAA
AAGGCTTTAAGAATGAAAATTGTATCTCAAATTGCGTATtcgaagaaaac
aaagaaaatgcaaCGATTCATGACAGTTAAGTTTTTGAGGCAAAGATCAG
CATTAAGAATCAGCTGAAATATGTGAGCTATCATTCTGCAGGAGCAAAGT
TTATCATGCCGTTTGGATGTCGTTTTTGTTTACGTTACGTATATGAGATA
TCGTGACCTAGTATCAAGACAATCAAAACGCTACACGACACCATGGCCTC
AGGAAAACACGACTCAAAGGGGCAATCGCCTAATTTCCAATTTCTGCTAG
ACAGAATACTGGAAGGAGTTATTCGATATTATCCTGAAATGATGCTATCC
Run BLAST on NCBI

protein sequence of TCONS_00002978-protein

>TCONS_00002978-protein ID=TCONS_00002978-protein|Name=TCONS_00002978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
KIMAMFMLTVLMSFIHEVDGMSGTGNAGMKTTADPNKNTGDLCKQNPSWC
THFKKKLISGGDAARKKALRMKIVSQIAYSKKTKKMQRFMTVKFLRQRSA
LRIS
Run BLAST on NCBI

transcript from alignment at sc0000024:120277..121573-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002978 ID=TCONS_00002978|Name=TCONS_00002978|organism=Clytia hemisphaerica|type=transcript|length=1297bp|location=Sequence derived from alignment at sc0000024:120277..121573- (Clytia hemisphaerica)
TGAAAATTATGGCAATGTTTATGCTGACTGTATTGATGTCATTTATACAC
GAAGTCGATGGAATGTCAGGTACTGGCAACGCTGGAATGAAAACAACTGC
TGACCCGGTAAGTTTTTCATCTGTTCATTTTATTTGGATAAATATAGATA
TAAATAAATATAAATCTGTTTTAGGTTTTTTCAAACTAAATTGTTGAAGA
ACACATTCGAATTTCTTTTGCTACTCGCATGCTTTGTTTATTATCGTAAA
AGTTACATAACTCTACTGAGCTATATTCATGATCTTCATTATGTAATTTT
TCCTATAGAAAACTTTCTAGTTTTTAATCAATTTTCCTCCAACTTAAATT
TGCTACTACTAACAACCCGGGGGGGGGGGTACTTAGGCAAAATGGGTGCT
GGGTATGTGCGAGCCATAAGGGTACCTTTTCTCATTCCTCAAAAGTCTCT
CAAAGGGGTACAAATTCAAAAGTTAGTCTCTGAAAGGGTCCCAAAATCAC
AAAAATCACAAATTTCTCTCTCAAAGGGTCACGATTTCCAAGAATTTTGA
CCAAAATTTGGTGAAAATCAAACCAAAATTTGGAAAAAATGGAAAAAATG
GACCAAAATTTAGGAAAAAGTCTCTCAAAGGATCGATTTTTTTTTTCGGC
TCGGACATACCCGTCACCTCGCGAACCTAGTACCCCCCCCCCCGGGACTA
ACAAAACCCTGGGTGTCTCCGCACGGGCATAACGTCACAATCTCACGATT
ACAGGCTATGCTAAATTGTATACAAACTGTTCTCTAATTTTCCAAATCAC
GGTAAAGTTATTTCGAAAAATAAAAAAATTAATGAAATCAATGTTTTTTT
TTAGAACAAAAATACTGGTGATTTATGCAAACAAAATCCATCATGGTGTA
CGCATTTCAAGAAGAAGCTCATTTCAGGCGGAGATGCAGCACGTAAAAAG
GCTTTAAGAATGAAAATTGTATCTCAAATTGCGTATTCGAAGAAAACAAA
GAAAATGCAACGATTCATGACAGTTAAGTTTTTGAGGCAAAGATCAGCAT
TAAGAATCAGCTGAAATATGTGAGCTATCATTCTGCAGGAGCAAAGTTTA
TCATGCCGTTTGGATGTCGTTTTTGTTTACGTTACGTATATGAGATATCG
TGACCTAGTATCAAGACAATCAAAACGCTACACGACACCATGGCCTCAGG
AAAACACGACTCAAAGGGGCAATCGCCTAATTTCCAATTTCTGCTAGACA
GAATACTGGAAGGAGTTATTCGATATTATCCTGAAATGATGCTATCC

Coding sequence (CDS) from alignment at sc0000024:120277..121573-

>TCONS_00002978 ID=TCONS_00002978|Name=TCONS_00002978|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000024:120277..121573- (Clytia hemisphaerica)
AACAAAAATACTGGTGATTTATGCAAACAAAATCCATCATGGTGTACGCA
TTTCAAGAAGAAGCTCATTTCAGGCGGAGATGCAGCACGTAAAAAGGCTT
TAAGAATGAAAATTGTATCTCAAATTGCGTATTCGAAGAAAACAAAGAAA
ATGCAACGATTCATGACAGTTAAGTTTTTGAGGCAAAGATCAGCATTAAG
AATCAGCTGAAAAATTATGGCAATGTTTATGCTGACTGTATTGATGTCAT
TTATACACGAAGTCGATGGAATGTCAGGTACTGGCAACGCTGGAATGAAA
ACAACTGCTGACCCGAACAAAAATACTGGTGATTTATGCAAACAAAATCC
ATCATGGTGTACGCATTTCAAGAAGAAGCTCATTTCAGGCGGAGATGCAG
CACGTAAAAAGGCTTTAAGAATGAAAATTGTATCTCAAATTGCGTATTCG
AAGAAAACAAAGAAAATGCAACGATTCATGACAGTTAAGTTTTTGAGGCA
AAGATCAGCATTAAGAATCAGCTGAAAAATTATGGCAATGTTTATGCTGA
CTGTATTGATGTCATTTATACACGAAGTCGATGGAATGTCAGGTACTGGC
AACGCTGGAATGAAAACAACTGCTGACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001636XLOC_001636Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002978-proteinTCONS_00002978-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002978-exon-sc0000024-1575043694:121467..121573TCONS_00002978-exon-sc0000024-1575043694:121467..121573Clytia hemisphaericaexon
TCONS_00002978-exon-sc0000024-1575043694:120277..120719TCONS_00002978-exon-sc0000024-1575043694:120277..120719Clytia hemisphaericaexon
TCONS_00002978-exon-sc0000024-1510915933:121467..121573TCONS_00002978-exon-sc0000024-1510915933:121467..121573Clytia hemisphaericaexon
TCONS_00002978-exon-sc0000024-1510915933:120277..120719TCONS_00002978-exon-sc0000024-1510915933:120277..120719Clytia hemisphaericaexon
TCONS_00002978-exon-sc0000024-1491911889:121467..121573TCONS_00002978-exon-sc0000024-1491911889:121467..121573Clytia hemisphaericaexon
TCONS_00002978-exon-sc0000024-1491911889:120277..120719TCONS_00002978-exon-sc0000024-1491911889:120277..120719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:120277..121573 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.101456	0	0	0	0.11087	0	0	0.263018	0.651581	0	1.38581	0.830327	1.65275	1.0634	0.507194	0.624821	2.48163	0.110597	0.115732	0.100592	0	0	0.108452	0	0.0996927	0.855959	0	0.923813	0.235305
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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