TCONS_00002961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002961
Unique NameTCONS_00002961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002961 ID=TCONS_00002961|Name=TCONS_00002961|organism=Clytia hemisphaerica|type=transcript|length=1064bp
TTTTAGTACATGATTGATATCATTTGAATCAAGATGAAGATTGTTTTGCT
TGCAACATTTTTGTTGTGCGTCAATTTCTTTGCCAAAACTTTTTCGCAAG
AACAAGGTCCATACTTCGAAGGAGACATTATCCTCACACCCGATCAACAG
GACGCCATTTTGGAACAGAAATCGAAAAACTCTTTCGCATCGGTGAGAAC
GGGCCTTTGGTTGGACAAtggaaaagttcaaaaaattatCGAATACGGGA
TAGACTCTAAACTAGCCCGCTCCCCGATGGCCGTGCGTGTGATCCGTGAG
GCCGTTGaagaatatgaaaaattcacgtGTTTACGTTTCAAAGAAGTGAG
CGGACGTCCGAAAACTAAATATCACATGTATTTCTTCATCGGACGGGGTT
GTTTTTCGAACGTTGGACGTTTGGAGGGCGGCAACCGAATCAGTTTAAGT
GCAAATGGTTGTTGGACTAAAGGAATTGCTATCCATGAAATGGGTCATAG
CTTAGgcTTCTTCCACGAGCAATCAAGAGTAGATCGTGACAATTACGTTG
ACATCAAATGGGAAAATATGTTTGATGGAGCAAAGAGGAATTTCGATAAA
TACTCAACAGAAAAATTGTATGACTTCGAAACAAAATATGATTATGAAAG
TATTATGCATTATCCAgaaaacgCTTTTGCAAAACCTGGAAAGATCACAA
TCGTGGCCAGAGatccaaaatatcaaaaagtgatTGGCCAAAGAGGTGGA
TTGAGTCGTATTGATAAAATTCAGCTCAATCGAATGTATTGTAATGACAA
TTATACCACCCCAAAACCCTGGACCGTAGCACCGAAAGATTGCAAAGATA
AAGACAAAGAAACATGTCGTAGATTACGTAATGTTTGTAAAGCCGACGCC
GTCAAGAAGATTTGTCCCGTCACATGTCGTGTCTGTTAAAAGAaacactt
tttgagttttaactaTACAGAACCTCGTGTAAAATAAACTTTAATCATAC
ACaatattttttagttgtttGTTTGAATTTCTAGCGTTTCCCTGAAGAAT
TTACCTTTTCGGCG
Run BLAST on NCBI

transcript from alignment at sc0000024:662498..680989+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002961 ID=TCONS_00002961|Name=TCONS_00002961|organism=Clytia hemisphaerica|type=transcript|length=18492bp|location=Sequence derived from alignment at sc0000024:662498..680989+ (Clytia hemisphaerica)
TTTTAGTACATGATTGATATCATTTGAATCAAGATGAAGATTGTTTTGCT
TGCAACATTTTTGTTGTGCGTCAATTTCTTTGCCAAAACTTTTTCGCAAG
AACAAGGTAAAGAGATTACAATCGTGGACAAGAGGTTGTAGACTTTCCaa
ggttgaaaaattttcaaataaactctgaaaacccatttttaccagaagcc
aatgttgtttttattggatgAGATATTGGGTGACAAGTCCAGAAGCCAAA
TCCACTCAACATTGAAGAAAACATTATTGAAAAGTCTTCAGGTCGTTTTT
TTGTCTGAGATTGAAGGTTCAATGCGGAGTTTTGcacttcaacttttttg
agaagCACTTTTAGGGCTCTCTGGTGCAAACAACTAGCTGTGTGGCTAAC
CATTTGAaacattttcagtcattttcagtccaAAACTTTCTCAAAATTCC
TCAAAACTGTTTCCAAAATTCCCCCAAAACaggtaccctacgagggactt
attgatctattttggtgttttgtaGACCCTTCCTGGAACTGGTGGAATTA
ATAAATACGGATCAAAGGTCAAATgctatttctttacatttttcCAAGCT
TAACAGAATTtgtatagaattttttttttggatttcactAAAACAAACCA
GAAGACTTACAGTGCTTGAATAATACTAATAGCTCTAAGTAAATGCTGCA
TCAAAGCATCCTCTGACGGTGGTATTTGTTCAATATCCTTGCCCTTCACT
GTAAATAGCAGTTGCCTACAAGAGTTGACGTTGGTACATGGACTAGCGCG
ATCATACAACAACAAAACGTATCTTTGGATCAGATCAAAATCTTGTTGCT
CGATTTCTCCCGAGATTAACCTATAAAAATAGAGGAAATGATAAAATTCC
ATCATCCACGAACACATAGAGGCAGATCGGATTTTATCATCATTCTCTAC
TCTATAAAATTAAATTAAGTACATTACGAATCTGCAATACCTCACAAAAG
CTCCAGTCACATCTGGATACACATCCCATACATTTCATGcggtaaaaatt
gaaaatacgcGTGTCCGCTTCTTCATGGTTCGAAGGACTGAATCGATTGA
CGGTCTGCAATAAATTTGATGTTACACCCTTCCCTTTAGTCGATACAATT
ATCGGATGTTTGATCGTAGCAAAATTGTCGGCAAGCAATTCAAACAGCTC
CGTTTTATTTTTACCATCTCtcatgaaagatgaaaaatcttTAGGGACTG
GAGTGTTATGACGAACTGCGGTACGTATTCCTTGGCCACGAGACTCTCGT
GTCTGCGATTTCAGGCTTGATTCTTTGTAAATGTCAAAAACAACATCAAC
ACGTTTGGTGTTTATTCCTGCTTCAAATACCTTCTTTTTCAGCTTGTTGG
AGTAGCAATTGGAGGTGGTCGATGTCTTAGCTGGAGGATTCATATTCACC
AATGCTGGACCGTCGATAATTTTCATGTCGACTTGAGGTGCCTCCTTGTC
TGGTTCGCCTACATCTTTCTTGAGAAAAGTTACAAAATCGGACTTGGCAG
TGCATTTCCTCAGTCTGCCATATTCTGAGATGGCGATAGCGTACCCATGG
TTCTTGTGGGAAAAGAAGTTTTGAAGATCTCCTTTTCCATGACTGGCAAG
CGATAAAGAGTCAAGAAAAAAGTCTCCTGTCTGCAGTTAAGCTTTGAATT
CTTTCTTTGGATTTGGCTCACATGGACAGATTGGACTGCTTGAAAATGAG
GAGCTTGTTCTTTGGAATCACGTCATACAGGGACTTCTTCTTGCTTTGGA
GTCGATCTTTGACGAAggtttcaaattgatttttaccAGTCTTCTCAGCC
TTCTTTTCTTGGTTTGTAGCCTCTGACGATAGAACAGTTTTGGATGAGAT
TTGAACAAGGTTTGTTTCCTTTTCTATGAACGGATTACCTATTTCTTCAA
CGGCGACTACAAGTGAATTGATATCCTTACGAAACTGCTTCTCGAATGCT
GGAGTATCTTCATGATGTTTCAAATCAGCTTCATCTTCATCCGACGCGAT
ACGATCACTTCCGCACATCTCAGCGATGACGGGGTTGCTGACTGACCATC
TAAGTAGGGCTTTGGGGTTGTCAAGTAAACCAACTGCGCCTCCACGAATT
TTGACAAGCTTGTTGTTTTGTTCGTGGGCCTGATCTATTCCAATGTTTGA
AAACGGCCGGTTACTACGTTTGATGGTAAAGTAtccattttcaaatttgc
tTCGCGTCGAGGTGTCaagtttttccaaatcattgATGAAGACTGGAAGC
CAACGGGCGTAATGCGTATGATCCATTGAAAACATCTATTGACATATACG
TTTCACAGCGTTTAAGAGTGAACTGAAGTCCGCATCGCGTAGGCTCTTGA
caaaatcgaataagagaacTTGCATATCGATCAGGCCAAACCAAAAACGA
GCGTTAGCATTTTCTGACAAGCAAGATGCTTTCCAACTTTCAAAATCAGA
AGTTGTAGTTTGTTGATCAAATGCGTTTCTTGCAAGTCTCGTCCAAGCAG
CAAGTGATATTTGATGTACGTACCGCGTTCTTTTAATTTTAGATGCGGAT
AGGAAANNgtgcattttccccaaaattttctatccttttcgtgcaaaaaa
tggtcaaaattctagcatttttggtcaaaatatctagatttttcaaaaat
tttctgaaatttctacccttacagtgcatctctagttttacCGACCCTTA
CAGCGCATTTTAAACATactggaaaaggtacccttaggacccgcacatac
ccgtcggtctttttgcccagctgcccccccccgggctatTGCATCTATGT
AGGCCATTTCGATGTGCAGAGGACCCATCATCCAGATGACATCACTGTAT
CTGTCGTTGTACATCCACTGCACCTTCTTCCCCAATGTGTAAACTGGTTG
ATCTGCTGTGATGATAACTTTTTGACCAGGGTTTAGAGAGTAAGTGATGC
TTTGGACAATTTCGATGCAATGACGGAAGATAGCTGTCGAGTTGATTGAT
TCGTCTATAAGCGGGAGGAGACATGATCTGGTTTTTGGCATCGACGTCGC
CGATTTTCTTCCAAAAAGGCAGAGAATGACACCCGATCATCTAGCTTTTC
TGTATCCATTGGAGCTGTTGAAATTTTGTCCACCCATTATTTCTTTAGAG
CACTCGCTGATGAGGTTGGTTGAAGCCTTTCCGTCAAGTGGTTCTGCTTT
GTAATCCTTGGTTGGTAGAATGTTTGTGTACGACTCAGGTAAAGATATAT
ATACTGTACTGTGATCTTCCGTGTATTCGAACACTGGTCGTGTGGATGTG
CTGGATTCTGGGAACTGGAAAATGGATATTGTTGTTCCATGAAAAGATGA
TTTTGCCATGANTGGATTATAAGAACTGGAAAATGGATATTGTTGTTCCA
TGAAAGATGATTTTGCCATGTTTGATTTCGGATCATTGTCCATGTTGTCG
ATGGCAGAAACGAAAAATTCGCCAGGCTGCAAGGATGGTGGTAGTACTTT
CTTTTCCTCgcaatattttttacaaatcgTTTTAGTGATATTGTTCTCGA
TAGTAAAAACCCGATCATATGATATACTTAGACCTTTATCGTGCAGTTCT
TCGACGATTCTTTTTTCTCGTGTTTGTGAGTGAACTGATAGTCCGATCAT
AACCGGTAAAGGTGGTTCGTTTGTAGTTGAGTGTCGAATGTGTTCACTAG
TTCGCTTTGTTTTCACTGAGTTGAATTTAACGAGTTGAGAAATTTTCAGT
GCCAGATCTTCGGTTGCTTTTGAGATTCAGCCTGGTCACGTTTACGCAAT
CTTGAGAGGAACCGTATTTTGTTAAGATTTCTTGGTATTTGACGCGTAGA
TCCTCGATCATGAAAACAGGGGTACCccaaattttgtgaatttaacCATG
CTGCAAAACAAACTCAATAGCTTTTATTGGCTTTATTTTCACGAAAAact
gtaagcaaaaaagttgttcaagaTGAAATTTCCTTTCTAACGGTATATAA
TATTTGGGGGGTTTATAActctacatttttttgaaaatttttgatgacgt
cacaagtcaaCTTCAGAAGCTTGTAACTTTTATTTGCTTCGTTTTCAGAA
TAAactgtaagcaaaaaagttgttcagaattaaattttctttccaacAGT
ATATATACTTGATGGTTTGAACACCTTaaaaaaaagtgctgacgtcagca
gtcACGTGGTTTTCAGATGTGtctctgtcaatttttttgttcagatTATA
ATTGTGCATGTCTGTGCCAAGTTTCCTTTTTTCACAAACTGAAGTATTGT
TATGATATTTTGGTCTAATAGAGTAAACTAGAAAAAAGAAACAGAAAGTA
AAGCGGAAACATGTTTATATaaagcaaaacgagatgaactATGAATTATC
CACCTTCCAAGCTTACGCACTAATCTAAACTAAAGagttttgtttattta
tggCTTTAAAAACGTAATGTCATCATTTGCATCAAATGCATCAAAAGTAT
TTGATTGACATTTGATGATAGTATTTTCTTCTCCCCATAAAGCAATAATA
ATATAGATTggcttttgattttgattggctATTGAGactttttttcatat
ttgcaTATTTGCTATAAAAGATGCATTTTACAAACCGTTTCATATTGTTT
TACTCTGAAGCTGAAAAGTTCCTGGACAGGTGCCCTCGGCGCACTTCATT
GATTATTGTGAAAATACAGAAATTTGGAGCTTTAGCAAAGGACAGTAAAA
GTTTTACGAGCTGAAGATTGCTTTATCTAAGTTAAAATCAAGTTCATATA
TAcaaatttattcaatttatacAAATTGGTATAGTTTTACTCCAAggaaa
tacaaaatcaatttaattaaGAATTTGCTAAGTAGGGCATGGAAGATTTG
TTCCAACGAACGTCTATTTCTCAGTGACTGGGAAGTTATCAAACGAGCAT
TGGTTAAGAATAAGTATCCTGAAAAACTACTGATAGCAATGTGTAagaat
tttgtacaaaaaatgaaGTCTAgcgatgaaaatgaaagtgtcgCCACTGT
TGCAAAGAAAGAAGTGAAACTGTATTTACCTTTTCATGGTAAATTATCTG
ATGTTCTTCATAAGCAGCTAATTTCGTTATTAGCTGAGACCTACCCACAA
GTTGACCTAAAGATCGTTTTCCGCACTACGTTTCGACTCTCAAATCTGTT
TACTTTCAAAGATAAAATACCTCTAAGGTTACGTTCATTTGTTGTGTACG
GAGTGCACTGTACAGATTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTGCTTGTAAGCTAACATTTGCTTGTGATCATGATACAAG
AAGTATCGAAACGTCAAggatgaacaaaattttgttttttgtcttcactt
tttttttgagaagtTCATATATCTCCTTTGTATAGCAATGGAttttattt
tagcgatttcAAAGGCTACTTCAAAAGAAGATATCAAAATGGTAGTCGGA
GATACGGACATTCGAATTATTCAACGGAACCAACCGAACGGTCCGGAACA
CGTTATATGCGGATTACTGGGTCAAAAGACTTACAAGGAAGAAACCAACG
AAAACTTTGTCAATCTGGTGGCTGTTTGCGAGAAAATTGCCGTGGAAAAC
ATGGACTCTCATCATTTAAATGTTGTTGGACAAATGTGAATGTTGTGTGT
GGGAAGAAAATTTCGCTGAATAAAAACTCTCTGTGGAGGAATTTTAATGT
AGTTGATTGATTTATAGTAGATTTGTAAACGTGATCTTTTattgaaacct
tttttccaacAAAATCTTGGAGTATATAAGAGTTAGTAagttaaagaaaa
atgttttaagttttatttttataagagttAGAATATACCATTTTAGGGCC
CATTTTACTTCGAATACCTTATCgcccttatcggggaaaaaatgtcggag
ttatatttagtcggggtttttgttcgtcggggaaaaatttcgtcaccccc
tcaaaattttcgtcaatttcccccgacatttttttcccgataaggtaaac
gccccctcgaataaacgcccctcctaaaatcaaagaaatcaatAATTCGA
AGTAATGCGGTTATTGAAAAGATGTTTTGTAAATAATTTGTAATTTTGGT
GCAAAAGTGAAATCGTAAAATCGTAAAATTTTATTCTGAAGATCATTGAT
TTTAAAcaaggtgaaaaaaaatttggaatatgattttttttgggtgtttt
tcagcctttttgagtgattttaggccaaaaaatgAGTATTTTAGATAACA
aataattttagcaatttttctttaaccctttaacttaagtaccacggtca
tttttttttttaactttgttaaaggaaatcgctagttcaaattttaaagg
cttatatctccggatctataAGGAGTTAGAAACTTGTTCATAGCTCGTTG
GaaagcttagagtctcctctttcttttaggcgTCTTCGACACCACTTGAT
TTAGGAGAGCCAGGGTGGGTGGCGGTGAAGGTGGGGGTAGGTAAAGGACC
TGCCTGACGGACCTGCCTGAATAATAGAAAGAAGGCTGGTGGTGAAACTT
TAAATTAATtcgacagaatcaagtaaagcagggccaattttggaggttct
tgaatcactcgttgaccaaaactGGTAAAAAAAAACGGTTAGAATCTTAG
AAAAgtcgatttttgtcaaatttttgcatattttgactttttggcttaaa
atctcgctggaaaaagtcacttttgattttctttttgcttgaccatgaaa
cccaatgcaattcctacgagttagaccaaaaatgacgatttttaactaaa
actgggcattacaggatgCCACTCCTATATAGCCAATGTGTAGTATACTC
GTCATTGGTACTTAAAGTGTTaaggtctatttcaaattagctggcagtgt
tttttcaaagctCAATAGCTTTTGGTAGAATTTCTTATAGAATGATgcta
tgatttatttttgtatcagaaactcttagaacgtcataaatgtgaaaaaa
gattttaataaaaaaaaaaacagcttaaaactGGTTAACTTAAAAAAGGg
cttttttttgttgttttttgatgattttggaaGTCAATaaataaggtaaa
aattaaaataagaataaactaaaaataactTGGGAAACGTTGTGCTGCGG
CGAAGTAATTGTGAAAACTTTTGTTAGGTCATTTCGTTATAGCGAGCCAA
GAAGGCTGAcgagattttttgaaaaggagtcAAAAGTTCCTTCGTATAAG
AAAACACAAAGAATGACAAATATGTATTCCTTCTAAATTAGGGGAACTAT
GATATGTCATGGAGCGACTATAAAATAGGAtagctacgtcatatcttcct
tcgtttcgagcgtaaaaaaCTCCTACTCAAGAGTAAGGCCTGAAAGCCTG
TAGACTACTTACTATAAATACACAAGTCAAATAAACACTACAGATAGGGA
AATTCCCAGGTCGTTCGTTCGCTTATCACGAGAGAGCCTTTAAAAAACGT
GAAATTTGATAGTCCGAAGCTATGTCCCTCTGCCATAAAGTAAACAGTAA
GTTTATTtggtatttgacgtcaatcgataTTTTGATGATCAGACCAAGGa
attattatacactggatatacaagtaactgATTTTCGCCggtttctcatg
ttctagctatgtccgcagtaatgacattattgttcacccgtCGTCCATCA
GTAAATGATATTTCGTAGCATTTTAATTACATTTTCATCGGAAAttactc
atccaattcccataAGAGACTTAAATTTTTCCTCTGGGAGTCAGATTCGT
CTATTTAATTACCAATTATATGTCGTTAtttattattcaaaaaacatttc
aacaaatatttttcagcataagcttttcgttttattaaaaaacatcatca
gtgcATATACAAGTAAATAACGAAAAgcttatgctgaaaaatatttgttg
aaatgttttttgaataataatttattttctggctattttattacaacata
tgtcgttatgacgtttcaagttgtgagaaagatgcaaaagacatgttatg
tataagaaattgaatgttgacaccagaaactttcaaacttcaacctaaaa
aaaaaccccttgccaccacgtgcctcaaaaagattttcatatcacagtgg
agccaagacactcaaatCTTGTGTATGTAAATTTTAGCTCTTCTCTGATC
agtgttggaaagatatttccaattgaaaatttcgtgtcactctaagcatt
ttgtttgacttttcttgtctaatgatgtttttctcacaccaaatttcata
aatgtatccggcttggtattctagccttattttcaaactttttgactgaa
aaggttaaaaaagAAAGGgctagaaaactttttaaaaatatgattataag
accttcgagccgccatgacaggtgtcctttgcggacaaagctagaacatc
aattgttttctgaaacaattgaaaaacaatgctcaatctccatcgtttta
tgaggtGGGTAGAAAACAGCACCTTACTCCAATACAAATAAAGAATTTGT
TAGAAAACCCTAAAAATCGATGGCTACAtcgaaaaatagaaattaaGTTC
ATTCAAGTATCCTAAATTATCCTaaactatttttatttcttgcaTACCTT
GTACACAGTACAAAATTCAGTACAAGGCTTGCGAAGTTACGAACGCTTGA
TGAACTAGTAAAAAGAAGTTTTCTAATTGGAAAAATTTCCCTGCAACATT
GCCAAGTTCAAAGAAGGTTATCGTTGCCTTTTTCTTATTCATCGATTATC
AAAGGACTAAGACTTTTCTTCAGATTagggaaagattcgaattataaaga
gtaatttaaaccactttccagctgaggggaccaaaatattagttcgaatt
atagaaagattcaaattaaaGTGCGTCGACCGTATTttcctaaaagaaaa
atattcatcCGGTCGAAAACTTCATCAAAGCCTTGGGTCAAACAGGTATA
TGAAGgacttttttatatatcaatGGGCCAGATGGGAGTGTGTGGTTATT
AGCGATGGGCTTAATCAGATCTGAATACATATTGGTAAAAGCTATTATGT
CTTTAAAAAGGCTGTTCCATTTATTTCTATACAGGGGGTGAGCGAACCAT
ttaaaggcaaaaaaaattcttagacTAAATGTGTGCATGCCCCATGGAAA
ATGGTATAACTTGCAAACAAACCTTTGCAAAATCCTTTTCATGTCTTAAA
AGTGAgagtggacgaactaaaatcactcttttaccccttggaaattttag
aataatctTTTAATTcctggaaaaagaaaataatactcCCTTGAAAATTC
TTCTCCAATTACAGCTGGAAATTTTCGTTCACCCCCTTTGtatcagtggc
gttgtggcaggggagggccggggggccatggcccctcctagcggagcttt
tttgaaggggcgccgaagagtGAGGGGCGCCAGAAGAGATTTTTTTAGAC
Gcctcaatcttaaaaatcatactttatgcgccttaaaccgcgccccagga
ccaattttacaattttaccaaTTTCGCTTCGGTCGTATTACACATTAATT
CTTTAAGTTTATTTTCATTCTAGCAAGTGCcaaatttgtctttttttatt
tagtgatttacagtagggtatcttggcagtcgattttcaaaaaaaattta
gtcaACCCCAACCATGGGGCCCCGTTTatcccttttccattcatcaaaga
tatatctacttttatccactaaatattcattatgcctaggcaaatgaatt
agtaaaagttttgaaactggtgggtggggtgccactttggaaaattgggg
gggggggcgccatttcaaagaaattgactttggcccctccagaaaaattt
tcccacaacgccactgcttTGTattgatataaaatggaatggcccaatgg
aCGGGGAATTACCCAGGTATCGCGTTCTTTGTCTGATTTTAATGGGTTCT
TTGCCGTACAAACTTTTCGGTTCCATGTTCTGCACCCGTTACTATTCACT
GGATCACGTCACATATGGAATTTGATAgttttcagtcaaaaaaaattcct
aTTTCAGGACAAAAACGAAGCCCACTGtccaaataacattttcaaaacaa
gacTTTAAAGAAAGCGGAGtgcaaaatatagaaaaatgtATAAAGAGGGT
CTAAAAATTGAATGGTTTTAGTACATGATTGAATATCATTTGAATCAAGA
TGAAGATCGTTTTGCTTGCAACATTGTTGTGCGTCAATTTCTTTCTAGCG
GAGctttttttgaaggggcgccgaagagtGAGGGGCGCCAGAAGAGATTT
TTTTAGACGcctcaatcttaaaaatcatactttatgcgccttaaaccgcg
ccccaggaccaattttacaattttaccaaTTTCGCTTCGGTCGTATTACA
CATTaattctttaagtttcttttcattCTAGCAAGTGCcaaatttgtctt
tttttatttagtgatttacagttgggtatcttggcagtcgattttcaaaa
aaaatttagtcgaccccaaccatggtggggcctgtttatcccttttccat
tcatcaaagatatatctacttttatccactaaatattcattatgcctagg
caaatgaattagtaaaagttttgaaactggtgggtggggtgccactttgg
aaaattgggggggggggcgccatttcaaagaaattgactttggcccctcc
agaaaaatttccccacaacgccactgcttTGTattgatataaaatggaat
ggcccaatggaCGGGGAATTACCCAGGTATCGCGTTCTTTGTCTGATTTT
AATGGGTTCTTTGCCGTACAAACTTTTCGGTTCCATGTTCTGCACCCGTT
ACTATTCACTGGATCACGTCACATATGGAATTTGATAgttttcagtcaaa
aaaaattcctaTTTCAGGACAAAAACGAAGCCCACTGtccaaataacatt
ttcaaaacaagacTTTAAAGAAAGCGGAGtgcaaaatatagaaaaatgtA
TAAAGAGGGTCTAAAAATTGAATGGTTTTAGTACATGATTGATATCATTT
GAATCAAGATGAAGATTGTTTTGCTTGCAACATTTTTGTGCGTCAATTTC
TTTGCCAAAACTTTTTCTCAAGAACAAGGTAAAGAGatttacaatcatgg
acaagAGGTTGTAGACTTTCCAAGgttgaaaaatttccaaaaaaactctG
AAAACCCATTGTTACCAGAAgccaatgttgtttttattggatgAGATATT
GGGTGACAAGTCCAGAAGCCAAATCCACTCAACATTGAAGGAAACATTAT
TGCAAAGTCTTCAGGTCGTTTTTTGTCTGAGATTGAAGGTTCAATGCGGA
GTTTTTcacttcaacttttttgagaagATATATAATTAAAACCATTTGAG
AAGGTTTAATCAATAATAAACAGCTTTTTAGAGCTCTCTGATGCAAACAA
CTAGCTGTGTGGTTaaacatttgaaacattttcagtcattttcagtacCC
TAGGAGGTATACaggtaccctacgagggacttattgatctattttggtgt
tttgtaGACCCTTCCTGGGACTGGTGGaattgaaaaaggtaccctgacca
acGTCACATTCCCGTACCCTCTTTATACCATAGTATCCCAATCcgggttt
ctcaattttaacgGTATTTAAAAAGGGTTAGGAGAAAAATCACTTTACAT
ATTTGTTTAAGGTTTTCCTTTCTTGTCAACTTTTATCATAATTCGATTCT
GTTAGATGTTTTGCCTGGCTAAGATGCAACCGTAGCTTTCCCCAAAAAAC
CTattgaaaaaaacgaaaagtAATGTAACATAGGAATGTAATAGAATTCC
TTATCTTTGGAGTTTCTAGAACGGTTAAATTCCATGCCCAACTgacacaa
aacgttgtttcgacgtttatctaatgttcacaacgtccatataacgttgg
atgaacgttgaaacaacgttttgtgtcAGCTAAGAGTAGATAAACGAgct
tataattaaaaaaaatactatcttggCCGCTTAGCTTAACAAAATTTTCG
CTTCCTGCTATTGTTCAATTGTAAAAAAGTTTGGGAGATAATGAAATGAT
tatctgtgacgtcatcataTCAAGCTCTGTTGAAAAAATATTATCCGCAT
CTTTACAGCTCTTGTTAAAAACTTCTTGAAAATACTCCAGGTCCATACTT
CGAAGGAGACATTATCCTCACACCCGATCAACAGGACGCCATTTTGGAAC
AGAAATCGAAAAACTCTTTCGCATCGGTGAGAACGGGCCTTTGGTTGGAC
AAtggaaaagttcaaaaaattatCGAATACGGGATAGACTCTAAACTAGG
TAagcctttttcaaattattttcattttcttaatgcttgaatcattattc
tttttggcccagcgcgcagcgcaatgggcctttaaaacacaactggtcga
aaaaatttgaaaatatggtcaaatctttctttcttaattAGTAGAAAAAA
GCTTAAAGTAATTCTAAAACTTTATTGCTCGCCCAACTCGAGtctataca
ttgaaaaaattcgcTCCTGTTGTATGGCGATTCTGCAGCGGAAAAATATG
CTGACAGTGCCAACACTGATGGGCCTTTACgccgcttaggctttcttgtt
ttAGAATATAGAGAGAAGGGGGGGGAAAGTTATTTAATCTTTTTATGCTT
TCTTTTattgctgtgtaagcaaatggaaGGAGGTACGTTAAATATGACAA
TGACTTTTGGTACGAGCTTTTCTGGTCaaaggaaattttaaaatatctaa
aaattcaTCTTGTCAAGGACAGTTATTCCCTCGTTTTATGCTTTCTTTTa
ctgctgtgtaagcaaatggaaGGAGGTACGTTAAATATGACTATGACTTT
TGGTACGAACTTTTCTGGCCaaaggaaattttaaaatatctaaaaattca
TCTTGTCAAGAAATTTGTCTTGTACCTTAGGTGGATTAAGTTTTGCGTAA
ACTTTTTTTCGCAAAtcgaaaatctaaaaatttcacGTGAACAGAAATTC
GTGAATCAGCCTTACCTCTTATCTTTTTCACccgatttctttcattttcc
taggggtttggGGTTTTCGGATTTCAAAGTAGCGAGGACTGAATTTTACG
AAAACGgtcaaaattcgcaaaaattaatccacacAAAAAATTTTTCCCAA
TCAAGAATTGGTAACAAAACGCATAATaatgatatttttcaatgaatcaA
TTCTTTCCGTTCTTTTTTTACGTATAGCCCGCTCCCCGATGGCCGTGCGT
GTGATCCGTGAGGCCGTTGaagaatatgaaaaattcacgtGTTTACGTTT
CAAAGAAGTGAGCGGACGTCCGAAAACTAAATATCACATGTATTTCTTCA
TCGGACGGGGGTAAGAaacatcaaagttttcaaaatatcaattttcttAT
CTgcccttaagggaagaaatttccgCAGTTGTTGTGTCAAATCCacgaaa
cacgaatattctcaggatttaaaaaatcaactctaaaattgttcttttta
gggcaaaataggccaaattgtaaacaaaaaaaatttgtcaaccACGAAAT
CGAATTTCGCGAAACTTGTGAATTTTGAActgtgaaccgcgaaattaaat
tccgcgaataTTTCTTCCCGTGAAAACTTCTTCCCTTAATGATGGACCGA
GATTTCAGCTGAAACTCGTCTGATTCACAGACCGTGATACTTcttaaaga
aactttttcgttaGATGATGAGCACGCTGAAGCTGGAAACCTCAAAGAAT
GTCAAATATTTCTTAAAGATCTTTTAAACTAAGCTTAAAAACCTTCTTCC
TTCCTAGAAAAGGACCGACACTTTTTAAGAACGCaaagaaaaaaagtatt
taCTGGCAAACTGCAAACTTTTATCTCCATATTATAACTTTTTTGACAGT
TGTTTTTCGAACGTTGGACGTTTGGAGGGCGGCAACCGAATCAGTTTAAG
TGCAAATGGTTGTTGGACTAAAGGAATTGCTATCCATGAAATGGGTCATA
GCTTAGGTAACCAACTCTTTTTTCTCTGTTTCTAAATTTTGCTCTTTCAC
TCCCTAGAAATATACCCGCTTTTTTAAAGAAcgactttataagaacacga
agCTGAAAAAAGACCGAAACCTAAGAACAGATTTTAAACCCACTTTAAGT
TTTTAACTAAGCGTATTgagaacatcataagaacatttaagcctgaaaaa
atattcagcatggtCTGACTTGTAGATTCCTTCCAAGGTGGTGTAAAAga
ctttcaaatctttttcgTCTATCTCTAGaaaacaatacaccttttcgacc
gtagccgccaattgccgtgcgggcatttttttgtccgctttatcccacta
aaaccgtcccagtccttttttcgcacctatagacaatagagaAGTATGTg
tcaaaaaggattggatcgagtttagggggataatttaataattaagtggc
acgctcctgaccgcgcgactacggtcgaaaaggggTATAGAATTTTGACG
TAAGGATTGTGGTAAGAgcccatttttttaaattttaagatttcattttg
ttttgctcaATACCATGAAAAGGAATCTACAGGAAATATATCTCAAACTA
TCTGATAACCCCTTTAATACTCCAAAAACACTAAGTCAGCCGGTAAAACA
CATCAAAACATTTAACGTCCAAACTTAGGTTGGTCAGTTGACTCTTACGT
GTTTCCCGATAACAGTTTTAGAttatttcccaaaaatcaataacaaaatt
aattttttaggcTTCTTCCACGAGCAATCAAGAGTAGATCGTGACAATTA
CGTTGACATCAAATGGGAAAATATGTTTGGTAAGTGTTAGTCCGAGTTAT
CCCAAGTGATTATTTCGAGTTGTTAAGAAAATTACTTGATTCATGTTATT
GAGTCAAATATGTCATGAAAACTCTTAAGTTTGCTTTAAATATTGAGCTA
tcttttgtttataaaattttgaattatttgagTCGATTTAAATCTGGATT
GTATTgctttcagcaaaagtacgactGAAAAGGCGCGAACTTTCGTTCAG
CTCTTGTATTCAGCTCAGAGTAGAAGCTATccgggagggggtactagggc
tgCGAGCTTTTGACCCTCGGACCGTTAGCAGGActaaaaaggaaataaaa
taGGAAAATGTTgcgatttttacgacccttattgggactaatttgaccaa
aatttgatCTTTCATAGAGCAAAAAGTTGaacttttcctatttttccgac
ccttagttggactgaaatttaattttctagatttttcaaaccctaCAGGG
ACTTtcatgtcccaaaaaagggacccttaagggtggcacatacccgtacc
cttcacttgcGTAAGTAAGCTATCTCCCTATTTTCATATCATCCTCAAAG
AGCATAATATGGAAAGCGTTAACCCTCTCCCATTATCATAAAATTAACTT
TGTCGCAAAATAAGCTTTTGCAACAGTAAAAAAAACTTGGCAAAAAGAAA
CATCCAAGCATGTACACTTTAGTCTTAAAACTCTTCTGTTTTAGATGGAG
CAAAGAGGAATTTCGATAAATACTCAACAGAAAAATTGTATGACTTCGAA
ACAAAATATGATTATGAAAGTATTATGCATTATCCAgaaaacggtaattt
tttattcaatcaaactgtatgtatttgtttttttacCCAGCTGACAATCA
ACGTTGTTTCagcattcatctaacgttttatgaacgttgtgaacattaga
taaacgttgtgtgccagctgggtacccAACCATTTTTCTAGGGCACGGCC
AAGGGTAAGCAAACATCTCTATCTTCGGATCAGCTACCGAAAGGGAGCGC
TTATAGTTCAGTATCTATCAATCTGTGGTACAGCACTAACTAAATAAAGG
GCGCTTTAAAAACGCCCAATTTAGTCAGCCCaagcaaattttgaaattct
cttCTAAGCAGGCTAAATATCCTCACATCAATGCATGCAATGGCTTCCTG
AATTCTCAAAAACCAATCAACTAtttactgacctttataaacaaAGCTaa
atccgccatcttgaaacatagttaattttaaaattgatacCCGCTAAGAA
ACcattaaaaattaacgtcaGACGGGGCTAAATCATCCAAAATTAGACAA
AAAGTAGACACAGTGCTCTTGATGCATtcacaccgctattgagtagtgca
tTAAGATACCACTGATAAAAAACTCCTTCCAAACAATATTGTGGTTAACG
GGAATTGAGAAACTTTCCCTTAAGTATATAAAGCTCAGTGATTTTATTAT
ATACCCATTCTTTTCAGCTTTTGCAAAACCTGGAAAGATCACAATCGTGG
CCAGAGatccaaaatatcaaaaagtgatTGGCCAAAGAGGTGGATTGAGT
CGTATTGATAAAATTCAGCTCAATCGAATGTATTGTAATGACAATTATAC
CACCCCAAAACCCTGGACCGTAGGTAAGAGGACTCGAAAGAGGCTTATTT
TTTCTGGGACACAGAATCTCCCTAGTTCATGATATTTATTACGTAATGTT
TCTATGGAAACAACCCGGTTTTTGCCAAAGTcgtaaattttaaacaattt
ttctcAAGGTTAAAGTTTCCACTACAGGTGAAAACCGGgttttccgtaga
aaacattacgtcatgaaatcACGTCCTTTTGCTTTTAAAACAAGATACCA
AGGCCGAAGAGGGTCGGTACATGACTCTGGTTAGAGAATTGGCTCACCCC
CGATTGTTTTTAAAAGCAGGGTGGGATTTCTGGAACTCTATTGAGGTCTT
GGTAAGGTAAGGGATTTtgcgaattttgtctaaatttgccgaattcgcca
aaataagttcccttaaggtatgtaGAGATTAGAGGCTAAGCATCGACTTC
ATTCTAACTACAATCATGACCAAAatatatttagatttttgggtatttct
aacttttcagaatttttgggcGAGAACGGCCAATTTCtatttccatttta
ttttatgagatatttcgatttggggacatttttcagtttctggatcctga
gatcctaaggtcgtaaaCCGTAAGTCAGTTGGAGTTCTGCACTCCAGAAG
TAAGTTAGAGCACTTAGAAATCATGTGTGATTTTTAAGACAGTTgtcaaa
gcagttttttctgtgagacggaaaattTCATGATAGAGATATTTTGGTAT
ACAGTGGCACCCACAGGCCACCATGGTTGGAGCCAAGGGCcagaaaaatt
tcagattttctaCCCCCTAGATTGGCTAGAAAGGCACTAAAACTTTTTAA
TCAAAACAAttcagaatgttcttaaaattcatacagcgaaaatatatata
tctaaaataggttgaaaaataaaaacataatgaACGTCATACTATGTATA
TACAAGGCCATCAGCCATAAACACAGTTTTAATACGAGATTTCTTTCTGA
TGGAATTATTAATTCTAGAGAataaaataaccatttttaactgagacgga
aaactttgacaaaattttctgtgagacggaaatccgtctgagacggaaga
attTTGACCGTAGATTTTTTATgcttaaaagattttttcccaACCCAACT
TTTTCAGCACCGAAAGATTGCAAAGATAAAGACAAAGAAACATGTCGTAG
ATTACGTAATGTTTGTAAAGCCGACGCCGTCAAGAAGATTTGTCCCGTCA
CATGTCGTGTCTGTTAAAAGAaacactttttgagttttaactaTACAGAA
CCTCGTGTAAAATAAACTTTAATCATACACaatattttttagttgtttGT
TTGAATTTCTAGCGTTTCCCTGAAGAATTTACCTTTTCGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001628XLOC_001628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002961-exon-sc0000024-1491911889:662498..662603TCONS_00002961-exon-sc0000024-1491911889:662498..662603Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1510915933:662498..662603TCONS_00002961-exon-sc0000024-1510915933:662498..662603Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1575043694:662498..662603TCONS_00002961-exon-sc0000024-1575043694:662498..662603Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1491911889:675288..675446TCONS_00002961-exon-sc0000024-1491911889:675288..675446Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1510915933:675288..675446TCONS_00002961-exon-sc0000024-1510915933:675288..675446Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1575043694:675288..675446TCONS_00002961-exon-sc0000024-1575043694:675288..675446Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1491911889:676375..676507TCONS_00002961-exon-sc0000024-1491911889:676375..676507Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1510915933:676375..676507TCONS_00002961-exon-sc0000024-1510915933:676375..676507Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1575043694:676375..676507TCONS_00002961-exon-sc0000024-1575043694:676375..676507Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1491911889:677047..677153TCONS_00002961-exon-sc0000024-1491911889:677047..677153Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1510915933:677047..677153TCONS_00002961-exon-sc0000024-1510915933:677047..677153Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1575043694:677047..677153TCONS_00002961-exon-sc0000024-1575043694:677047..677153Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1491911889:677908..677976TCONS_00002961-exon-sc0000024-1491911889:677908..677976Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1510915933:677908..677976TCONS_00002961-exon-sc0000024-1510915933:677908..677976Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1575043694:677908..677976TCONS_00002961-exon-sc0000024-1575043694:677908..677976Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1491911889:678692..678790TCONS_00002961-exon-sc0000024-1491911889:678692..678790Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1510915933:678692..678790TCONS_00002961-exon-sc0000024-1510915933:678692..678790Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1575043694:678692..678790TCONS_00002961-exon-sc0000024-1575043694:678692..678790Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1491911889:679465..679620TCONS_00002961-exon-sc0000024-1491911889:679465..679620Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1510915933:679465..679620TCONS_00002961-exon-sc0000024-1510915933:679465..679620Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1575043694:679465..679620TCONS_00002961-exon-sc0000024-1575043694:679465..679620Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1491911889:680755..680989TCONS_00002961-exon-sc0000024-1491911889:680755..680989Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1510915933:680755..680989TCONS_00002961-exon-sc0000024-1510915933:680755..680989Clytia hemisphaericaexon
TCONS_00002961-exon-sc0000024-1575043694:680755..680989TCONS_00002961-exon-sc0000024-1575043694:680755..680989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:662498..680989 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124483	0.0809272	0.187929	0.183859	0.111915	0	0.0533476	0	1.29376	0.346494	1.05099	0.11054	5.03431	5.5977	0.208378	5.21876e-06	0.733965	2.27456	164.973	173.89	23.4565	20.9298	89.9922	94.3528	0	5.06228	0.605421	1.71545	30.8955	55.3183
Blast
[Close]
BLAST of TCONS_00002961 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.920e-34
Identity = 89/233 (38.20%), Postives = 120/233 (51.50%), Query Frame = 1 
Query:  115 FEGDIILTPDQQDAILEQKSKNSFASVRTGLWLDNGKVQKIIEYGIDSKLARSPMAVRVIREAVEEYEKFTCLRFKEVSGRPKTKYHMYFFIGRGCFSNVGRLEGGNRISLSANGCWTKGIAIHEMGHSLGFFHEQSRVDRDNYVDIKWENMFDGAKRNFDKYSTEKLYDFETKYDYESIMHYPENAFAKPGKI-TIVARDPKYQKVIGQRGGLSRIDKIQLNRMY-CNDNYT 807
            F+GDI+L          QKS+N       GL   N +    I Y +   L  +  A   I  A E +   +C+ FK   G      ++ F    GC+S VG    G  IS+   GC  K I  HE+ H+LGF+HEQSR DRD+YV+I W+ +  G + NFD Y    + D  T YDYES+MHY   +F K   + TI A+ P++  +IGQR   S ID  +LNRMY C   +T
Sbjct:   55 FQGDILL----------QKSRN-------GLRDPNTRWTFPIPYILADNLGLN--AKGAILYAFEMFRLKSCVDFKPYEGESS---YIIFQQFDGCWSEVGDQHVGQNISI-GQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMYNCTTTHT 264
The following BLAST results are available for this feature:
BLAST of TCONS_00002961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A2.920e-3438.20Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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