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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002976 ID=TCONS_00002976|Name=TCONS_00002976|organism=Clytia hemisphaerica|type=transcript|length=2460bpRun BLAST on NCBI protein sequence of TCONS_00002976-protein >TCONS_00002976-protein ID=TCONS_00002976-protein|Name=TCONS_00002976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp MRFSVLTAFLCMVLALGQSNHGKVIKEKNVEDAISKLESLVEKEVEDDLSRun BLAST on NCBI transcript from alignment at sc0000024:854239..888624+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002976 ID=TCONS_00002976|Name=TCONS_00002976|organism=Clytia hemisphaerica|type=transcript|length=34386bp|location=Sequence derived from alignment at sc0000024:854239..888624+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:854239..888624+ >TCONS_00002976 ID=TCONS_00002976|Name=TCONS_00002976|organism=Clytia hemisphaerica|type=CDS|length=24930bp|location=Sequence derived from alignment at sc0000024:854239..888624+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002976 vs. Swiss-Prot (Human)
Match: BMP1 (Bone morphogenetic protein 1 OS=Homo sapiens GN=BMP1 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 2.720e-20 Identity = 64/178 (35.96%), Postives = 97/178 (54.49%), Query Frame = 2
Query: 626 FNQALNCQDK----PWIVRTDEEEFIQFR-RGDGCESYVGKVTQDPALGGVQPIYLHSNCILQPGKVIHEMMHALGYIHEHMRFDRDQYIKIHKENIIQKFAPQFMKI-PQKYLMTSKKYDLLSIMQYEKNAFARSSELVTIETLDPAFQ-----DKIGQRNQLSKLDLVGLNEYFAC 1126
F QA+ +K ++ RTDE+ +I F R GC SYVG+ GG Q I + NC + G V+HE+ H +G+ HEH R DRD+++ I +ENI F+K+ PQ+ + YD SIM Y +N F+R + ++T+ P ++ IGQR +LSK D+ + + C
Sbjct: 151 FRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRG-----GGPQAISIGKNCD-KFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRG---IFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKC 319 The following BLAST results are available for this feature:
BLAST of TCONS_00002976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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