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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002955 ID=TCONS_00002955|Name=TCONS_00002955|organism=Clytia hemisphaerica|type=transcript|length=385bp
CTGAGAAAGCGAAAACACAAACGAAAGCGAAACCATCAAAGAATAAGAAA
CCGCAAGAAAAAGACGctaataaaacaaacaaaaggaAAGTAAAACTGAC
GAAGAAATGCGACGAAACCGACATTTCCGTCAGTTGGCCTTTAAATATGA
TGGATGGAAAAACTTCATTACAAGAAGAAGGACATGTTCACATTTTTCCT
GAATCTTCAAACACCAAAGATTCAGTGACAAACATGGTGATGAAGGTTTG
TTCTTGTGGGTTGAAAATGCCTAAAGATGCTGTCGAAGAAATGTGAATTA
ATGCCAAATGTTTTGTTATTTAAGAACTTGATAGTGAATCTTCTTAAACA
TTTCCAATGGACCATAATGGAcacaaacgtctttt Run BLAST on NCBI transcript from alignment at sc0000024:477427..481090+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002955 ID=TCONS_00002955|Name=TCONS_00002955|organism=Clytia hemisphaerica|type=transcript|length=3664bp|location=Sequence derived from alignment at sc0000024:477427..481090+ (Clytia hemisphaerica)
CTGAGAAAGCGAAAACACAAACGAAAGCGAAACCATCAAAGAATAAGAAA
CCGCAAGAAAAAGACGctaataaaacaaacaaaaggaAAGTAAAACTGAC
GAAGAAATGCGACGAAACCGACATTTCCGTCAGTTGGCCTTTAAATATGA
TGGGTAAGTTGGGAATTTCCCTATAAACTGTTTATCTAATCACACAACAG
ACCTTAAAGGGTAATCTGAATTTTGATTGTCAATGGGAAATTCCCAAATG
ACATTTCTCTCAAACCACAAGTAAATATTATGCAAGTTGAAGTAGGTCCT
GAGAAAATTGTTGGTTGAGTTGAAAAGGGTATTTGCCGTCATTGGCACGC
GGCCGCCCACTCACAAGAATGGGTACCGCGCGGAATCGCTATCAAGAGAT
TTCGAGTACATAATGTTTGGACACGTGAGCTGTAGACCTCGTAGGTAGAC
GCTCCACTtcataaaaagtgaaaaatatgatttttcgtGAGAAATTGACT
TTATGCGAGCCTTTGTCAANtataaaaagtgaaaatatgatttttcgtGA
GAAAGTAAACGAATTGCTGGCTAAATTAGAATTAGGCATTAATACAAGAA
TCGGCTTATAAATTCTTAATAAATGTTACAGTATGTGACCCCAAAAACGT
CTATCCAAATTGATATCTTTCTAGTGAATTCAGAAAATAGGGAAcgttaa
aaatttttcttgtgAATTAAGCTTCAGCATGTCTAGTTTCTTTCCCAAAA
GATAATTTTCTAAGAATAAAGGTTTTTGTTAGAttatttttcagtcaaag
tcgagtcacttttttctaatggcccccaaaatggaggtttagtttttttg
aaatatcttaaTCAAAAAGCATAGCACCGACATCAAATTACTATCAATAG
GTATGGAGGCAACGCTTTACgacttaaaaaagtcaaaatttacttttctc
tttatcttcatacaaatggttgtcaaaacggaggttAGTGGTCCCATAAA
CGTcgcaaaaaaattcataccAAAACAATAAGTGTTTCAGGCCAGGCCTA
GTGCAAAATCCCGTGCAAAATACTAGCAGTCTCTAATGTTAAATTTACCG
TGAAATATTtcgaattttctgaaaaaccTTTAATTACTGAGTTGGTATGT
TGGTAAATGTGGTATATGTTTATACTTTCCAGAGTTGCCCAGTTTTTAGG
GGTTAACTTCCAATCTTGTTTGACTTTTGACGGTTTTagtccaaaaaaag
aaaattttgaaactaatttttgaaaaaaaaggaagaagaaaattagccat
gttaaaaatgacattttggtatttttcttttttcgtaCTCCAGAGAAATA
TGTTAGGATTGAATCTCAAGCTTTCCCAGGTTTTAAGGTGGTCATCGACC
CTAAAAGGCTCTTTTATTAAAAACACTATTCTGTAAAgttattgaaacat
tttttggtATAAATTGATACTATATAACAATTGCGCCCTGTTGCTAGGGG
CTACAGCCCCGGCAACCTGAAAAAATGGAAACTTTGCaacattttttctc
aagataGCTTTAGAGTTAGAAGTTGAAACTTGGCAGGATTGTTCGTTGGA
TGAAACTCtatgaaatgaatgaaaaaaaattttctgcatAACAACGGTTG
CTATGGTAACTGGAAAATCATGTTTTCCTTAGTTACCATAGCAACGGATG
ctaagggaaaattttttttccaaagctatcttgagaaaaaatgtcGCAAC
CGCCAATATTCACCAACTTCAACATTTTGAGAAAACATACGGTAAAGTTA
GAAATCACTGTAAATAGCTTTATACGTAGTTTCTTTTGCTGATTTTAGTT
AATTCACAGATACTTTAAATCATTTCAATAGAATAATTGGTTAAACTGAC
TCAACTAGGacattttggtcgatttaagcAATCTGAGGTGCATCCTCAAA
ATAGCCTGCAGTGGCGCAAAAATTGCTGCAAAACAGTTTAAAAGGGTACA
AGGAGCAAAAATTTGTGCTTTGTTCACTTCAATAATGATTTGAATCTATC
CAAGAGAAAAAGACCAAAAAGTCAACTGTATTTGTCCAAATGCTGCCTTG
AAATTCCCAGTGTTTTGTGTAAGCTACGTCCGCATATAATTttgtacttt
cactttcacttttaagCAGTTTCCGAAATGAACCGAAATGATCCAAAATC
ATAGCAAATCATCTTTATCCAACTTCAAATACATATGCAAACATATCTTA
TACAGTGTCGTAGGAAGCAtttccatattgggggggggctgaagtttagt
gacaccgcgagggccaaccatggtttggcccgaggggagaaattttgaaa
ttttgagctctagattgcttgaaaatgcactaaACTGttacaattatgac
aaattaaaaaagaaaaactttgcattttgcaaaataaccatttttgaaaa
aattattggggggcatagccccccccttgccccccagtTGCTATGGCACT
GTTATACATGCTTACTCACTATGAATGGTTGTTTAAAAGAATCTCATAAG
AATAATGgtaatgaaaatacaaaaaacaaagaaaattatctACGTACCTT
GTGCTTATCTTTGGAGGTTATTGTAAACTCAATTCAGAATAAATCTCATA
TAATATTGAGAAGCATGGTTCCTTGGAGTATTAAAGACCTCTTTTAATTa
taaatgagctttaaaatgCCACTCAAAACAGCAAATAAACACATAGAAAC
ACATGAAGCACAGAGGTTACTCTCAGTCAACCCACCTCTCAAATGATTTC
AAGGGCGGTGAATATTTACAATGTTTATAACTCGATCGCGGTACGCGTAA
GCGACTTTTGAACTTAGCATAAAGAATCTTTGCGACTTTAAGACGTcccg
taaaaaaattcaagcagCTTGAAGCGCTAGAAGCAGAATTATAGCTGTTT
TATCGCTGGGTGGAAATACGGGTACAAACGGGCGGAGACCAATTTCTGTC
TAGGTAAGTATCTTTATAACTAAAATTTTTAACCTTCCTCTTCTTTTTAT
GACCTGAAACTTTGGGAAGTTGTTGTGAATAGGTTATATTTGAGTTTTaa
cccaaaaatgaaaatttgaccaGAAAAAAGACATGATATTATATGGGTCG
ATGACCACCTTAAAGTACAAACATGGCTCATTAAGGCAAAActtccgttt
tgggggccgtctccgttttgggggccatatactgtaagcCTTTTAAAGTG
AAATCATTCTGACACAAAAAGGGACTGATGCTGATCGATTTTAATGATTA
TGAATAATCACCAAAGCTGATTACCATTGCACCACacccatcagtaaaat
caaaaaagtggtgcaagttgggtctgggtacgagattgctCTCCAAGAAC
AccttatatttttctttcttatttttacGCAGATGGAAAAACTTCATTAC
AAGAAGAAGGACATGTTCACATTTTTCCTGAATCTTCAAACACCAAAGAT
TCAGTGACAAACATGGTGATGAAGGTTTGTTCTTGTGGGTTGAAAATGCC
TAAAGATGCTGTCGAAGAAATGTGAATTAATGCCAAATGTTTTGTTATTT
AAGAACTTGATAGTGAATCTTCTTAAACATTTCCAATGGACCATAATGGA
cacaaacgtctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002955-exon-sc0000024-1491911889:477427..477579 | TCONS_00002955-exon-sc0000024-1491911889:477427..477579 | Clytia hemisphaerica | exon |
| TCONS_00002955-exon-sc0000024-1510915933:477427..477579 | TCONS_00002955-exon-sc0000024-1510915933:477427..477579 | Clytia hemisphaerica | exon |
| TCONS_00002955-exon-sc0000024-1575043694:477427..477579 | TCONS_00002955-exon-sc0000024-1575043694:477427..477579 | Clytia hemisphaerica | exon |
| TCONS_00002955-exon-sc0000024-1491911889:480859..481090 | TCONS_00002955-exon-sc0000024-1491911889:480859..481090 | Clytia hemisphaerica | exon |
| TCONS_00002955-exon-sc0000024-1510915933:480859..481090 | TCONS_00002955-exon-sc0000024-1510915933:480859..481090 | Clytia hemisphaerica | exon |
| TCONS_00002955-exon-sc0000024-1575043694:480859..481090 | TCONS_00002955-exon-sc0000024-1575043694:480859..481090 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:477427..481090 + |
Blast
The following BLAST results are available for this feature:
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