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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002959 ID=TCONS_00002959|Name=TCONS_00002959|organism=Clytia hemisphaerica|type=transcript|length=1704bp
ATCTATATTTAAATCAATATATCGTCAAAAACTGATAAACCAGCTTCGTG
TTAATAGCGGTTGACATTACTAATCAATTTCGATCAATCAAGACTCATAT
ATTCGTTAAATTCCGAATCATCGATGcgttaagaaaatattttccatccA
TAGTATTAATGTTAGAAGTTTTAGGGTTCGACATCACAGAAAAGACAGTA
AGAAATGCCAAATTAATGACTGTCACAAAGCTTGCAATTTGTCGTATTGT
CATTGGGAAACCGAATGATTTTTGACCAAGATTATATGATGCTAATAGGT
CAGTAAAATCATTCCAATTGGGTCTCTCGTCATTATCTTTGCTAAGTTTA
CCAGCCGTTTTTATGAGATTGATGTGCGGTAAGATTTTGCCGAGTACTGA
CGAAATACGTTGGACACAAATCATCATTCGTAAAGCAATAAGCAAAAATA
AACATGTTCTAAACATTGTCCAATAGGAAATCGATTCATTTCTCCTAATA
TATAATCCAACATGTGTGAAAAGATCTGCTACACCAAAGAAAGCTAATAC
GACGTTAAAAGGAACAAAAAGTGAAGATAATGCTTCAGCTTCTGCGATGA
AGACGGAAAACAACTCACATGCTTCCGATGGCGTTAACTTGCAGAAGATT
CCTTGTTCCCGATCATCGTCATCAGCGTCTTCGTTGCCATTACCATCTCT
ACCAAAAGGACTATGCAGTTGTCGTGTCGGTAATATTGATTGAGGTCGTG
ATGATGTATTTTTACCACGTTTCACTTCTGCACAATTTGTATAAACTCGT
TCatcaaaaaatgaattgaacAGATCTAACGTAATGAAATTCGCCAAAGc
tgagaaaaaattgaaacagcAATTTCTGCGCAAGGCTGCAAAACTGGCAA
CAGGATAAATTTGAAGGTACGAAGTTTTACCAAACAAACTCATAAGGTGT
ACCGAATCTTTGACAATCAACCGAGATACGAAGATGAATTGATATGCAAT
AAAGCCAACAATGTAGACAGTAATACACCAATTAGATATATACATTAACA
ACCACAAGAGATATGACTGATCACCAAATACTATAACTTCCCCAACAact
gaatttttctttctcataaaaaagacaacaaaaaaTGACCATTGTAATAT
CTCCAGTAGGAACGGAAATATAACACTTTTAATGGCAACAGATTTCAACC
AATCACGATTGTGTCCTGGAGCATGTGGATCACCATCAATGAAACTATTT
CGAACGTAAAAACGGACTGCAACTGAATTTGTAATATTCCGACTCAACAT
TCTGGAGTACGCACTTGATCCAAAGATATATGCACCAATAGGGATACAGA
GCAACGGGATAATATACAATGAAAACTGCACCCACATATCAATGAAGCTC
CGGTGAAATACACCAAGAGCAAAGACTAATCCAATACTACCAAGGAGCAA
taaaaacataacttttgataagcAAACCATAAAGAAAGATGGTGATAAAT
AGGATTGTCCAAAGAAATATTGTATGAATAAAACAGGTCTCAATATATCT
TTGAATTGCTCTCGACGTTGGTAAGTGACGCCTGGTCTGTGAAATACATC
ATCGTCAGCTGTAGAATATTTGTGATCTTTGGAGAGAGGTTCGTAATGGT
GTTGATAATGATGACCCatcttttttgtgttttgtgttTTAAGATATATC
TAAA Run BLAST on NCBI transcript from alignment at sc0000024:633106..635976+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002959 ID=TCONS_00002959|Name=TCONS_00002959|organism=Clytia hemisphaerica|type=transcript|length=2871bp|location=Sequence derived from alignment at sc0000024:633106..635976+ (Clytia hemisphaerica)
ATCTATATTTAAATCAATATATCGTCAAAAACTGATAAACCAGCTTCGTG
TTAATAGCGGTTGACATTACTAATCAATTTCGATCAATCAAGACTCATAT
ATTCGTTAAATTCCGAATCATCGATGcgttaagaaaatattttccatccA
TAGTATTAATGTTAGAAGTTTTAGGGTTCGACATCACAGAAAAAACAGTA
AGAAATGACGCGAAATTTCGACCTATTTGCccgaaatttatcatttttta
caagatttttgtATTAGgttgtttgaaatgaaaaaaatgaatagttacaa
acttttcaatgttgaaaaataactattctacaTTGTTCAACTTgaaatta
tagtccttggctaatacttcatatattattcagaaaatgaagtgaaaatc
gctaccttttgcccatgtcggcaaTTGTCAAcattggcaaataggtcgaa
ccttctttttttccgtggcaaatagagttagttcatgtaatgtttccagc
tcacccaaatacagactaatacgcatgcgtaatttgccgTTCTTTTCAAC
CACATGCAGTTAATTTCCGTGACAATCAAAGAGGGATGAATCtctagggg
tggtacagtcactttcggtcggggttatggacggcgaaatatgaaatttg
tcgttctttaaaaatttgtcgttcaatttgtcgctttttaatagctattt
gtcgttctttttagatgatctggaaacgttagatgaacagtctcaatagg
tcgaaccttaaaaagCACGAggggcagttaaagggttaagtaCAATCTTT
GATTACTGGAAATAAGAAATAGTTTTTCCTAGAAACCCATGTTACTTAAA
TTAGCAGTTGTGTTTAATCTATATATtatcaatacacgttttttttaaga
aacacacttttaagaaacatgtggctcaaaatgcctaaaaactaagaagc
atctaagaaacatgctgaggctgagaataagaaaataacattttttaatt
cggttttttaagaacctttcaatcaaaacaaatgtattttttctttgcat
gaaagtaaAATTATATAGGCTGATtatatgtcaaaaagtttagaaacatg
taagaaacatttaaggctcaaaaggccgatttcttaagaaacattgaggc
tgcttggtaaaactagtttcttaaaaaacgcGTATATCGTCAAAAAACTT
ATAAAACCAGATTCGTGTTAATAGCGGTTGACATTACTAATCAATTTCGA
TCAATCAAGAATCATATATTCGTTAAATTCCGAATCATCGATgcattaag
aaaatattttccatccATAGTATTAATGTTAGAAGTTTTAGGGTTTGACA
TCACAGAAAAGACAGTAAGAAATGCCAAATTAATGACTGTCACAAAGCTT
GCAATTTGTCGTATTGTCATTGGGAAACCGAATGATTTTTGACCAAGATT
ATATGATGCTAATAGGTCAGTAAAATCATTCCAATTGGGTCTCTCGTCAT
TATCTTTGCTAAGTTTACCAGCCGTTTTTATGAGATTGATGTGCGGTAAG
ATTTTGCCGAGTACTGACGAAATACGTTGGACACAAATCATCATTCGTAA
AGCAATAAGCAAAAATAAACATGTTCTAAACATTGTCCAATAGGAAATCG
ATTCATTTCTCCTAATATATAATCCAACATGTGTGAAAAGATCTGCTACA
CCAAAGAAAGCTAATACGACGTTAAAAGGAACAAAAAGTGAAGATAATGC
TTCAGCTTCTGCGATGAAGACGGAAAACAACTCACATGCTTCCGATGGCG
TTAACTTGCAGAAGATTCCTTGTTCCCGATCATCGTCATCAGCGTCTTCG
TTGCCATTACCATCTCTACCAAAAGGACTATGCAGTTGTCGTGTCGGTAA
TATTGATTGAGGTCGTGATGATGTATTTTTACCACGTTTCACTTCTGCAC
AATTTGTATAAACTCGTTCatcaaaaaatgaattgaacAGATCTAACGTA
ATGAAATTCGCCAAAGctgagaaaaaattgaaacagcAATTTCTGCGCAA
GGCTGCAAAACTGGCAACAGGATAAATTTGAAGGTACGAAGTTTTACCAA
ACAAACTCATAAGGTGTACCGAATCTTTGACAATCAACCGAGATACGAAG
ATGAATTGATATGCAATAAAGCCAACAATGTAGACAGTAATACACCAATT
AGATATATACATTAACAACCACAAGAGATATGACTGATCACCAAATACTA
TAACTTCCCCAACAactgaatttttctttctcataaaaaagacaacaaaa
aaTGACCATTGTAATATCTCCAGTAGGAACGGAAATATAACACTTTTAAT
GGCAACAGATTTCAACCAATCACGATTGTGTCCTGGAGCATGTGGATCAC
CATCAATGAAACTATTTCGAACGTAAAAACGGACTGCAACTGAATTTGTA
ATATTCCGACTCAACATTCTGGAGTACGCACTTGATCCAAAGATATATGC
ACCAATAGGGATACAGAGCAACGGGATAATATACAATGAAAACTGCACCC
ACATATCAATGAAGCTCCGGTGAAATACACCAAGAGCAAAGACTAATCCA
ATACTACCAAGGAGCAAtaaaaacataacttttgataagcAAACCATAAA
GAAAGATGGTGATAAATAGGATTGTCCAAAGAAATATTGTATGAATAAAA
CAGGTCTCAATATATCTTTGAATTGCTCTCGACGTTGGTAAGTGACGCCT
GGTCTGTGAAATACATCATCGTCAGCTGTAGAATATTTGTGATCTTTGGA
GAGAGGTTCGTAATGGTGTTGATAATGATGACCCatcttttttgtgtttt
gtgttTTAAGATATATCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002959-exon-sc0000024-1491911889:633106..633287 | TCONS_00002959-exon-sc0000024-1491911889:633106..633287 | Clytia hemisphaerica | exon |
| TCONS_00002959-exon-sc0000024-1510915933:633106..633287 | TCONS_00002959-exon-sc0000024-1510915933:633106..633287 | Clytia hemisphaerica | exon |
| TCONS_00002959-exon-sc0000024-1575043694:633106..633287 | TCONS_00002959-exon-sc0000024-1575043694:633106..633287 | Clytia hemisphaerica | exon |
| TCONS_00002959-exon-sc0000024-1491911889:634455..635976 | TCONS_00002959-exon-sc0000024-1491911889:634455..635976 | Clytia hemisphaerica | exon |
| TCONS_00002959-exon-sc0000024-1510915933:634455..635976 | TCONS_00002959-exon-sc0000024-1510915933:634455..635976 | Clytia hemisphaerica | exon |
| TCONS_00002959-exon-sc0000024-1575043694:634455..635976 | TCONS_00002959-exon-sc0000024-1575043694:634455..635976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:633106..635976 + |
Blast
The following BLAST results are available for this feature:
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