TCONS_00002967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002967
Unique NameTCONS_00002967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002967 ID=TCONS_00002967|Name=TCONS_00002967|organism=Clytia hemisphaerica|type=transcript|length=2613bp
GAAAATTCCGTTTCCGTTTGGGAGGAACCAGCGGGTGCGAGGAAACTGTT
TTTTCGAAAGAATTCAAGCGCCATCTTTATTCATTTTCTGGTACTCGTGG
TCACACCTCACCCTTCGCTATGATCTTTCGAAGTTAATATTTGATTAAGA
GCGTGTGTCCAGTATTCACGGAAAAGTTCTTTTGTTGACGATTTTTCACC
CGCACATGCTCAGCAAGGTTTGAACGTAGTGAGCAAGCTCAAAGAAATCA
ACGCATCCCAATTTCTACAAGTCTGCGCATCTGAACCTAACAACCAAATA
ACAATCACTTTCTCCATTTTTAGATATTCCTCACAATGGATTTGGATCCC
CACGTCCATCACACGACAGTCAAACTGGAAGAGATGCCTCATGCAGTTCC
TGTCCATCAAGTTACAAGGTCCAATTCTCTCTCCATGACCCACGTTGGAT
CAATGTCTGACGGCCTATCTGATGACCCCTCTTCGCCTGAATCAACAGCT
TTTGATGATACTGATCTTCTTACTGCACCAAGTGTTGGTATGCACGATGA
TGTCACAGATGAAGTCACCGCTCAATTAGCCGCTGCTGGACCCATCGGAA
TGGCTGCTGCAGCCGCCATCATCACAGGCAAGAGACGAAAGAagagctac
cattttgaaacaAACCCCTCCATCAGAAAACGCCAAGCAACTCGACTTTT
ACGGAAATTGAAACAACTCTTAACGGAATACACGACGAGAGTAGGCCAAC
AAGCTTGTATCGTCGTCTGTTGTCCAGGGAAACTGGGTGCATCTTTCAAA
TGTTTTGGAGCAGCACCACTGGAAAACATCGTCAAAAACCGTAAGAACAT
CATCATGGAGGATTTGGAGAACGCGCTCGCTCAACAAGCTCCCTCAATAC
CTGACACCAACCCTGATCTTCACGAACTTCCGCCGCTGGTGATTGAAGGA
ATCCCAACCCCGGTGGACAAGATGACACAGGCCCAACTTCGCGCCTTCAT
TCCCATCATGTTGAAATATTCTACTGGGCGTGGGAAGCCAGGGTGGGGGC
GTGACAACACTAAACCACCCTGGTGGCCAGAAGAAGTTCCTTGGGCGAAC
GTGCGAAGTGATGTAAGAAACGAGATGGATAAACAAAAGATCTCCTGGAC
AAACGCACTAAGGAAAGTGGTACGGAATTGTTATCGTTATCACGGCCGCG
AAGAACTTTTGGACGCGTTCGCTTCAGCCGACAACCAAATGGAACAACAC
AACACTCAACAAACTCAAGTCTTCACGTCCCAATACCCTCATCTTGTTCA
TACAATCAACAACGCGGACGGAACTGTCTCCATCATCCAAGTGGATGCAA
CAGGTGCTGTGACCACACTGTCTGAATCAGCGAGTCAATCGGAAGCAACA
CAGGCTGTGGCGACGCTGGCTGAGGTAGCTGCTTCACAAGGTGAAGTGAT
ATACGGTAGTCATTCGATGGACCACCATTCCACGTTAACGCACGACCACG
GAGGTGTTGTGACGTCAATCAGTGAAAGCGCTCTCCATGATGGTCAACTT
CTGCTCGGCGATGCGGTATCAGCTGCGGCTGCATTGGTAGGTGTCCAAGA
CCAAAACACAGCTGTTGTTTCCATTCCGGTGCACGCTGCGGCTGCCATGA
TGCAAATTCAAGGAACAAATTTGATACCTGTTTCCATAGCGAATGGTGGC
GGGGGCGTTCAATTCATCGCCACATCTTCTCTATCTAATTTCCAACTTCA
AGCCGCCAACGAACAACAAACTAACGCCCAACAAACCGTCACACAAAACC
GCCAGCCGCCCTCACTTTCTGCACAACCATCGGAAGATAATTTAGCGTCT
ATGGATGTTCCAATGACTGATCCCTCGCCACCCGTTTCACCCTCTCCGCC
CCTGGTACAAGAACAACATTCGGCCAACGAACTCGGAGTTCATCAACATT
CAACCAATGAGATGACAGTACATCAAAATTCGACCAACGAAATGGTAGTC
CATCAAAATTCGACCAATGAAATGACAATACATCAACAGCAACCACCCAA
TGAGATTTCAGTTCCCATGGCTACACAGGCGGTTGAGGTAGCAACCATGC
ATGATCAACAAACGAACTCTGTGACAGGCACTTGATGAAGTTTGTGGCAC
GATTCTACGTTTCTGTTTTCCTTCTATCTTTCGGGTTCCCCAGTCCAATC
CAGTCCaatcctttttcaaaaaactgacaGTTGGACAATTGAATCTTGTT
TTGATCAAAGTCAAACTTTTCAACTCTCCATTTCTTAGAAGTCGATTGTG
CTTGACAAAGTGTATAGTTTTACTTTAGTTCCAATACTTCTAAAGAAACA
TTTTGAGAGAATCTTGGCTCTGCGATGTTTTACTCTCTTATTTCCTTAGG
TCCATTGTGCtagatatttatatttttatttgtccCTCATTTTAGaacta
ttttttttccaaattttttctggTCCTTAAATTTCTTATATCCTCAATTT
TGTAAATAACCCTAAAATTCATATAACAAACTACTTTAACTAAATAGAGA
TTTAAAAATATGACCTGATAAACTGTCGCAAGTATATCTTTCAGCTTTTA
AAGGGATAACTAG
Run BLAST on NCBI

transcript from alignment at sc0000024:764417..776661+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002967 ID=TCONS_00002967|Name=TCONS_00002967|organism=Clytia hemisphaerica|type=transcript|length=12245bp|location=Sequence derived from alignment at sc0000024:764417..776661+ (Clytia hemisphaerica)
GAAAATTCCGTTTCCGTTTGGGAGGAACCAGCGGGTGCGAGGAAACTGTT TTTTCGAAAGAATTCAAGCGCCATCTTTATTCATTTTCTGGTACTCGTGG TCACACCTCACCCTTCGCTATGATCTTTCGAAGTTAATATTTGATTAAGA GCGTGTGTCCAGTATTCACGGAAAAGTTCTTTTGTTGACGATTTTTCACC CGCACATGCTCAGCAAGGTTTGAACGTAGTGAGCAAGCTCAAAGAAATCA ACGCATCCCAATTTCTACAAGTCTGCGCATCTGAACCTAACAACCAAATA ACAATCACTTTCTCCATGTAAGTATTGTCATACCTTAGCTCATTGACTTT GGAGAGGTCTGATACacttttttgcattttaaaTGCTAGTATCATATCAT TTTGATTAGGTTCTTGACCCATCGAAGAAATCCAATATGGCGGCCATTTT AACCAGGTAAGTTTTCTCTTTCAGATTCAGTGTCAATTGTAGATGACTTT ACTGCGGGCAGGCGGGGAAAGCTTAATGGGCCatcccagaaaatttttgt taccccccgtcggacgacgtgcattttttaatttttcatagcctcggaaa taatttttcttttccagtggtggtcgggaaattccgatgaaaatccatgt acttttgcaaaatgcatcggaaattccactcttttttgccttttttaatt caattgccttggaaatttgtacattttcttctctcaccttggaaacttcg aattttggtgaaaactttggACCTCTGAAATcttgtgtcgtccgcccccg ccctcccccctgttacagacaaattctggaatggcccaatactgtctcac ttttttatcattcttgGAAAAGGTTGTGAAAATGTTCTAATCCACCGTTA GTATCGTAAgctggtctaatgtcaacatccccctcttctaatttcgacac ccttcatTAGTTTAGGGGCAACGTCCATATTCAAAGTAGGGAGGTCGGGC CTTACGCgtgcggcagtaacaaaacatagattttcgagaaaaaaatattN TCTCAAGGAAGGAAACCTCTTTTAacataagtattttttccaaagtgtag agaatttattcagctttcttttgcagaaaaaatcagcacatAATGNcatt ttccttcaaaatttgaaaatgagtactcgcgggtgagttttttcaaactt cttgttcgcggcacggcaaaattttttatccgggggttctaaaatccaaa gGGCTAGCCACCCAAAACAGCTATCGACCTGGAATTTTTGCATCGTTCCC CGCaatagtttagcttttgagacgtaccacgttcGTGGTACGTTTTTTTA TCGAACGtgaatttttttagaaagaacaatgtttattctttccaaatgtg aaaaaagtaagaatcaagctgtttccggtggcaagcgcaagggaaagatt atggtgtaattacccccgtttcagctacatctatggaaaataaaactcgc accAAACCTCTCGCgcggaatttttcataaaacactttcgcttttggtgc cataatgaaggtacaaaatggctggtgatgcgtgcacgaaaatgcttgaa aaattgaacttcaaaatgtaatatctttggaactttagagaattggaagg taaatgacccctcatttttcttctgatggttatggctttccattaaactt ggtttggtattctgcaagtaagtttgaaatttcctctgaccaccctattc aaagtcgccacgcgtaacgggaaaagaccgttactTTCAAAACATACCTA CCCACCTCCTTAACCAGCCTTAAAACGGTCTTCATAAATAAATTGACCAA AATCTTACCGAAGCTTCCATTcccgccaaaatcaaaacaaacggcccgct aTAAATGTCACCATTTTCGGAGGTTTAAAACAGCCAAACTCcatcacaat ttttaaacagTCTTTATTTTTAAACTCCCGACAGCTCCCGAGGCAGAAAT GTTATACTCTGAAGAAGCAACCCCTAAAATTGCtcagggaaaggattttg gcTGGATAGCGTgctaaaagaaaaagtaaaggaGTGAGTGCTAGTACGGT AAAGGgtcttagatttttttctttgaatttttaatGGAATTTCATTTTGG TTATCAATGCCATGCAGCTAACTCTCAACATTCCGATATACCTACccact aacggtcttttcccgttacacGTGCCGAttttgaatatggacgtcgcccA TTAGAGATGAGAATAATGGGAAGGTccgaatcgctgattgaaactaattt tctttgctaAGCGTTCagagagaaaaatatcttttgtctatcagtgattc caaccttttcatcctattattcctatctctaaagaagggtgtcgaaatta gaggagggatgctGACATTGAGACCATCTTAcggtataagattcccattt ccgcaccaAGATTCTTCTTGTCACTTTCCTGAAACCTTTTTGCTAGATAT TTTTCTCGGGATAACCGGCATAAGATTGaaaagggtttgtttctaaaggt acgAAAAATCTTGTTTATATACTCACAAAACTGTGTGACTTTTGGAAGCT TATCTTTCAACTATCCCcaagtcctggtctttttggacctacctccgggt accgcATTGGAgctcctataaattaacctttgtccgttcgtccgtctgtt tgttaccagcttttctcgagattggctcgttagttttttcggatttttgg ctcaaagatgcaaaatgacaatacttaaaatgtgacggagcccgattttt gaaagacatttttttctggccaaaaatgccggaaatatgccggaaaaacc aatttttgacattttctcgaatgttcatccttagttttttctgatttttt gcagtaagatgcgtattcgcaatgttcaaaacatgggcaagtttgatttt ttgagaaaaatttttttccaaccaaaaatgacagaaattgccgtttttgc agattttcattggattttttcgttttatgtctttgtttttttcaactaAT AACGGCActatcatcattgacaataaaaaaaggattttctgtctAAGTCC ACCATTTTAGCACAgtctgaggattgagccgagaacgctctcAGAACGCC TGCAAGCTCCCGCATGGGTGAAAAACTATctctcaatcattttctcaagc aaagagtGTGCGAAGCGATTcgagctttacgatagtgccacggatcatca gtggatagcaTTCatttatcattatccctttattttcattcctagaacat ttgcaaaaaaaaggaaaaatagaaaagttattttttactgctctattacT ATTGCATAAAAATTGACTGCCCGGTTCCAGATAgtgaaaagggggggggg gggagaaaaatttcaacatttctgggaagggaaaacacaaaaggGCTGAG AAaaggatatttttattttcagagggGGGGGGAGATTTGTGGAAAAAggg ttttttcattttcagggggGATTTGACAACTGGGCAGTCTAAAAATCATT GGAGGAACTGACCCAGGAGAAAACTATGCTATGATTTTCCTCCTCCTTTT TGCCAAGAAAGTAAATTGAATATCTCAACAGTGAAAATTCCATGCTCTTT TATATCTTTTAACAGTGAACTATGAATCTAATGTAAAAGCTAAATGtcaa gaaatattatttttggtgtaattaattctttaaaaaatttgaaaaaaact tctgtCTTATGAggctcttcaaaatttttgacttttcaaccAGAACTTGA TAGTTAAGGGAAACAGACACTGACTGAAGTActtggaattttgcctgatC ATATCTGCTCATATACCTGAGGTTCCATGGCTTCCGAAATCTTTTAAGAA TTCTAGCGAATTGATGGTTTATATCAGCCTTTTTGAAAGCTGATTTTGAA TGAccaaaattagagaaaaattgaatttgttcCTATTAATTGAAAACTTG TTTTTCAGTTTTAGATATTCCTCACAATGGATTTGGATCCCCACGTCCAT CACACGACAGTCAAACTGGAAGAGATGCCTCATGCAGTTCCTGTCCATCA AGTTACAAGGTCCAATTCTCTCTCCATGACCCACGTTGGATCAATGTCTG ACGGCCTATCTGATGACCCCTCTTCGCCTGAATCAACAGCTTTTGATGAT ACTGATCTTCTTACTGCACCAAGTATGTTTTACTAATTTCATCTTTATTG TGGTCATTCATATAGTatttggacaaaaaaatttttccaaacatttGACA GCCCCCTTCCTCTTTGTACacaaagaacaatagaaatttctttcaaaaaa tatctgTACGCTATACGTCATTGAAAAAAAccctctcccccttcactgtg tacTACATGGAAAGCCCCAATTCTGAAAGTGTTTTAAAACTTGTAATTTA ATAGGTTTTAAAAAACATATTTGGATAGTTTCAATCAGTTGCAATAGTTA CAATAGGTGCCAATACTGCAATCCCAACTTTTTTGTGGTTACAGTTGACT ATTGCTGTTTAAATAAGGGCCCAATGTTTAAATTCAGCTCACTCTACACC CAAGGGACCTAAATTCTTTGTCAAAGGTTTGAGACCTGAACTTCACTCTT CACCATGCCTCAGTGTCACAACTAGTTAATGTTAGAATaaatcatttaat tttttcaaactctCAGGTGTTGGTATGCACGATGATGTCACAGATGAAGT CACCGCTCAATTAGCCGCTGCTGGACCCATCGGTAGGTCTGCTTTTAAGC TTGgtcttttgaaatcaaaagaagcaaatCTGATCTGTGGATACATATGT GATCAGCCAAAGCATTGAAAATAGTGCAGTGAATATCAGtaaaaatcaat attattaTGATACTATCAGCAAATAGAATGATTTACTAGAAATTGCAGTA AGgcttaaaaaaagttattggaaAAATTGCTAACTTCAAAacattagaac tgaaaaaagtaattttctgGAAAACATGTTGCAATGATAATACTAAagtt tctttgaaaagaaatcAAATAGAATGAGAAGAAAATaaccaattttacaa ttttactcctagaaagttgtttttaaagtGCCATTAACGTTTAAAGCTAT TCCAGGAAAACTTTATATTAGTTTATGTCCAATCGAATCGGCTCTATTTA CGTGTCATCAAGTGCACCAAATGGCAGCATAGCCCAAGGGTCTGGTTCTT TTTTATTATACTTATACTGCCTTATACTTATATTTGCAAGAGTGCCAGAT AACACCTACACGCAGCTTCTCAGAACATTTTGAAGTGACGCAGTTTATCA TTactaaaaatggacaaaaagaacgacaaattcaTTGGGAGTCATGCAGT TGGTACCCGACATCATGACGACTAactgcaaaattgaaaatttgagattA CACCCACCACCCCTTAGCAGTTAGTACCCAAATGTACTACGTGCCTTTGA CTATTGACAGGTTGACACCACCCCTATTTGCACTTGGTACAGCTTGGTAC CTTGCAGTACTAAGTGCATTTGACTATTGAcagtttggcaccacccccta TTCTATAACATAAACACAAAGCCCAACATATACGATACAAAGCTACAAAG CGCCAACATTTAAAGTAAAGTCTGCCCAACATAATAGGTCTAAAGcccca gaaataaaaaatatgaattaAGCATTGTTTGACCAACGACTGGGAGAAAA GCTtgagaagacattgcagtgctGCGCAActtcataaaaacaaaaagctg GCAATTTAGCTATACACAATTTCAAAACATGCAATCTTTGAAATGCTGAT TTTGTAAATCTGGAGAGTAAAACCAAGAAAGCTCCTACATTTTTTTGTAT CTACCGTGAAAATTAGTTACGCAAAAATAGGTAATTTTTActataaattc ttgaaaactCCTAGGAAAGTGAAAGAAGTTGGTGTCAACCGCGAAGATTA GTTTTGCAAAAAACGCCAACTTCATACCTTCACACactgtgaaaattagt tccctagGTATTAATATCGATAGCCTTTTTAACAATTAGTACACTGAAAG TACCATttgattgacttgaaatttataGCACGCTACCCCTAATAGCACTT ACTACCCACAAGGTACTAACTGCAAAAATCAAATAtgacccaccacggta ctaaccgtcATGATGTCTGGTaccaactgcatgacccccccttccccttg acaaatttcatattttaggTTAAGAGTTTTGCCAGTAACGTCAATCTTTT AATCATAAAAACTTTCCACAAGCCTTATTCGCGGGCCCTTCTCAAAATCG TATTTGTTTTCGAACCATTCTCGTCCCACGAAAGATGCTATGGATCCTAA GGGTTGGCTCCTACTATAATAAAACGTTCATGAAATTTGGCCTTCATCAT TAAAATTCACATATTTCACTCCTTCCAGGAATGGCTGCTGCAGCCGCCAT CATCACAGGCAAGAGACGAAAGAagagctaccattttgaaacaAACCCCT CCATCAGAAAACGCCAAGCAACTCGACTTTTACGGAAATTGAAACAACTC TTAACGGAATACACGACGAGAGTAGGCCAACAAGCTTGTATCGTCGTCTG TTGTCCAGGTACGTGTTTTTTAAGAATCATTTCGTTATCTCTAAATCGCG TCATTTTGAAAAGCATTTTGTGAGGGAATATTTTGCAGGCCTGAGTTCAA AACCTACTTTTTAAATTAATCAACATCATATTTTGAGTAATAGAAGGGAA TGATATTGAAATTATAACGACAAAGACTGGAACTTTTAGTTTTCCTTCTC AGAAAAGCGACTATCTAAATGTAAAAACCAGATTATTCCTCCTGATTCTG ACTTTTTCAAACTCTATTCTCATCCAGGGAAACTGGGTGCATCTTTCAAA TGTTTTGGAGCAGCACCACTGGAAAACATCGTCAAAAACCGTAAGAACAT CATCATGGAGGATTTGGAGAATGCGCTCGNCTGGGTGCATCTTTCAAATG TTTTGGAGCAGCACCACTGGAAAACATCGTCAAAAACCGTAAGAACATCA TCATGGAGGATTTGGAGAACGCGCTCGCTCAACAAGCTCCCTCAATACCT GACACCAACCCTGATCTTCACGAACTTCCGCCGCTGGTAAGACTGTTGTC CTCTCTCACGTGTTGTCTTATTTGTCAATGTATAAGAGagatttccagaa aaaacttagtataatgatgaaaagaaaaatgatgatACTGTAAAGCAATG CTGTTAGTCATTTCTCTACTAAGCTCTTAATAGCTACAGTCAACTCactg taattcgaactagagTAGTTGCTATACTAAAAAAAATCCctttaaaaaat gatgtttcCACTTTTCAACACAGGTGATTGAAGGAATCCCAACCCCGGTG GACAAGATGACACAGGCCCAACTTCGCGCCTTCATTCCCATCATGTTGAA ATATTCTACTGGGCGTGGGAAGCCAGGGTGGGGGCGTGACAACACTAAAC CACCCTGGTGGCCAGAAGAAGTTCCTTGGGCGAACGTGCGAAGTGATGTA AGAAACGAGATGGATAAACAAAAGATCTCCTGGACAAACGCACTAAGGTT TGGAATTCAAAACTATCGTATTCTGAAGTAGTCCTATATTTTCGGATCCA AGTCATCCGAACATTTTGGTTTCGAAAGGGCAAAAACATAATAAGAGTAT AAATTCCAGTAAGTgcaaattaaaaacttttatagATCTAAAGCAGAATT TTTGCATTCTTTTATGTTTATGTCCTTGATATGTTTTTATTTACTGTATG TATGCGGTCAAGAATTTTTATCAGCTCTGATCAGCTACTCTAGTAGAAAA CCAACTGTGCATTACTCTTCaactttattttttgtaaaaagtactCTGCA GAAACAAACAATGTTAAAAACATATTCCGTTAGAGGCTTCGCCATCTcca aattctgcataattccaCAAAACTTCAAGAATATTttgtaggcttctgct catcctctagcgaaaaaagtttcttatagaggctgcTTAATACTCGGTAG ATCTTTTTTCCCAGAATATGCCGCTTTTCGCCGAATTTCGGCGAACAACC tattttagctggcgagtgctTTTGATGATTAATTTGCAAAGAGTACCTTT GCAAGAGTACCTGTTACGAAGTAGCGTAGCTTTCGCTgttcaaattcaag atggccgTCGAAGCGGGAAGTGGTTTTCGTCAAGCTAGAGTACTCGTTTT TGATTTGGGGTAGTTTGTTTAAGGCGAAAGAAGTTTTGTTAATACAATTA CAAGTTTTAGAGTATGTAATATATGTACCAAGAAAAAAAATATCGTCTAG AACATTTGTTATCAAGCTTATAATGtggaattttgatttgttttggtggA CATTTTGTTCGTTTTGAACGAATGTAGAAAAGATACAGTAACAGGTNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTTGTTGTAAGTATCTAATAGTAATATTATTTTGTGGCTTTATCTC TTTCCAGAGAGCCTTCTTCCCTTTTACTTTGTGTCTACTTAAAGTTGTTT GAAAAAGTGTAGCAGCAGATTCTAttattctttgttttgttaAACTTTGG CAGAGACGGGAAGAATGTtggaatcagttttattgatgaAACCCAATATG TCTCACTTAACTAACCTGAAGAGGTTCTTTGGAAACAAATAGTTATtgtg aaattttctttcaaagtttttgagaaattcaaattcgTTGACTCAAAGCt ctaatatcaaaacattccaaaataaaaaaacattcgaaaatagaaaaaaa tcattcgaaaataaaagaaacattcgaaaaggcGTGCCTATGGCAAAATG GAATCCCGTCTAACACTGGAATGCCttcactttgatttcttttgtttatc ttttaacTCGCATTCGAGTTCCCATAAAACTTAGCGACTCGCCAAATAGC ACGAGTCGGCCACCATGAGAGCCACCGTAGCGGGAAACCAATCCATACAC TATTAAACAGACCtataggaagtataggtctgcgaatcagactaaaATAT TTGCTGATTTGCTTTGTAAAACTCATTTCCTTCTCTTGATCTTGCCTTCA CCACTAAAACTTTACTTTAATTAAATTGATTTACGGTAAATGaaagtaaa ttcaaaataaatgatTGTACGCAAGTGCATCCTTTTAATGTTTTAAcatc ttgattttttgaaaaaatacgtATTTAGNTCACCACTAAAACTTTACTTT AATTAAATTGATTTACGGTAAATGaaagtaaattcaaaataaatgatTGT ACGCAAGTGCATCCTTTTAATGTTTTAACatcttgatattttgaaaaaat acgtATTTAGAttcaaagtaatttattttCAGGAAAGTGGTACGGAATTG TTATCGTTATCACGGCCGCGAAGAACTTTTGGACGCGTTCGCTTCAGCCG ACAACCAAATGGAACAACACAACACTCAACAAACTCAAGTCTTCACGTCC CAATACCCTCATCTTGTTCATACAATCAACAACGCGGACGGAACTGTCTC CATCATCCAAGTGGATGCAACAGGTGCTGTGACCACACTGTCTGAATCAG CGAGTCAATCGGAAGCAACACAGGCTGTGGCGACGCTGGCTGAGGTAGCT GCTTCACAAGGTatgaatttttatcatttttagggTCCTGGACTGTCCTG GAGCTGGTTAGTCTGTACACAGATCCAACATCTACGGCTAAATTCAAAAT CCATTGCTGTAGATGATCTGTTGTCACtgtcttttctgatttgagatttt tcaaaccgaccgctgcgatggagagGAGAGACGACGCGAAAAAATTgttt ctatttataaatcatacttcatcgcaaaGATTTTCGTACGGGAATTTTGT TAACAAACAGACAGTGCCCACATAGTGTACTACGAAGCCATAAATGTAAG ATACACTTTGGTAAGAGAAGGAGTTGGTCCACTACCAGTATCTTCGATTT ATATATTAATACTCATGATGGGAGACCACATTCTTTGTTATGCTTCATCG ATGAATTTATAAGAAATCTAGACATAATATACAGTTAAAGCTGTAAAGTA TATCTTTCTCTAAATGTTGTATATTACCTTTCTCAACACAGGTGAAGTGA TATACGGTAGTCATTCGATGGACCACCATTCCACGTTAACGCACGACCAC GGAGGTGTTGTGACGTCAATCAGTGAAAGCGCTCTCCATGATGGTCAACT TCTGCTCGGCGATGCGGTGAGTTGAGTCTTAATCTCTCGTAATCACATGT TTCTcgttgtttttctttatttttaattttccatgAATGGTACATTTCAA GTGCGATTGGTTTTTTATTTCCTAAATTTTGACTATATTGCGATATGTGG TGTGACTCTAAACTCGAATTTTCACGAAGAATTGGACATTTCGTTTTTGA ATCTGCTCATCTTGCATTACCTGTTTTTGCTACCTTTCGGCAAGAACTTT CAAGCATTATTCTTGCCCTCTTCTTCCTCAGGTATCAGCTGCGGCTGCAT TGGTAGGTGTCCAAGACCAAAACACAGCTGTTGTTTCCATTCCGGTGCAC GCTGCGGCTGCCATGATGCAAATTCAAGGTTTGTTTGCTCATTGATCACA TTTTTTCGATCCACTGCAACTATTTCATGACATCTTGGACTTTTCCAGCA CTTCTATTATACTCTTatgttccaaataaacgccccccccccNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNCCCCCCCCctccgtttatttggaacctaagagcaTGTT TGTGTTAATTTTCTTTGGCTATGTAGACTTCAGTATACTTTCGcttattc gaatttttttccAGCCCCTGTCAAGGAGAAACAACCCTCTTAATAcattt tctataattcaaatctctTTGTAATTTGAACAAATAAGATTGCCTGTTCG AGATCGAATGAGCAACAGTCAAATGCTGACACTTATCCTTATGCTCATAT TTCTGGACTTGTAACTAACTAAACATCTCTCTTTTAATTTCCAGGAACAA ATTTGATACCTGTTTCCATAGCGAATGGTGGCGGGGGCGTTCAATTCATC GCCACATCTTCTCTATCTAATTTCCAACTTCAAGCCGCCAACGAACAACA AACTAACGCCCAACAAACCGTCACACAAAACCGCCAGCCGCCCTCACTTT CTGCACAACCATCGGAAGATAATTTAGCGTCTATGGATGTTCCAATGACT GATCCCTCGCCACCCGTTTCACCCTCTCCGCCCCTGGTACAAGAACAACA TTCGGCCAACGAACTCGGAGTTCATCAACATTCAACCAATGAGATGACAG TACATCAAAATTCGACCAACGAAATGGTAGTCCATCAAAATTCGACCAAT GAAATGACAATACATCAACAGCAACCACCCAATGAGATTTCAGTTCCCAT GGCTACACAGGCGGTTGAGGTAGCAACCATGCATGATCAACAAACGAACT CTGTGACAGGCACTTGATGAAGTTTGTGGCACGATTCTACGTTTCTGTTT TCCTTCTATCTTTCGGGTTCCCCAGTCCAATCCAGTCCaatcctttttca aaaaactgacaGTTGGACAATTGAATCTTGTTTTGATCAAAGTCAAACTT TTCAACTCTCCATTTCTTAGAAGTCGATTGTGCTTGACAAAGTGTATAGT TTTACTTTAGTTCCAATACTTCTAAAGAAACATTTTGAGAGAATCTTGGC TCTGCGATGTTTTACTCTCTTATTTCCTTAGGTCCATTGTGCtagatatt tatatttttatttgtccCTCATTTTAGaactattttttttccaaattttt tctggTCCTTAAATTTCTTATATCCTCAATTTTGTAAATAACCCTAAAAT TCATATAACAAACTACTTTAACTAAATAGAGATTTAAAAATATGACCTGA TAAACTGTCGCAAGTATATCTTTCAGCTTTTAAAGGGATAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001631XLOC_001631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002967-exon-sc0000024-1491911889:764417..764733TCONS_00002967-exon-sc0000024-1491911889:764417..764733Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:764417..764733TCONS_00002967-exon-sc0000024-1510915933:764417..764733Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:764417..764733TCONS_00002967-exon-sc0000024-1575043694:764417..764733Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:768425..768638TCONS_00002967-exon-sc0000024-1491911889:768425..768638Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:768425..768638TCONS_00002967-exon-sc0000024-1510915933:768425..768638Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:768425..768638TCONS_00002967-exon-sc0000024-1575043694:768425..768638Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:769133..769198TCONS_00002967-exon-sc0000024-1491911889:769133..769198Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:769133..769198TCONS_00002967-exon-sc0000024-1510915933:769133..769198Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:769133..769198TCONS_00002967-exon-sc0000024-1575043694:769133..769198Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:770895..771074TCONS_00002967-exon-sc0000024-1491911889:770895..771074Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:770895..771074TCONS_00002967-exon-sc0000024-1510915933:770895..771074Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:770895..771074TCONS_00002967-exon-sc0000024-1575043694:770895..771074Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:771344..771393TCONS_00002967-exon-sc0000024-1491911889:771344..771393Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:771344..771393TCONS_00002967-exon-sc0000024-1510915933:771344..771393Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:771344..771393TCONS_00002967-exon-sc0000024-1575043694:771344..771393Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:771492..771602TCONS_00002967-exon-sc0000024-1491911889:771492..771602Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:771492..771602TCONS_00002967-exon-sc0000024-1510915933:771492..771602Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:771492..771602TCONS_00002967-exon-sc0000024-1575043694:771492..771602Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:771840..772063TCONS_00002967-exon-sc0000024-1491911889:771840..772063Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:771840..772063TCONS_00002967-exon-sc0000024-1510915933:771840..772063Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:771840..772063TCONS_00002967-exon-sc0000024-1575043694:771840..772063Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:773999..774276TCONS_00002967-exon-sc0000024-1491911889:773999..774276Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:773999..774276TCONS_00002967-exon-sc0000024-1510915933:773999..774276Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:773999..774276TCONS_00002967-exon-sc0000024-1575043694:773999..774276Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:774758..774882TCONS_00002967-exon-sc0000024-1491911889:774758..774882Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:774758..774882TCONS_00002967-exon-sc0000024-1510915933:774758..774882Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:774758..774882TCONS_00002967-exon-sc0000024-1575043694:774758..774882Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:775148..775244TCONS_00002967-exon-sc0000024-1491911889:775148..775244Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:775148..775244TCONS_00002967-exon-sc0000024-1510915933:775148..775244Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:775148..775244TCONS_00002967-exon-sc0000024-1575043694:775148..775244Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1491911889:775711..776661TCONS_00002967-exon-sc0000024-1491911889:775711..776661Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1510915933:775711..776661TCONS_00002967-exon-sc0000024-1510915933:775711..776661Clytia hemisphaericaexon
TCONS_00002967-exon-sc0000024-1575043694:775711..776661TCONS_00002967-exon-sc0000024-1575043694:775711..776661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:764417..776661 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.44498 6.07111 1.59667 2.95169 5.72685 4.77869 3.00561 1.86851 5.97738 6.92055 12.6736 7.48953 4.49455 5.15098 5.96926 12.7778 8.6721 8.69881 5.15402 3.8069 10.9167 7.46104 17.5543 14.2961 6.43948 6.84612 2.50914 3.52509 15.5337 16.8549
Blast
BLAST of TCONS_00002967 vs. Swiss-Prot (Human)
Match: NRF1 (Nuclear respiratory factor 1 OS=Homo sapiens GN=NRF1 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.304e-89
Identity = 221/463 (47.73%), Postives = 279/463 (60.26%), Query Frame = 3
Query:  450 SMSDGLSDDPSSPESTAFDDTDLLTAPSVGMHDDVTDEVTXXXXXXXXXXXXXXXXXXXXKRRKKSYHFETNPSIXXXXXXXXXXXXXXXXXEYTTRVGQQACIVVCCPGKLGASFKCFGAAPLENIVKNRKNIIMEDLENALAQQAPSIPDTNPDLHELPPLVIEGIPTPVDKMTQAQLRAFIPIMLKYSTGRGKPGWGRDNTKPPWWPEEVPWANVRSDVRNEMDKQKISWTNALRKVVRNCYRYHGREELLDAFASADNQMEQHNTQQ-TQVFTSQYPHLVHTINNADGTVSIIQVDATGAVXXXXXXXXXXXXXXXXXXLAEVAASQGEV-----IYGSHSMDHHSTLTHD--------------------HGGVVT-------------SISESALH-DGQLLL-GDAVSAAAALVGVQDQNTAVVSIPVHAAAAMMQIQGTNLIPVSIANGGGGVQF 1715
            SM     D PSSPE T++DD+D+L + +        DEVTA LAAAGP+GMAAAAA+ TGK+RK+ + FE+NPSIRKRQ TRLLRKL+  L EYTTRVGQQA ++   P K    FK FGAAPLEN+V+  K++I+EDLE+ALA+ AP+  + N    ELPPL I+GIP  VDKMTQAQLRAFIP MLKYSTGRGKPGWG+++ KP WWPE++PWANVRSDVR E  KQ++SWT ALR +V+NCY+ HGRE+LL AF     Q +   T     +  SQ   +V T +N DGTVS+IQV  TGA       AS+   T  VA +   A + GEV           M   +T   +                     G  VT             +++E+ L   GQ++L G+  +A  AL GVQD N  +V IPV    +M Q      +  S+A G G VQ 
Sbjct:   36 SMLSADEDSPSSPEDTSYDDSDILNSTAA-------DEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVN---SELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQT--VVQTFSNPDGTVSLIQV-GTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDAN-GLVQIPV----SMYQT-----VVTSLAQGNGPVQV 475          
The following BLAST results are available for this feature:
BLAST of TCONS_00002967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NRF12.304e-8947.73Nuclear respiratory factor 1 OS=Homo sapiens GN=NR... [more]
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