TCONS_00002962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002962
Unique NameTCONS_00002962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002962 ID=TCONS_00002962|Name=TCONS_00002962|organism=Clytia hemisphaerica|type=transcript|length=1128bp
agacTTTAAAGAAAGCGGAGtgcaaaatatagaaaaatgtATAAAGAGGG
TCTAAAAATTGAATGGTTTTAGTACATGATTGAATATCATTTGAATCAAG
ATGAAGATCGTTTTGCTTGCAACATTTTTGTGCGTCAATTTCTTTGCCAA
AACTTTTTCTCAAGAACAAGGTCCATACTTCGAAGGAGACATTATCCTCA
CACCCGATCAACAGGACGCCATTTTGGAACAGAAATCGAAAAACTCTTTC
GCATCGGTGAGAACGGGCCTTTGGTTGGACAAtggaaaagttcaaaaaat
tatCGAATACGGGATAGACTCTAAACTAGCCCGCTCCCCGATGGCCGTGC
GTGTGATCCGTGAGGCCGTTGaagaatatgaaaaattcacgtGTTTACGT
TTCAAAGAAGTGAGCGGACGTCCGAAAACTAAATATCACATGTATTTCTT
CATCGGACGGGGTTGTTTTTCGAACGTTGGACGTTTGGAGGGCGGCAACC
GAATCAGTTTAAGTGCAAATGGTTGTTGGACTAAAGGAATTGCTATCCAT
GAAATGGGTCATAGCTTAGgcTTCTTCCACGAGCAATCAAGAGTAGATCG
TGACAATTACGTTGACATCAAATGGGAAAATATGTTTGATGGAGCAAAGA
GGAATTTCGATAAATACTCAACAGAAAAATTGTATGACTTCGAAACAAAA
TATGATTATGAAAGTATTATGCATTATCCAgaaaacgCTTTTGCAAAACC
TGGAAAGATCACAATCGTGGCCAGAGatccaaaatatcaaaaagtgatTG
GCCAAAGAGGTGGATTGAGTCGTATTGATAAAATTCAGCTCAATCGAATG
TATTGTAATGACAATTATACCACCCCAAAACCCTGGACCGTAGCACCGAA
AGATTGCAAAGATAAAGACAAAGAAACATGTCGTAGATTACGTAATGTTT
GTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTCACATGTCGTGTCTGT
TAAAAGAaacactttttgagttttaactaTACAGAACCTCGTGTAAAATA
AACTTTAATCATACACaatattttttagttgtttGTTTGAATTTCTAGCG
TTTCCCTGAAGAATTTACCTTTTCGGCG
Run BLAST on NCBI

protein sequence of TCONS_00002962-protein

>TCONS_00002962-protein ID=TCONS_00002962-protein|Name=TCONS_00002962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MKIVLLATFLCVNFFAKTFSQEQGPYFEGDIILTPDQQDAILEQKSKNSF
ASVRTGLWLDNGKVQKIIEYGIDSKLARSPMAVRVIREAVEEYEKFTCLR
FKEVSGRPKTKYHMYFFIGRGCFSNVGRLEGGNRISLSANGCWTKGIAIH
EMGHSLGFFHEQSRVDRDNYVDIKWENMFDGAKRNFDKYSTEKLYDFETK
YDYESIMHYPENAFAKPGKITIVARDPKYQKVIGQRGGLSRIDKIQLNRM
YCNDNYTTPKPWTVAPKDCKDKDKETCRRLRNVCKADAVKKICPVTCRVC
Run BLAST on NCBI

transcript from alignment at sc0000024:673197..680989+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002962 ID=TCONS_00002962|Name=TCONS_00002962|organism=Clytia hemisphaerica|type=transcript|length=7793bp|location=Sequence derived from alignment at sc0000024:673197..680989+ (Clytia hemisphaerica)
agacTTTAAAGAAAGCGGAGtgcaaaatatagaaaaatgtATAAAGAGGG
TCTAAAAATTGAATGGTTTTAGTACATGATTGAATATCATTTGAATCAAG
ATGAAGATCGTTTTGCTTGCAACATTGTTGTGCGTCAATTTCTTTCTAGC
GGAGctttttttgaaggggcgccgaagagtGAGGGGCGCCAGAAGAGATT
TTTTTAGACGcctcaatcttaaaaatcatactttatgcgccttaaaccgc
gccccaggaccaattttacaattttaccaaTTTCGCTTCGGTCGTATTAC
ACATTaattctttaagtttcttttcattCTAGCAAGTGCcaaatttgtct
ttttttatttagtgatttacagttgggtatcttggcagtcgattttcaaa
aaaaatttagtcgaccccaaccatggtggggcctgtttatcccttttcca
ttcatcaaagatatatctacttttatccactaaatattcattatgcctag
gcaaatgaattagtaaaagttttgaaactggtgggtggggtgccactttg
gaaaattgggggggggggcgccatttcaaagaaattgactttggcccctc
cagaaaaatttccccacaacgccactgcttTGTattgatataaaatggaa
tggcccaatggaCGGGGAATTACCCAGGTATCGCGTTCTTTGTCTGATTT
TAATGGGTTCTTTGCCGTACAAACTTTTCGGTTCCATGTTCTGCACCCGT
TACTATTCACTGGATCACGTCACATATGGAATTTGATAgttttcagtcaa
aaaaaattcctaTTTCAGGACAAAAACGAAGCCCACTGtccaaataacat
tttcaaaacaagacTTTAAAGAAAGCGGAGtgcaaaatatagaaaaatgt
ATAAAGAGGGTCTAAAAATTGAATGGTTTTAGTACATGATTGATATCATT
TGAATCAAGATGAAGATTGTTTTGCTTGCAACATTTTTGTGCGTCAATTT
CTTTGCCAAAACTTTTTCTCAAGAACAAGGTAAAGAGatttacaatcatg
gacaagAGGTTGTAGACTTTCCAAGgttgaaaaatttccaaaaaaactct
GAAAACCCATTGTTACCAGAAgccaatgttgtttttattggatgAGATAT
TGGGTGACAAGTCCAGAAGCCAAATCCACTCAACATTGAAGGAAACATTA
TTGCAAAGTCTTCAGGTCGTTTTTTGTCTGAGATTGAAGGTTCAATGCGG
AGTTTTTcacttcaacttttttgagaagATATATAATTAAAACCATTTGA
GAAGGTTTAATCAATAATAAACAGCTTTTTAGAGCTCTCTGATGCAAACA
ACTAGCTGTGTGGTTaaacatttgaaacattttcagtcattttcagtacC
CTAGGAGGTATACaggtaccctacgagggacttattgatctattttggtg
ttttgtaGACCCTTCCTGGGACTGGTGGaattgaaaaaggtaccctgacc
aacGTCACATTCCCGTACCCTCTTTATACCATAGTATCCCAATCcgggtt
tctcaattttaacgGTATTTAAAAAGGGTTAGGAGAAAAATCACTTTACA
TATTTGTTTAAGGTTTTCCTTTCTTGTCAACTTTTATCATAATTCGATTC
TGTTAGATGTTTTGCCTGGCTAAGATGCAACCGTAGCTTTCCCCAAAAAA
CCTattgaaaaaaacgaaaagtAATGTAACATAGGAATGTAATAGAATTC
CTTATCTTTGGAGTTTCTAGAACGGTTAAATTCCATGCCCAACTgacaca
aaacgttgtttcgacgtttatctaatgttcacaacgtccatataacgttg
gatgaacgttgaaacaacgttttgtgtcAGCTAAGAGTAGATAAACGAgc
ttataattaaaaaaaatactatcttggCCGCTTAGCTTAACAAAATTTTC
GCTTCCTGCTATTGTTCAATTGTAAAAAAGTTTGGGAGATAATGAAATGA
TtatctgtgacgtcatcataTCAAGCTCTGTTGAAAAAATATTATCCGCA
TCTTTACAGCTCTTGTTAAAAACTTCTTGAAAATACTCCAGGTCCATACT
TCGAAGGAGACATTATCCTCACACCCGATCAACAGGACGCCATTTTGGAA
CAGAAATCGAAAAACTCTTTCGCATCGGTGAGAACGGGCCTTTGGTTGGA
CAAtggaaaagttcaaaaaattatCGAATACGGGATAGACTCTAAACTAG
GTAagcctttttcaaattattttcattttcttaatgcttgaatcattatt
ctttttggcccagcgcgcagcgcaatgggcctttaaaacacaactggtcg
aaaaaatttgaaaatatggtcaaatctttctttcttaattAGTAGAAAAA
AGCTTAAAGTAATTCTAAAACTTTATTGCTCGCCCAACTCGAGtctatac
attgaaaaaattcgcTCCTGTTGTATGGCGATTCTGCAGCGGAAAAATAT
GCTGACAGTGCCAACACTGATGGGCCTTTACgccgcttaggctttcttgt
tttAGAATATAGAGAGAAGGGGGGGGAAAGTTATTTAATCTTTTTATGCT
TTCTTTTattgctgtgtaagcaaatggaaGGAGGTACGTTAAATATGACA
ATGACTTTTGGTACGAGCTTTTCTGGTCaaaggaaattttaaaatatcta
aaaattcaTCTTGTCAAGGACAGTTATTCCCTCGTTTTATGCTTTCTTTT
actgctgtgtaagcaaatggaaGGAGGTACGTTAAATATGACTATGACTT
TTGGTACGAACTTTTCTGGCCaaaggaaattttaaaatatctaaaaattc
aTCTTGTCAAGAAATTTGTCTTGTACCTTAGGTGGATTAAGTTTTGCGTA
AACTTTTTTTCGCAAAtcgaaaatctaaaaatttcacGTGAACAGAAATT
CGTGAATCAGCCTTACCTCTTATCTTTTTCACccgatttctttcattttc
ctaggggtttggGGTTTTCGGATTTCAAAGTAGCGAGGACTGAATTTTAC
GAAAACGgtcaaaattcgcaaaaattaatccacacAAAAAATTTTTCCCA
ATCAAGAATTGGTAACAAAACGCATAATaatgatatttttcaatgaatca
ATTCTTTCCGTTCTTTTTTTACGTATAGCCCGCTCCCCGATGGCCGTGCG
TGTGATCCGTGAGGCCGTTGaagaatatgaaaaattcacgtGTTTACGTT
TCAAAGAAGTGAGCGGACGTCCGAAAACTAAATATCACATGTATTTCTTC
ATCGGACGGGGGTAAGAaacatcaaagttttcaaaatatcaattttcttA
TCTgcccttaagggaagaaatttccgCAGTTGTTGTGTCAAATCCacgaa
acacgaatattctcaggatttaaaaaatcaactctaaaattgttcttttt
agggcaaaataggccaaattgtaaacaaaaaaaatttgtcaaccACGAAA
TCGAATTTCGCGAAACTTGTGAATTTTGAActgtgaaccgcgaaattaaa
ttccgcgaataTTTCTTCCCGTGAAAACTTCTTCCCTTAATGATGGACCG
AGATTTCAGCTGAAACTCGTCTGATTCACAGACCGTGATACTTcttaaag
aaactttttcgttaGATGATGAGCACGCTGAAGCTGGAAACCTCAAAGAA
TGTCAAATATTTCTTAAAGATCTTTTAAACTAAGCTTAAAAACCTTCTTC
CTTCCTAGAAAAGGACCGACACTTTTTAAGAACGCaaagaaaaaaagtat
ttaCTGGCAAACTGCAAACTTTTATCTCCATATTATAACTTTTTTGACAG
TTGTTTTTCGAACGTTGGACGTTTGGAGGGCGGCAACCGAATCAGTTTAA
GTGCAAATGGTTGTTGGACTAAAGGAATTGCTATCCATGAAATGGGTCAT
AGCTTAGGTAACCAACTCTTTTTTCTCTGTTTCTAAATTTTGCTCTTTCA
CTCCCTAGAAATATACCCGCTTTTTTAAAGAAcgactttataagaacacg
aagCTGAAAAAAGACCGAAACCTAAGAACAGATTTTAAACCCACTTTAAG
TTTTTAACTAAGCGTATTgagaacatcataagaacatttaagcctgaaaa
aatattcagcatggtCTGACTTGTAGATTCCTTCCAAGGTGGTGTAAAAg
actttcaaatctttttcgTCTATCTCTAGaaaacaatacaccttttcgac
cgtagccgccaattgccgtgcgggcatttttttgtccgctttatcccact
aaaaccgtcccagtccttttttcgcacctatagacaatagagaAGTATGT
gtcaaaaaggattggatcgagtttagggggataatttaataattaagtgg
cacgctcctgaccgcgcgactacggtcgaaaaggggTATAGAATTTTGAC
GTAAGGATTGTGGTAAGAgcccatttttttaaattttaagatttcatttt
gttttgctcaATACCATGAAAAGGAATCTACAGGAAATATATCTCAAACT
ATCTGATAACCCCTTTAATACTCCAAAAACACTAAGTCAGCCGGTAAAAC
ACATCAAAACATTTAACGTCCAAACTTAGGTTGGTCAGTTGACTCTTACG
TGTTTCCCGATAACAGTTTTAGAttatttcccaaaaatcaataacaaaat
taattttttaggcTTCTTCCACGAGCAATCAAGAGTAGATCGTGACAATT
ACGTTGACATCAAATGGGAAAATATGTTTGGTAAGTGTTAGTCCGAGTTA
TCCCAAGTGATTATTTCGAGTTGTTAAGAAAATTACTTGATTCATGTTAT
TGAGTCAAATATGTCATGAAAACTCTTAAGTTTGCTTTAAATATTGAGCT
AtcttttgtttataaaattttgaattatttgagTCGATTTAAATCTGGAT
TGTATTgctttcagcaaaagtacgactGAAAAGGCGCGAACTTTCGTTCA
GCTCTTGTATTCAGCTCAGAGTAGAAGCTATccgggagggggtactaggg
ctgCGAGCTTTTGACCCTCGGACCGTTAGCAGGActaaaaaggaaataaa
ataGGAAAATGTTgcgatttttacgacccttattgggactaatttgacca
aaatttgatCTTTCATAGAGCAAAAAGTTGaacttttcctatttttccga
cccttagttggactgaaatttaattttctagatttttcaaaccctaCAGG
GACTTtcatgtcccaaaaaagggacccttaagggtggcacatacccgtac
ccttcacttgcGTAAGTAAGCTATCTCCCTATTTTCATATCATCCTCAAA
GAGCATAATATGGAAAGCGTTAACCCTCTCCCATTATCATAAAATTAACT
TTGTCGCAAAATAAGCTTTTGCAACAGTAAAAAAAACTTGGCAAAAAGAA
ACATCCAAGCATGTACACTTTAGTCTTAAAACTCTTCTGTTTTAGATGGA
GCAAAGAGGAATTTCGATAAATACTCAACAGAAAAATTGTATGACTTCGA
AACAAAATATGATTATGAAAGTATTATGCATTATCCAgaaaacggtaatt
ttttattcaatcaaactgtatgtatttgtttttttacCCAGCTGACAATC
AACGTTGTTTCagcattcatctaacgttttatgaacgttgtgaacattag
ataaacgttgtgtgccagctgggtacccAACCATTTTTCTAGGGCACGGC
CAAGGGTAAGCAAACATCTCTATCTTCGGATCAGCTACCGAAAGGGAGCG
CTTATAGTTCAGTATCTATCAATCTGTGGTACAGCACTAACTAAATAAAG
GGCGCTTTAAAAACGCCCAATTTAGTCAGCCCaagcaaattttgaaattc
tcttCTAAGCAGGCTAAATATCCTCACATCAATGCATGCAATGGCTTCCT
GAATTCTCAAAAACCAATCAACTAtttactgacctttataaacaaAGCTa
aatccgccatcttgaaacatagttaattttaaaattgatacCCGCTAAGA
AACcattaaaaattaacgtcaGACGGGGCTAAATCATCCAAAATTAGACA
AAAAGTAGACACAGTGCTCTTGATGCATtcacaccgctattgagtagtgc
atTAAGATACCACTGATAAAAAACTCCTTCCAAACAATATTGTGGTTAAC
GGGAATTGAGAAACTTTCCCTTAAGTATATAAAGCTCAGTGATTTTATTA
TATACCCATTCTTTTCAGCTTTTGCAAAACCTGGAAAGATCACAATCGTG
GCCAGAGatccaaaatatcaaaaagtgatTGGCCAAAGAGGTGGATTGAG
TCGTATTGATAAAATTCAGCTCAATCGAATGTATTGTAATGACAATTATA
CCACCCCAAAACCCTGGACCGTAGGTAAGAGGACTCGAAAGAGGCTTATT
TTTTCTGGGACACAGAATCTCCCTAGTTCATGATATTTATTACGTAATGT
TTCTATGGAAACAACCCGGTTTTTGCCAAAGTcgtaaattttaaacaatt
tttctcAAGGTTAAAGTTTCCACTACAGGTGAAAACCGGgttttccgtag
aaaacattacgtcatgaaatcACGTCCTTTTGCTTTTAAAACAAGATACC
AAGGCCGAAGAGGGTCGGTACATGACTCTGGTTAGAGAATTGGCTCACCC
CCGATTGTTTTTAAAAGCAGGGTGGGATTTCTGGAACTCTATTGAGGTCT
TGGTAAGGTAAGGGATTTtgcgaattttgtctaaatttgccgaattcgcc
aaaataagttcccttaaggtatgtaGAGATTAGAGGCTAAGCATCGACTT
CATTCTAACTACAATCATGACCAAAatatatttagatttttgggtatttc
taacttttcagaatttttgggcGAGAACGGCCAATTTCtatttccatttt
attttatgagatatttcgatttggggacatttttcagtttctggatcctg
agatcctaaggtcgtaaaCCGTAAGTCAGTTGGAGTTCTGCACTCCAGAA
GTAAGTTAGAGCACTTAGAAATCATGTGTGATTTTTAAGACAGTTgtcaa
agcagttttttctgtgagacggaaaattTCATGATAGAGATATTTTGGTA
TACAGTGGCACCCACAGGCCACCATGGTTGGAGCCAAGGGCcagaaaaat
ttcagattttctaCCCCCTAGATTGGCTAGAAAGGCACTAAAACTTTTTA
ATCAAAACAAttcagaatgttcttaaaattcatacagcgaaaatatatat
atctaaaataggttgaaaaataaaaacataatgaACGTCATACTATGTAT
ATACAAGGCCATCAGCCATAAACACAGTTTTAATACGAGATTTCTTTCTG
ATGGAATTATTAATTCTAGAGAataaaataaccatttttaactgagacgg
aaaactttgacaaaattttctgtgagacggaaatccgtctgagacggaag
aattTTGACCGTAGATTTTTTATgcttaaaagattttttcccaACCCAAC
TTTTTCAGCACCGAAAGATTGCAAAGATAAAGACAAAGAAACATGTCGTA
GATTACGTAATGTTTGTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTC
ACATGTCGTGTCTGTTAAAAGAaacactttttgagttttaactaTACAGA
ACCTCGTGTAAAATAAACTTTAATCATACACaatattttttagttgtttG
TTTGAATTTCTAGCGTTTCCCTGAAGAATTTACCTTTTCGGCG

Coding sequence (CDS) from alignment at sc0000024:673197..680989+

>TCONS_00002962 ID=TCONS_00002962|Name=TCONS_00002962|organism=Clytia hemisphaerica|type=CDS|length=8127bp|location=Sequence derived from alignment at sc0000024:673197..680989+ (Clytia hemisphaerica)
ATGAAGATCGTTTTGCTTGCAACATTTTTGTGCGTCAATTTCTTTGCCAA
AACTTTTTCTCAAGAACAAGGTCCATACTTCGAAGGAGACATTATCCTCA
CACCCGATCAACAGGACGCCATTTTGGAACAGAAATCGAAAAACTCTTTC
GCATCGGTGAGAACGGGCCTTTGGTTGGACAAtggaaaagttcaaaaaat
tatCGAATACGGGATAGACTCTAAACTAGCCCGCTCCCCGATGGCCGTGC
GTGTGATCCGTGAGGCCGTTGaagaatatgaaaaattcacgtGTTTACGT
TTCAAAGAAGTGAGCGGACGTCCGAAAACTAAATATCACATGTATTTCTT
CATCGGACGGGGTTGTTTTTCGAACGTTGGACGTTTGGAGGGCGGCAACC
GAATCAGTTTAAGTGCAAATGGTTGTTGGACTAAAGGAATTGCTATCCAT
GAAATGGGTCATAGCTTAGgcTTCTTCCACGAGCAATCAAGAGTAGATCG
TGACAATTACGTTGACATCAAATGGGAAAATATGTTTGATGGAGCAAAGA
GGAATTTCGATAAATACTCAACAGAAAAATTGTATGACTTCGAAACAAAA
TATGATTATGAAAGTATTATGCATTATCCAgaaaacgCTTTTGCAAAACC
TGGAAAGATCACAATCGTGGCCAGAGatccaaaatatcaaaaagtgatTG
GCCAAAGAGGTGGATTGAGTCGTATTGATAAAATTCAGCTCAATCGAATG
TATTGTAATGACAATTATACCACCCCAAAACCCTGGACCGTAGCACCGAA
AGATTGCAAAGATAAAGACAAAGAAACATGTCGTAGATTACGTAATGTTT
GTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTCACATGTCGTGTCTGT
TAAATGAAGATCGTTTTGCTTGCAACATTTTTGTGCGTCAATTTCTTTGC
CAAAACTTTTTCTCAAGAACAAGGTCCATACTTCGAAGGAGACATTATCC
TCACACCCGATCAACAGGACGCCATTTTGGAACAGAAATCGAAAAACTCT
TTCGCATCGGTGAGAACGGGCCTTTGGTTGGACAAtggaaaagttcaaaa
aattatCGAATACGGGATAGACTCTAAACTAGCCCGCTCCCCGATGGCCG
TGCGTGTGATCCGTGAGGCCGTTGaagaatatgaaaaattcacgtGTTTA
CGTTTCAAAGAAGTGAGCGGACGTCCGAAAACTAAATATCACATGTATTT
CTTCATCGGACGGGGTTGTTTTTCGAACGTTGGACGTTTGGAGGGCGGCA
ACCGAATCAGTTTAAGTGCAAATGGTTGTTGGACTAAAGGAATTGCTATC
CATGAAATGGGTCATAGCTTAGgcTTCTTCCACGAGCAATCAAGAGTAGA
TCGTGACAATTACGTTGACATCAAATGGGAAAATATGTTTGATGGAGCAA
AGAGGAATTTCGATAAATACTCAACAGAAAAATTGTATGACTTCGAAACA
AAATATGATTATGAAAGTATTATGCATTATCCAgaaaacgCTTTTGCAAA
ACCTGGAAAGATCACAATCGTGGCCAGAGatccaaaatatcaaaaagtga
tTGGCCAAAGAGGTGGATTGAGTCGTATTGATAAAATTCAGCTCAATCGA
ATGTATTGTAATGACAATTATACCACCCCAAAACCCTGGACCGTAGCACC
GAAAGATTGCAAAGATAAAGACAAAGAAACATGTCGTAGATTACGTAATG
TTTGTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTCACATGTCGTGTC
TGTTAAATGAAGATCGTTTTGCTTGCAACATTTTTGTGCGTCAATTTCTT
TGCCAAAACTTTTTCTCAAGAACAAGGTCCATACTTCGAAGGAGACATTA
TCCTCACACCCGATCAACAGGACGCCATTTTGGAACAGAAATCGAAAAAC
TCTTTCGCATCGGTGAGAACGGGCCTTTGGTTGGACAAtggaaaagttca
aaaaattatCGAATACGGGATAGACTCTAAACTAGCCCGCTCCCCGATGG
CCGTGCGTGTGATCCGTGAGGCCGTTGaagaatatgaaaaattcacgtGT
TTACGTTTCAAAGAAGTGAGCGGACGTCCGAAAACTAAATATCACATGTA
TTTCTTCATCGGACGGGGTTGTTTTTCGAACGTTGGACGTTTGGAGGGCG
GCAACCGAATCAGTTTAAGTGCAAATGGTTGTTGGACTAAAGGAATTGCT
ATCCATGAAATGGGTCATAGCTTAGgcTTCTTCCACGAGCAATCAAGAGT
AGATCGTGACAATTACGTTGACATCAAATGGGAAAATATGTTTGATGGAG
CAAAGAGGAATTTCGATAAATACTCAACAGAAAAATTGTATGACTTCGAA
ACAAAATATGATTATGAAAGTATTATGCATTATCCAgaaaacgCTTTTGC
AAAACCTGGAAAGATCACAATCGTGGCCAGAGatccaaaatatcaaaaag
tgatTGGCCAAAGAGGTGGATTGAGTCGTATTGATAAAATTCAGCTCAAT
CGAATGTATTGTAATGACAATTATACCACCCCAAAACCCTGGACCGTAGC
ACCGAAAGATTGCAAAGATAAAGACAAAGAAACATGTCGTAGATTACGTA
ATGTTTGTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTCACATGTCGT
GTCTGTTAAATGAAGATCGTTTTGCTTGCAACATTTTTGTGCGTCAATTT
CTTTGCCAAAACTTTTTCTCAAGAACAAGGTCCATACTTCGAAGGAGACA
TTATCCTCACACCCGATCAACAGGACGCCATTTTGGAACAGAAATCGAAA
AACTCTTTCGCATCGGTGAGAACGGGCCTTTGGTTGGACAAtggaaaagt
tcaaaaaattatCGAATACGGGATAGACTCTAAACTAGCCCGCTCCCCGA
TGGCCGTGCGTGTGATCCGTGAGGCCGTTGaagaatatgaaaaattcacg
tGTTTACGTTTCAAAGAAGTGAGCGGACGTCCGAAAACTAAATATCACAT
GTATTTCTTCATCGGACGGGGTTGTTTTTCGAACGTTGGACGTTTGGAGG
GCGGCAACCGAATCAGTTTAAGTGCAAATGGTTGTTGGACTAAAGGAATT
GCTATCCATGAAATGGGTCATAGCTTAGgcTTCTTCCACGAGCAATCAAG
AGTAGATCGTGACAATTACGTTGACATCAAATGGGAAAATATGTTTGATG
GAGCAAAGAGGAATTTCGATAAATACTCAACAGAAAAATTGTATGACTTC
GAAACAAAATATGATTATGAAAGTATTATGCATTATCCAgaaaacgCTTT
TGCAAAACCTGGAAAGATCACAATCGTGGCCAGAGatccaaaatatcaaa
aagtgatTGGCCAAAGAGGTGGATTGAGTCGTATTGATAAAATTCAGCTC
AATCGAATGTATTGTAATGACAATTATACCACCCCAAAACCCTGGACCGT
AGCACCGAAAGATTGCAAAGATAAAGACAAAGAAACATGTCGTAGATTAC
GTAATGTTTGTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTCACATGT
CGTGTCTGTTAAATGAAGATCGTTTTGCTTGCAACATTTTTGTGCGTCAA
TTTCTTTGCCAAAACTTTTTCTCAAGAACAAGGTCCATACTTCGAAGGAG
ACATTATCCTCACACCCGATCAACAGGACGCCATTTTGGAACAGAAATCG
AAAAACTCTTTCGCATCGGTGAGAACGGGCCTTTGGTTGGACAAtggaaa
agttcaaaaaattatCGAATACGGGATAGACTCTAAACTAGCCCGCTCCC
CGATGGCCGTGCGTGTGATCCGTGAGGCCGTTGaagaatatgaaaaattc
acgtGTTTACGTTTCAAAGAAGTGAGCGGACGTCCGAAAACTAAATATCA
CATGTATTTCTTCATCGGACGGGGTTGTTTTTCGAACGTTGGACGTTTGG
AGGGCGGCAACCGAATCAGTTTAAGTGCAAATGGTTGTTGGACTAAAGGA
ATTGCTATCCATGAAATGGGTCATAGCTTAGgcTTCTTCCACGAGCAATC
AAGAGTAGATCGTGACAATTACGTTGACATCAAATGGGAAAATATGTTTG
ATGGAGCAAAGAGGAATTTCGATAAATACTCAACAGAAAAATTGTATGAC
TTCGAAACAAAATATGATTATGAAAGTATTATGCATTATCCAgaaaacgC
TTTTGCAAAACCTGGAAAGATCACAATCGTGGCCAGAGatccaaaatatc
aaaaagtgatTGGCCAAAGAGGTGGATTGAGTCGTATTGATAAAATTCAG
CTCAATCGAATGTATTGTAATGACAATTATACCACCCCAAAACCCTGGAC
CGTAGCACCGAAAGATTGCAAAGATAAAGACAAAGAAACATGTCGTAGAT
TACGTAATGTTTGTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTCACA
TGTCGTGTCTGTTAAATGAAGATCGTTTTGCTTGCAACATTTTTGTGCGT
CAATTTCTTTGCCAAAACTTTTTCTCAAGAACAAGGTCCATACTTCGAAG
GAGACATTATCCTCACACCCGATCAACAGGACGCCATTTTGGAACAGAAA
TCGAAAAACTCTTTCGCATCGGTGAGAACGGGCCTTTGGTTGGACAAtgg
aaaagttcaaaaaattatCGAATACGGGATAGACTCTAAACTAGCCCGCT
CCCCGATGGCCGTGCGTGTGATCCGTGAGGCCGTTGaagaatatgaaaaa
ttcacgtGTTTACGTTTCAAAGAAGTGAGCGGACGTCCGAAAACTAAATA
TCACATGTATTTCTTCATCGGACGGGGTTGTTTTTCGAACGTTGGACGTT
TGGAGGGCGGCAACCGAATCAGTTTAAGTGCAAATGGTTGTTGGACTAAA
GGAATTGCTATCCATGAAATGGGTCATAGCTTAGgcTTCTTCCACGAGCA
ATCAAGAGTAGATCGTGACAATTACGTTGACATCAAATGGGAAAATATGT
TTGATGGAGCAAAGAGGAATTTCGATAAATACTCAACAGAAAAATTGTAT
GACTTCGAAACAAAATATGATTATGAAAGTATTATGCATTATCCAgaaaa
cgCTTTTGCAAAACCTGGAAAGATCACAATCGTGGCCAGAGatccaaaat
atcaaaaagtgatTGGCCAAAGAGGTGGATTGAGTCGTATTGATAAAATT
CAGCTCAATCGAATGTATTGTAATGACAATTATACCACCCCAAAACCCTG
GACCGTAGCACCGAAAGATTGCAAAGATAAAGACAAAGAAACATGTCGTA
GATTACGTAATGTTTGTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTC
ACATGTCGTGTCTGTTAAATGAAGATCGTTTTGCTTGCAACATTTTTGTG
CGTCAATTTCTTTGCCAAAACTTTTTCTCAAGAACAAGGTCCATACTTCG
AAGGAGACATTATCCTCACACCCGATCAACAGGACGCCATTTTGGAACAG
AAATCGAAAAACTCTTTCGCATCGGTGAGAACGGGCCTTTGGTTGGACAA
tggaaaagttcaaaaaattatCGAATACGGGATAGACTCTAAACTAGCCC
GCTCCCCGATGGCCGTGCGTGTGATCCGTGAGGCCGTTGaagaatatgaa
aaattcacgtGTTTACGTTTCAAAGAAGTGAGCGGACGTCCGAAAACTAA
ATATCACATGTATTTCTTCATCGGACGGGGTTGTTTTTCGAACGTTGGAC
GTTTGGAGGGCGGCAACCGAATCAGTTTAAGTGCAAATGGTTGTTGGACT
AAAGGAATTGCTATCCATGAAATGGGTCATAGCTTAGgcTTCTTCCACGA
GCAATCAAGAGTAGATCGTGACAATTACGTTGACATCAAATGGGAAAATA
TGTTTGATGGAGCAAAGAGGAATTTCGATAAATACTCAACAGAAAAATTG
TATGACTTCGAAACAAAATATGATTATGAAAGTATTATGCATTATCCAga
aaacgCTTTTGCAAAACCTGGAAAGATCACAATCGTGGCCAGAGatccaa
aatatcaaaaagtgatTGGCCAAAGAGGTGGATTGAGTCGTATTGATAAA
ATTCAGCTCAATCGAATGTATTGTAATGACAATTATACCACCCCAAAACC
CTGGACCGTAGCACCGAAAGATTGCAAAGATAAAGACAAAGAAACATGTC
GTAGATTACGTAATGTTTGTAAAGCCGACGCCGTCAAGAAGATTTGTCCC
GTCACATGTCGTGTCTGTTAAATGAAGATCGTTTTGCTTGCAACATTTTT
GTGCGTCAATTTCTTTGCCAAAACTTTTTCTCAAGAACAAGGTCCATACT
TCGAAGGAGACATTATCCTCACACCCGATCAACAGGACGCCATTTTGGAA
CAGAAATCGAAAAACTCTTTCGCATCGGTGAGAACGGGCCTTTGGTTGGA
CAAtggaaaagttcaaaaaattatCGAATACGGGATAGACTCTAAACTAG
CCCGCTCCCCGATGGCCGTGCGTGTGATCCGTGAGGCCGTTGaagaatat
gaaaaattcacgtGTTTACGTTTCAAAGAAGTGAGCGGACGTCCGAAAAC
TAAATATCACATGTATTTCTTCATCGGACGGGGTTGTTTTTCGAACGTTG
GACGTTTGGAGGGCGGCAACCGAATCAGTTTAAGTGCAAATGGTTGTTGG
ACTAAAGGAATTGCTATCCATGAAATGGGTCATAGCTTAGgcTTCTTCCA
CGAGCAATCAAGAGTAGATCGTGACAATTACGTTGACATCAAATGGGAAA
ATATGTTTGATGGAGCAAAGAGGAATTTCGATAAATACTCAACAGAAAAA
TTGTATGACTTCGAAACAAAATATGATTATGAAAGTATTATGCATTATCC
AgaaaacgCTTTTGCAAAACCTGGAAAGATCACAATCGTGGCCAGAGatc
caaaatatcaaaaagtgatTGGCCAAAGAGGTGGATTGAGTCGTATTGAT
AAAATTCAGCTCAATCGAATGTATTGTAATGACAATTATACCACCCCAAA
ACCCTGGACCGTAGCACCGAAAGATTGCAAAGATAAAGACAAAGAAACAT
GTCGTAGATTACGTAATGTTTGTAAAGCCGACGCCGTCAAGAAGATTTGT
CCCGTCACATGTCGTGTCTGTTAAATGAAGATCGTTTTGCTTGCAACATT
TTTGTGCGTCAATTTCTTTGCCAAAACTTTTTCTCAAGAACAAGGTCCAT
ACTTCGAAGGAGACATTATCCTCACACCCGATCAACAGGACGCCATTTTG
GAACAGAAATCGAAAAACTCTTTCGCATCGGTGAGAACGGGCCTTTGGTT
GGACAAtggaaaagttcaaaaaattatCGAATACGGGATAGACTCTAAAC
TAGCCCGCTCCCCGATGGCCGTGCGTGTGATCCGTGAGGCCGTTGaagaa
tatgaaaaattcacgtGTTTACGTTTCAAAGAAGTGAGCGGACGTCCGAA
AACTAAATATCACATGTATTTCTTCATCGGACGGGGTTGTTTTTCGAACG
TTGGACGTTTGGAGGGCGGCAACCGAATCAGTTTAAGTGCAAATGGTTGT
TGGACTAAAGGAATTGCTATCCATGAAATGGGTCATAGCTTAGgcTTCTT
CCACGAGCAATCAAGAGTAGATCGTGACAATTACGTTGACATCAAATGGG
AAAATATGTTTGATGGAGCAAAGAGGAATTTCGATAAATACTCAACAGAA
AAATTGTATGACTTCGAAACAAAATATGATTATGAAAGTATTATGCATTA
TCCAgaaaacgCTTTTGCAAAACCTGGAAAGATCACAATCGTGGCCAGAG
atccaaaatatcaaaaagtgatTGGCCAAAGAGGTGGATTGAGTCGTATT
GATAAAATTCAGCTCAATCGAATGTATTGTAATGACAATTATACCACCCC
AAAACCCTGGACCGTAGCACCGAAAGATTGCAAAGATAAAGACAAAGAAA
CATGTCGTAGATTACGTAATGTTTGTAAAGCCGACGCCGTCAAGAAGATT
TGTCCCGTCACATGTCGTGTCTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001628XLOC_001628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002962-exon-sc0000024-1491911889:673197..673319TCONS_00002962-exon-sc0000024-1491911889:673197..673319Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:673197..673319TCONS_00002962-exon-sc0000024-1510915933:673197..673319Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:673197..673319TCONS_00002962-exon-sc0000024-1575043694:673197..673319Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1491911889:674179..674225TCONS_00002962-exon-sc0000024-1491911889:674179..674225Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:674179..674225TCONS_00002962-exon-sc0000024-1510915933:674179..674225Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:674179..674225TCONS_00002962-exon-sc0000024-1575043694:674179..674225Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1491911889:675288..675446TCONS_00002962-exon-sc0000024-1491911889:675288..675446Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:675288..675446TCONS_00002962-exon-sc0000024-1510915933:675288..675446Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:675288..675446TCONS_00002962-exon-sc0000024-1575043694:675288..675446Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1491911889:676375..676507TCONS_00002962-exon-sc0000024-1491911889:676375..676507Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:676375..676507TCONS_00002962-exon-sc0000024-1510915933:676375..676507Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:676375..676507TCONS_00002962-exon-sc0000024-1575043694:676375..676507Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1491911889:677047..677153TCONS_00002962-exon-sc0000024-1491911889:677047..677153Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:677047..677153TCONS_00002962-exon-sc0000024-1510915933:677047..677153Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:677047..677153TCONS_00002962-exon-sc0000024-1575043694:677047..677153Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1491911889:677908..677976TCONS_00002962-exon-sc0000024-1491911889:677908..677976Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:677908..677976TCONS_00002962-exon-sc0000024-1510915933:677908..677976Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:677908..677976TCONS_00002962-exon-sc0000024-1575043694:677908..677976Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1491911889:678692..678790TCONS_00002962-exon-sc0000024-1491911889:678692..678790Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:678692..678790TCONS_00002962-exon-sc0000024-1510915933:678692..678790Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:678692..678790TCONS_00002962-exon-sc0000024-1575043694:678692..678790Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1491911889:679465..679620TCONS_00002962-exon-sc0000024-1491911889:679465..679620Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:679465..679620TCONS_00002962-exon-sc0000024-1510915933:679465..679620Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:679465..679620TCONS_00002962-exon-sc0000024-1575043694:679465..679620Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1491911889:680755..680989TCONS_00002962-exon-sc0000024-1491911889:680755..680989Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1510915933:680755..680989TCONS_00002962-exon-sc0000024-1510915933:680755..680989Clytia hemisphaericaexon
TCONS_00002962-exon-sc0000024-1575043694:680755..680989TCONS_00002962-exon-sc0000024-1575043694:680755..680989Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002962-proteinTCONS_00002962-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:673197..680989 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.88903	2.07127	1.88863	10.1391	1.66456	1.09187	152.206	140.967	15.6889	19.0333	108.644	100.63	123.681	134.785	0.76011	0.550763	58.6236	91.2005
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR003582ShKT_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00002962 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.371e-34
Identity = 89/233 (38.20%), Postives = 120/233 (51.50%), Query Frame = 2 
Query:  179 FEGDIILTPDQQDAILEQKSKNSFASVRTGLWLDNGKVQKIIEYGIDSKLARSPMAVRVIREAVEEYEKFTCLRFKEVSGRPKTKYHMYFFIGRGCFSNVGRLEGGNRISLSANGCWTKGIAIHEMGHSLGFFHEQSRVDRDNYVDIKWENMFDGAKRNFDKYSTEKLYDFETKYDYESIMHYPENAFAKPGKI-TIVARDPKYQKVIGQRGGLSRIDKIQLNRMY-CNDNYT 871
            F+GDI+L          QKS+N       GL   N +    I Y +   L  +  A   I  A E +   +C+ FK   G      ++ F    GC+S VG    G  IS+   GC  K I  HE+ H+LGF+HEQSR DRD+YV+I W+ +  G + NFD Y    + D  T YDYES+MHY   +F K   + TI A+ P++  +IGQR   S ID  +LNRMY C   +T
Sbjct:   55 FQGDILL----------QKSRN-------GLRDPNTRWTFPIPYILADNLGLN--AKGAILYAFEMFRLKSCVDFKPYEGESS---YIIFQQFDGCWSEVGDQHVGQNISI-GQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMYNCTTTHT 264
The following BLAST results are available for this feature:
BLAST of TCONS_00002962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A4.371e-3438.20Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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