TCONS_00002944 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002944
Unique Name	TCONS_00002944
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2467

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000024:72036..76084+
coding sequence from alignment at sc0000024:72036..76084+

transcript sequence

>TCONS_00002944 ID=TCONS_00002944|Name=TCONS_00002944|organism=Clytia hemisphaerica|type=transcript|length=2467bp
CAGATGTCGCAGAAACAATAACATCAAAGAAGTTAGTGCATAGAACTTGG
ATAAAGTGAAAGATTTcttattaagtttttttttatattttgctcGCTTT
TCATTACGGAGCAGAAGCAAGCTTAATTAACCAAACTTTATGAATATATT
TTTCGAGCTGAAGCGCAAAAAATTAGTTGCACGCTAAAAGGTGACTTTTG
ACTAGACAAATCCAGCAACAGTTTTCAAAGACTTTATATCAAGATGTGGT
TACAGATTGCTTTCGCCGCTATCATTGTCTCGTTCACTGCATTCTATTTG
TACATGAAACATAAAATGTCTTACTGGAAGCGGCGAGGGATACCGGAAGA
TAAAGGATATTTCCCCTTCGGTAGCAAACATGCTTGGGATCTTTTACAAA
GGAAATTGCCGTTCATGCATATGACAAATTATGCATATGAGACACACCCT
GGTGAAAAGGTCGTTGGAACTTATGATATGTTTGGAAGCCCAGCTCTGGT
TATTCGTGATCCTGACATTGCTAAATTAATCTTGGTCaaagattttgata
atttcatGGACCGTAAACCATTTCATTTTAACATGTATGGTCCTAAAAGT
AAGAATAACAGATACATGCCATACATGTTGTTAGAGCTTCGTGGCCAGAA
ATGGAAGAATGTAAGATCGTCATTGACACCTATTTTCACTAGCGGCAAAC
TGAAGAATATGATTCCACTCATACATAAAGTTGCTGATAACTGTGAAACA
TACTTAGACAAAAATATTGGTGTTGAATTTGAGGCGAAGGAGTTGTTAAA
GGGATACGCTTTGGATGTAATCATTTCAACCGGATTTGGTTATGAGAACG
ACACTATAAATAATCcagaaaatatcttcaaaaagcATGCTGATGTGATT
AAAGGGAAAACGTTCAGTCTGAAATTGATCATTGCTATTCTTATGTTCAT
GGCGTGCCCCAGGCTTCTCCGGTGGTTGGATTTGTCcatattcaataaaa
actcgGAAGATTTCTTTGCAGCACTCATTGTTAAAACTATCAAGGAGCGC
AAAGAATGTGGACAGAGAAGAAACGATTTGATAGATGTCTGTGTTGATAT
TTTGGAGAAAGAACGAAAAGAGAATGAGAAAAGTGTAGAAGATGAAAAAG
AggcaaaaagaagaaattacGAAATGGAAAAAATAATCATCGCTAATTCA
TTGATCATGTTTCTTGCAGGATTTGATACAGTCTCAAGCACTTCATCACT
GATGATGTATTTCTTGGCAAAGCATCAAGATTGCCAAGAAAGACTCTACC
AAGAAGTTCAAGAAGCTATCGAATCCACCGGCTCCACAAACTTCGATTAC
GCTACCATTATGAATATGCCTTATAtggaaaaattcttccaagaaacCCT
AAGAAAGTATCCTTTTGTGCATTTAGAAAGGTGTTCCAAGGAGGAATATA
AGATCCCTGACACTGATATAGTGATCCCAAAAGGTATTTTTGTTCGATAT
GCGGCCACCGCTGTggtgaaagatgaaaaatatttccCCAATCCTGAAGT
GTTCGATCCTGAGAATTACAGTGCTGAAAAGAAAGTTGACAGACACCCGT
TTGTCTCTGGTGGCTTTGGACATGGACCGAGGAATTGTATTGCACAGCGA
TTCGCGACAATGGAAGTCAAAATTGTGATTGCACGGTTGTTGAGCAAATA
TAAGATTGCACCATGTTCGAAAACTGTGGATGAATTGATTCCAGATCCCA
GGTCAAGAAGTGGGCAACCGAAAGGGGATATTTGGGTTACTGTTGAGAAA
AGGTGAAAAAATCTTCATATAGGATGGcaataaaaaatcttttgcaAGGA
AAATATGATTAGAACATTACTGATTTTAAATGTGAAAACTTTAGAACAAA
TATAGAACAGCCTGAGCTGCAGACTAACAAATTTACTGATGTCGATtgag
ctattccagaaatagtctatatctcctatgttgaggaggtgtgacgtcca
ggatggtctggaaaataaaaaatccagggtagtcagaaaaatcgggttat
aaatccagggtggtccaaagaaacgagagaaaaaaatccagggggtcacc
ttttaaaaaaaatctcctcaacatagggggaaaatttttttctggaatag
cccatttttGTTGCATCTCAACATAAATTCAAAAAGGTCACAATACGGTA
Gactgtttctttttttattgtaaagctaaatgatcaaataaatcttttaa
tttttgaataaaattttagaaatattatttctttattgtaaataaattaa
aatcatggttattaattttcacaatttttgcgatttttggcatttttagc
ggaagttaatatttttcaaaattcttaacagggtaattcgaaaaaatcgt
gaaaaaaatctgaaaaagtctGATTATCTATCAAACTTcaaaatcgtaat
aaatatataaaattttc

Run BLAST on NCBI

protein sequence of TCONS_00002944-protein

>TCONS_00002944-protein ID=TCONS_00002944-protein|Name=TCONS_00002944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
MWLQIAFAAIIVSFTAFYLYMKHKMSYWKRRGIPEDKGYFPFGSKHAWDL
LQRKLPFMHMTNYAYETHPGEKVVGTYDMFGSPALVIRDPDIAKLILVKD
FDNFMDRKPFHFNMYGPKSKNNRYMPYMLLELRGQKWKNVRSSLTPIFTS
GKLKNMIPLIHKVADNCETYLDKNIGVEFEAKELLKGYALDVIISTGFGY
ENDTINNPENIFKKHADVIKGKTFSLKLIIAILMFMACPRLLRWLDLSIF
NKNSEDFFAALIVKTIKERKECGQRRNDLIDVCVDILEKERKENEKSVED
EKEAKRRNYEMEKIIIANSLIMFLAGFDTVSSTSSLMMYFLAKHQDCQER
LYQEVQEAIESTGSTNFDYATIMNMPYMEKFFQETLRKYPFVHLERCSKE
EYKIPDTDIVIPKGIFVRYAATAVVKDEKYFPNPEVFDPENYSAEKKVDR
HPFVSGGFGHGPRNCIAQRFATMEVKIVIARLLSKYKIAPCSKTVDELIP
DPRSRSGQPKGDIWVTVEKR

Run BLAST on NCBI

transcript from alignment at sc0000024:72036..76084+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002944 ID=TCONS_00002944|Name=TCONS_00002944|organism=Clytia hemisphaerica|type=transcript|length=4049bp|location=Sequence derived from alignment at sc0000024:72036..76084+ (Clytia hemisphaerica)
CAGATGTCGCAGAAACAATAACATCAAAGAAGTTAGTGCATAGAACTTGG
ATAAAGTGAAAGATTTcttattaagtttttttttatattttgctcGCTTT
TCATTACGGAGCAGAAGCAAGCTTAATTAACCAAACTTTATGAATATATT
TTTCGAGCTGAAGCGCAAAAAATTAGTTGCACGCTAAAAGGTGACTTTTG
ACTAGACAAATCCAGCAACAGTTTTCAAAGACTTTATATCAAGATGTGGT
TACAGATTGCTTTCGCCGCTATCATTGTCTCGTTCACTGCATTCTATNTC
TCAAAGACTTATTATCGAAATGTGGCTACAGATTGCTTTAGCTGCTATCA
TCGTCTCGTTCACTGCATTCTACTTGTACATGAAACATAAAATGTCTTAC
TGGAAGCGGCGAGGGATACCGGAAGATAAAGGATATTTCCCCTTCGGTAG
CAAACATGCTTGGGATCTTTTACAAAGGAAATTGCCGTTCATGCATATGA
CAAATTATGCATATGAGACACACCCTGGTGAAAAGGTCGTTGGAACTTAT
GATATGTTTGGAAGCCCAGCTCTGGTTATTCGTGATCCTGACATTGCTAA
ATTAATCTTGGTCaaagattttgataatttcatGGACCGTAAACCATTTC
ATTTTAACATGTATGGTCCTAAAAGTAAGAATAACAGATACATGCCATAC
ATGTTGTTAGAGCTTCGTGGCCAGAAATGGAAGAATGTAAGATCGTCATT
GACACCTATTTTCACTAGCGGCAAACTGAAGAATATGATTCCACTCATAC
ATAAAGTTGCTGATAACTGTGAAACATACTTAGACAAAAATATTGGTGTT
GAATTTGAGGCGAAGGAGTTGTTAAAGGGATACGCTTTGGATGTAATCAT
TTCAACCGGATTTGGTTATGAGAACGACACTATAAATAATCcagaaaata
tcttcaaaaagcATGCTGATGTGATTAAAGGGAAAACGTTCAGTCTGAAA
TTGATCATTGCTATTCTTATGTTCATGGCGTGCCCCAGGCTTCTCCGGTG
GTTGGATTTGTCcatattcaataaaaactcgGAAGATTTCTTTGCAGCAC
TCATTGTTAAAACTATCAAGGTGAGATTTTTCTTGGGTGATTGCTTcttt
atacccctgtctcgcagcctcactggaacttttttcctctcCTCGGTGGG
GATAGTAACATTCCTTTTGAATTTcggatggggatagaaattctattgtt
ccaagattaaaaaatccagtggggatggttttggagtacaatttttaaac
attgaatttcgaatggggatgaaatcaaaatcattttcccagtggggctg
aaattccattgtattttcccaccgaggacgaaatttttgctaaactttcc
agtggggctggggtcccagtggttctgtgacacaggggtatttTTTTGTA
GACAGTCTATTTTATTTTCAGCTATTATGGTATTTGACctaaaaataaat
atggaaGTGAGACTTTTAGATCCtgaatttctattttcaatACACCATCC
AGTGATTCGTTAAACGGTCGCGCATGTGCTCGTTGTTGCTCTCCGCCGGT
CTTGAGATGTAAACAAACCTGTTTACACCTGCATTTTAGggaagttgttt
tttttatttctgttgAACAGACGGGATGGTATTGGCTAAGCGGCTACTAG
CttcaaatgaaattattttgaattctcTTTCAGGAGCGCAAAGAATGTGG
ACAGAGAAGAAACGATTTGATAGATGTCTGTGTTGATATTTTGGAGAAAG
AACGAAAAGAGAATGAGAAAAGTGTAGAAGATGAAAAAGAggcaaaaaga
agaaattacGAAATGGAAAAAATAATCATCGCTAATTCATTGATCATGTT
TCTTGCAGGTGACCAGCGAATTATTTCACTAAGTTCTGCTAAATCTTTTA
TTAATCTATTTTGCTACCTTTAAAGGCCGGCCTCCACTTTCACGCGAAAT
GAGCGAAAACGCCGTATTCTTTTCTGTAGGTAAAAACGATTGATAAAAAG
ATTTCGATCATTTTCGCGTGAAAGTGGAGGCCCGCGAAATAAATCTCAAG
GTAGTTAGTATTTTTTCACATGAAAACACCTAATAGCATGAAGatttaat
ttcataatttttggaaattttaaaatcccgCTAAAGCGGAATAATCAGGG
ATCTTTCTGCaataaatttcctaaaattgtGGTTGAGAGTTGGTTGTAAC
AAGAGTACCCCAGATTAATTAACagggaaattttttcaatttggaAAGAT
AATGGTGTTGATATTGATACTCCATCCAGGAGGTACTATGAAGGGTATGT
GTGGATGGGACCTCAGaaaactgacccttagagagactaaatttttagtg
aaaaagttccccttagagagacttttttgaatgaGAAATTTTCTTCGACT
TTTGAAACATTTCTTTACCCTTAGAGTGACTTTTCTTGAggaattttctt
cgatttttgaaaattgtcttACCCTCAGAGAGacctttttacaatttttt
ctctcgaaatcaaaacaagttcttaaaaatcgtgaattttccgaccctta
gaggtaaaaaatttctgttttttttaacACCCTTAGAGAAACTTTTGGAG
CGAGGAAAAAACCGACCCTCATTGTCCGCACATATaaagcacccattttt
gcccgGGTACTGAATCAATTTAAAGCCAGTTAAAACTGTAAACCATAAAA
TCAAACCTTTTTGGTTATCGTTTAAAATAATTTCATCATTTCATTTAATA
GGATTTGATACAGTCTCAAGCACTTCATCACTGATGATGTATTTCTTGGC
AAAGCATCAAGATTGCCAAGAAAGACTCTACCAAGAAGTTCAAGAAGCTA
TCGAATCCACCGGCTCCACAAACTTCGATTACGCTACCATTATGAATATG
CCTTATAtggaaaaattcttccaagaaacCCTAAGAAAGTATCCTTTTGT
GCATTTAGAAAGGTGTTCCAAGGAGGAATATAAGATCCCTGACACTGATA
TAGTGATCCCAAAAGGTATTTTTGTTCGATATGCGGCCACCGCTGTggtg
aaagatgaaaaatatttccCCAATCCTGAAGTGTTCGATCCTGAGAATTA
CAGTGCTGAAAAGAAAGTTGACAGACACCCGTTTGTCTCTGGTGGCTTTG
GACATGGACCGAGGAATTGTATTGCACAGCGATTCGCGACAATGGAAGTC
AAAATTGTGATTGCACGGTTGTTGAGCAAATATAAGATTGCACCATGTTC
GAAAACTGTGGATGAATTGATTCCAGATCCCAGGTCAAGAAGTGGGCAAC
CGAAAGGGGATATTTGGGTTACTGTTGAGAAAAGGTGAAAAAATCTTCAT
ATAGGATGGcaataaaaaatcttttgcaAGGAAAATATGATTAGAACATT
ACTGATTTTAAATGTGAAAACTTTAGAACAAATATAGAACAGCCTGAGCT
GCAGACTAACAAATTTACTGATGTCGATtgagctattccagaaatagtct
atatctcctatgttgaggaggtgtgacgtccaggatggtctggaaaataa
aaaatccagggtagtcagaaaaatcgggttataaatccagggtggtccaa
agaaacgagagaaaaaaatccagggggtcaccttttaaaaaaaatctcct
caacatagggggaaaatttttttctggaatagcccatttttGTTGCATCT
CAACATAAATTCAAAAAGGTCACAATACGGTAGactgtttctttttttat
tgtaaagctaaatgatcaaataaatcttttaatttttgaataaaatttta
gaaatattatttctttattgtaaataaattaaaatcatggttattaattt
tcacaatttttgcgatttttggcatttttagcggaagttaatatttttca
aaattcttaacagggtaattcgaaaaaatcgtgaaaaaaatctgaaaaag
tctGATTATCTATCAAACTTcaaaatcgtaataaatatataaaattttc

Coding sequence (CDS) from alignment at sc0000024:72036..76084+

>TCONS_00002944 ID=TCONS_00002944|Name=TCONS_00002944|organism=Clytia hemisphaerica|type=CDS|length=6252bp|location=Sequence derived from alignment at sc0000024:72036..76084+ (Clytia hemisphaerica)
ATGTGGTTACAGATTGCTTTCGCCGCTATCATTGTCTCGTTCACTGCATT
CTATTTGTACATGAAACATAAAATGTCTTACTGGAAGCGGCGAGGGATAC
CGGAAGATAAAGGATATTTCCCCTTCGGTAGCAAACATGCTTGGGATCTT
TTACAAAGGAAATTGCCGTTCATGCATATGACAAATTATGCATATGAGAC
ACACCCTGGTGAAAAGGTCGTTGGAACTTATGATATGTTTGGAAGCCCAG
CTCTGGTTATTCGTGATCCTGACATTGCTAAATTAATCTTGGTCaaagat
tttgataatttcatGGACCGTAAACCATTTCATTTTAACATGTATGGTCC
TAAAAGTAAGAATAACAGATACATGCCATACATGTTGTTAGAGCTTCGTG
GCCAGAAATGGAAGAATGTAAGATCGTCATTGACACCTATTTTCACTAGC
GGCAAACTGAAGAATATGATTCCACTCATACATAAAGTTGCTGATAACTG
TGAAACATACTTAGACAAAAATATTGGTGTTGAATTTGAGGCGAAGGAGT
TGTTAAAGGGATACGCTTTGGATGTAATCATTTCAACCGGATTTGGTTAT
GAGAACGACACTATAAATAATCcagaaaatatcttcaaaaagcATGCTGA
TGTGATTAAAGGGAAAACGTTCAGTCTGAAATTGATCATTGCTATTCTTA
TGTTCATGGCGTGCCCCAGGCTTCTCCGGTGGTTGGATTTGTCcatattc
aataaaaactcgGAAGATTTCTTTGCAGCACTCATTGTTAAAACTATCAA
GGAGCGCAAAGAATGTGGACAGAGAAGAAACGATTTGATAGATGTCTGTG
TTGATATTTTGGAGAAAGAACGAAAAGAGAATGAGAAAAGTGTAGAAGAT
GAAAAAGAggcaaaaagaagaaattacGAAATGGAAAAAATAATCATCGC
TAATTCATTGATCATGTTTCTTGCAGGATTTGATACAGTCTCAAGCACTT
CATCACTGATGATGTATTTCTTGGCAAAGCATCAAGATTGCCAAGAAAGA
CTCTACCAAGAAGTTCAAGAAGCTATCGAATCCACCGGCTCCACAAACTT
CGATTACGCTACCATTATGAATATGCCTTATAtggaaaaattcttccaag
aaacCCTAAGAAAGTATCCTTTTGTGCATTTAGAAAGGTGTTCCAAGGAG
GAATATAAGATCCCTGACACTGATATAGTGATCCCAAAAGGTATTTTTGT
TCGATATGCGGCCACCGCTGTggtgaaagatgaaaaatatttccCCAATC
CTGAAGTGTTCGATCCTGAGAATTACAGTGCTGAAAAGAAAGTTGACAGA
CACCCGTTTGTCTCTGGTGGCTTTGGACATGGACCGAGGAATTGTATTGC
ACAGCGATTCGCGACAATGGAAGTCAAAATTGTGATTGCACGGTTGTTGA
GCAAATATAAGATTGCACCATGTTCGAAAACTGTGGATGAATTGATTCCA
GATCCCAGGTCAAGAAGTGGGCAACCGAAAGGGGATATTTGGGTTACTGT
TGAGAAAAGGTGAATGTGGTTACAGATTGCTTTCGCCGCTATCATTGTCT
CGTTCACTGCATTCTATTTGTACATGAAACATAAAATGTCTTACTGGAAG
CGGCGAGGGATACCGGAAGATAAAGGATATTTCCCCTTCGGTAGCAAACA
TGCTTGGGATCTTTTACAAAGGAAATTGCCGTTCATGCATATGACAAATT
ATGCATATGAGACACACCCTGGTGAAAAGGTCGTTGGAACTTATGATATG
TTTGGAAGCCCAGCTCTGGTTATTCGTGATCCTGACATTGCTAAATTAAT
CTTGGTCaaagattttgataatttcatGGACCGTAAACCATTTCATTTTA
ACATGTATGGTCCTAAAAGTAAGAATAACAGATACATGCCATACATGTTG
TTAGAGCTTCGTGGCCAGAAATGGAAGAATGTAAGATCGTCATTGACACC
TATTTTCACTAGCGGCAAACTGAAGAATATGATTCCACTCATACATAAAG
TTGCTGATAACTGTGAAACATACTTAGACAAAAATATTGGTGTTGAATTT
GAGGCGAAGGAGTTGTTAAAGGGATACGCTTTGGATGTAATCATTTCAAC
CGGATTTGGTTATGAGAACGACACTATAAATAATCcagaaaatatcttca
aaaagcATGCTGATGTGATTAAAGGGAAAACGTTCAGTCTGAAATTGATC
ATTGCTATTCTTATGTTCATGGCGTGCCCCAGGCTTCTCCGGTGGTTGGA
TTTGTCcatattcaataaaaactcgGAAGATTTCTTTGCAGCACTCATTG
TTAAAACTATCAAGGAGCGCAAAGAATGTGGACAGAGAAGAAACGATTTG
ATAGATGTCTGTGTTGATATTTTGGAGAAAGAACGAAAAGAGAATGAGAA
AAGTGTAGAAGATGAAAAAGAggcaaaaagaagaaattacGAAATGGAAA
AAATAATCATCGCTAATTCATTGATCATGTTTCTTGCAGGATTTGATACA
GTCTCAAGCACTTCATCACTGATGATGTATTTCTTGGCAAAGCATCAAGA
TTGCCAAGAAAGACTCTACCAAGAAGTTCAAGAAGCTATCGAATCCACCG
GCTCCACAAACTTCGATTACGCTACCATTATGAATATGCCTTATAtggaa
aaattcttccaagaaacCCTAAGAAAGTATCCTTTTGTGCATTTAGAAAG
GTGTTCCAAGGAGGAATATAAGATCCCTGACACTGATATAGTGATCCCAA
AAGGTATTTTTGTTCGATATGCGGCCACCGCTGTggtgaaagatgaaaaa
tatttccCCAATCCTGAAGTGTTCGATCCTGAGAATTACAGTGCTGAAAA
GAAAGTTGACAGACACCCGTTTGTCTCTGGTGGCTTTGGACATGGACCGA
GGAATTGTATTGCACAGCGATTCGCGACAATGGAAGTCAAAATTGTGATT
GCACGGTTGTTGAGCAAATATAAGATTGCACCATGTTCGAAAACTGTGGA
TGAATTGATTCCAGATCCCAGGTCAAGAAGTGGGCAACCGAAAGGGGATA
TTTGGGTTACTGTTGAGAAAAGGTGAATGTGGTTACAGATTGCTTTCGCC
GCTATCATTGTCTCGTTCACTGCATTCTATTTGTACATGAAACATAAAAT
GTCTTACTGGAAGCGGCGAGGGATACCGGAAGATAAAGGATATTTCCCCT
TCGGTAGCAAACATGCTTGGGATCTTTTACAAAGGAAATTGCCGTTCATG
CATATGACAAATTATGCATATGAGACACACCCTGGTGAAAAGGTCGTTGG
AACTTATGATATGTTTGGAAGCCCAGCTCTGGTTATTCGTGATCCTGACA
TTGCTAAATTAATCTTGGTCaaagattttgataatttcatGGACCGTAAA
CCATTTCATTTTAACATGTATGGTCCTAAAAGTAAGAATAACAGATACAT
GCCATACATGTTGTTAGAGCTTCGTGGCCAGAAATGGAAGAATGTAAGAT
CGTCATTGACACCTATTTTCACTAGCGGCAAACTGAAGAATATGATTCCA
CTCATACATAAAGTTGCTGATAACTGTGAAACATACTTAGACAAAAATAT
TGGTGTTGAATTTGAGGCGAAGGAGTTGTTAAAGGGATACGCTTTGGATG
TAATCATTTCAACCGGATTTGGTTATGAGAACGACACTATAAATAATCca
gaaaatatcttcaaaaagcATGCTGATGTGATTAAAGGGAAAACGTTCAG
TCTGAAATTGATCATTGCTATTCTTATGTTCATGGCGTGCCCCAGGCTTC
TCCGGTGGTTGGATTTGTCcatattcaataaaaactcgGAAGATTTCTTT
GCAGCACTCATTGTTAAAACTATCAAGGAGCGCAAAGAATGTGGACAGAG
AAGAAACGATTTGATAGATGTCTGTGTTGATATTTTGGAGAAAGAACGAA
AAGAGAATGAGAAAAGTGTAGAAGATGAAAAAGAggcaaaaagaagaaat
tacGAAATGGAAAAAATAATCATCGCTAATTCATTGATCATGTTTCTTGC
AGGATTTGATACAGTCTCAAGCACTTCATCACTGATGATGTATTTCTTGG
CAAAGCATCAAGATTGCCAAGAAAGACTCTACCAAGAAGTTCAAGAAGCT
ATCGAATCCACCGGCTCCACAAACTTCGATTACGCTACCATTATGAATAT
GCCTTATAtggaaaaattcttccaagaaacCCTAAGAAAGTATCCTTTTG
TGCATTTAGAAAGGTGTTCCAAGGAGGAATATAAGATCCCTGACACTGAT
ATAGTGATCCCAAAAGGTATTTTTGTTCGATATGCGGCCACCGCTGTggt
gaaagatgaaaaatatttccCCAATCCTGAAGTGTTCGATCCTGAGAATT
ACAGTGCTGAAAAGAAAGTTGACAGACACCCGTTTGTCTCTGGTGGCTTT
GGACATGGACCGAGGAATTGTATTGCACAGCGATTCGCGACAATGGAAGT
CAAAATTGTGATTGCACGGTTGTTGAGCAAATATAAGATTGCACCATGTT
CGAAAACTGTGGATGAATTGATTCCAGATCCCAGGTCAAGAAGTGGGCAA
CCGAAAGGGGATATTTGGGTTACTGTTGAGAAAAGGTGAATGTGGTTACA
GATTGCTTTCGCCGCTATCATTGTCTCGTTCACTGCATTCTATTTGTACA
TGAAACATAAAATGTCTTACTGGAAGCGGCGAGGGATACCGGAAGATAAA
GGATATTTCCCCTTCGGTAGCAAACATGCTTGGGATCTTTTACAAAGGAA
ATTGCCGTTCATGCATATGACAAATTATGCATATGAGACACACCCTGGTG
AAAAGGTCGTTGGAACTTATGATATGTTTGGAAGCCCAGCTCTGGTTATT
CGTGATCCTGACATTGCTAAATTAATCTTGGTCaaagattttgataattt
catGGACCGTAAACCATTTCATTTTAACATGTATGGTCCTAAAAGTAAGA
ATAACAGATACATGCCATACATGTTGTTAGAGCTTCGTGGCCAGAAATGG
AAGAATGTAAGATCGTCATTGACACCTATTTTCACTAGCGGCAAACTGAA
GAATATGATTCCACTCATACATAAAGTTGCTGATAACTGTGAAACATACT
TAGACAAAAATATTGGTGTTGAATTTGAGGCGAAGGAGTTGTTAAAGGGA
TACGCTTTGGATGTAATCATTTCAACCGGATTTGGTTATGAGAACGACAC
TATAAATAATCcagaaaatatcttcaaaaagcATGCTGATGTGATTAAAG
GGAAAACGTTCAGTCTGAAATTGATCATTGCTATTCTTATGTTCATGGCG
TGCCCCAGGCTTCTCCGGTGGTTGGATTTGTCcatattcaataaaaactc
gGAAGATTTCTTTGCAGCACTCATTGTTAAAACTATCAAGGAGCGCAAAG
AATGTGGACAGAGAAGAAACGATTTGATAGATGTCTGTGTTGATATTTTG
GAGAAAGAACGAAAAGAGAATGAGAAAAGTGTAGAAGATGAAAAAGAggc
aaaaagaagaaattacGAAATGGAAAAAATAATCATCGCTAATTCATTGA
TCATGTTTCTTGCAGGATTTGATACAGTCTCAAGCACTTCATCACTGATG
ATGTATTTCTTGGCAAAGCATCAAGATTGCCAAGAAAGACTCTACCAAGA
AGTTCAAGAAGCTATCGAATCCACCGGCTCCACAAACTTCGATTACGCTA
CCATTATGAATATGCCTTATAtggaaaaattcttccaagaaacCCTAAGA
AAGTATCCTTTTGTGCATTTAGAAAGGTGTTCCAAGGAGGAATATAAGAT
CCCTGACACTGATATAGTGATCCCAAAAGGTATTTTTGTTCGATATGCGG
CCACCGCTGTggtgaaagatgaaaaatatttccCCAATCCTGAAGTGTTC
GATCCTGAGAATTACAGTGCTGAAAAGAAAGTTGACAGACACCCGTTTGT
CTCTGGTGGCTTTGGACATGGACCGAGGAATTGTATTGCACAGCGATTCG
CGACAATGGAAGTCAAAATTGTGATTGCACGGTTGTTGAGCAAATATAAG
ATTGCACCATGTTCGAAAACTGTGGATGAATTGATTCCAGATCCCAGGTC
AAGAAGTGGGCAACCGAAAGGGGATATTTGGGTTACTGTTGAGAAAAGGT
GA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001616	XLOC_001616	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002944-exon-sc0000024-1491911889:72036..72332	TCONS_00002944-exon-sc0000024-1491911889:72036..72332	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1510915933:72036..72332	TCONS_00002944-exon-sc0000024-1510915933:72036..72332	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1575043694:72036..72332	TCONS_00002944-exon-sc0000024-1575043694:72036..72332	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1491911889:72409..73155	TCONS_00002944-exon-sc0000024-1491911889:72409..73155	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1510915933:72409..73155	TCONS_00002944-exon-sc0000024-1510915933:72409..73155	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1575043694:72409..73155	TCONS_00002944-exon-sc0000024-1575043694:72409..73155	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1491911889:73769..73943	TCONS_00002944-exon-sc0000024-1491911889:73769..73943	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1510915933:73769..73943	TCONS_00002944-exon-sc0000024-1510915933:73769..73943	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1575043694:73769..73943	TCONS_00002944-exon-sc0000024-1575043694:73769..73943	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1491911889:74837..76084	TCONS_00002944-exon-sc0000024-1491911889:74837..76084	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1510915933:74837..76084	TCONS_00002944-exon-sc0000024-1510915933:74837..76084	Clytia hemisphaerica	exon
TCONS_00002944-exon-sc0000024-1575043694:74837..76084	TCONS_00002944-exon-sc0000024-1575043694:74837..76084	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002944-protein	TCONS_00002944-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000024	supercontig	sc0000024:72036..76084 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.63779	3.51626	2.46186	3.03611	0.449915	0.384949	1.3151	1.40029	5.60484	4.07942	9.58653	4.80448	8.12856	6.12668	12.5892	16.2086	4.84095	4.40883	6.13238	4.28393	3.73724	3.49529	4.45027	4.8018	6.10615	8.67699	20.6612	15.2455	81.6117	58.3588

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001128	Cyt_P450
IPR002401	Cyt_P450_E_grp-I
IPR017972	Cyt_P450_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0020037	heme binding
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Blast

[Close]

BLAST of TCONS_00002944 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 224.942 bits (572), Expect = 5.351e-64
Identity = 147/456 (32.24%), Postives = 237/456 (51.97%), Query Frame = 1

Query:  457 KVVGTYDMFGSPALVIRDPDIAKLILVKD-FDNFMDRKPFHFNMYGPKSKNNRYMPYMLLELRGQKWKNVRSSLTPIFTSGKLKNMIPLIHKVADNCETYL--DKNIGVEFEAKELLKGYALDVIISTGFGYENDTINNPENIFKKHADVIKGKTFSLKLIIAILMFMACPRLLRWLDLSIFNKNSEDFFAALIVKTIKERKECGQR-RNDLIDVCVDILEKERKENEKSVEDEKEAKRRNYEMEKIIIANSLIMFLAGFDTVSSTSSLMMYFLAKHQDCQERLYQEVQEAIESTGSTNFDYATIMNMPYMEKFFQETLRKYPF-VHLERCSKEEYKIPDTDIVIPKGIFVRYAATAVVKDEKYFPNPEVFDPENYSAEKKVDRHPFVSGGFGHGPRNCIAQRFATMEVKIVIARLLSKYKIAPCSKTVDELIPDPRSRSG--QPKGDIWVTVEKR 1803
            KV G YD    P L I DPD+ K +LVK+ +  F +R+PF     GP      +M   +     ++WK +RS L+P FTSGKLK M+P+I +  D     L  +   G     K++   Y++DVI ST FG   D++NNP++ F ++   +    F     ++I +F     +L  L++ +F +   +F    + +  + R E  Q+ R D + + +D    +  E+ K++ D +            ++A S+I   AG++T SS  S +MY LA H D Q++L +E+   + +     +D  T++ M Y++    ETLR +P  + LER  K++ +I    + IPKG+ V   + A+ +D KY+  PE F PE +S + K +  P++   FG GPRNCI  RFA M +K+ + R+L  +   PC +T    IP   S  G  QP+  + + VE R
Sbjct:   70 KVWGFYDG-QQPVLAITDPDMIKTVLVKECYSVFTNRRPF-----GPVG----FMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLE------------LVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYD--TVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEI--NGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ---IPLKLSLGGLLQPEKPVVLKVESR 496

The following BLAST results are available for this feature:

BLAST of TCONS_00002944 vs. Swiss-Prot (Human)

BLAST of TCONS_00002944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CP3A4	5.351e-64	32.24	Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1...	[more]

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TCONS_00002944 (transcript) - C. hemisphaerica