|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002942 ID=TCONS_00002942|Name=TCONS_00002942|organism=Clytia hemisphaerica|type=transcript|length=1774bpRun BLAST on NCBI transcript from alignment at sc0000024:62487..82790+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002942 ID=TCONS_00002942|Name=TCONS_00002942|organism=Clytia hemisphaerica|type=transcript|length=20304bp|location=Sequence derived from alignment at sc0000024:62487..82790+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002942 vs. Swiss-Prot (Human)
Match: CNTN5 (Contactin-5 OS=Homo sapiens GN=CNTN5 PE=1 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 1.569e-52 Identity = 156/575 (27.13%), Postives = 246/575 (42.78%), Query Frame = 2
Query: 161 KLYLTCMASGNPAPNLEWSRDGVLFREGVPFNSFGGAGGKVKHILRGNALTITEVTGDEDSGRYRCIATNTVGSVFLEKI-----------------INIRAGR---------PHKRGFPMSG--NRFAFSYVTRDDLIF--------------SKNVGGVRCIMVNF---GFIVASVQMVLWQAYKVINEVRKPILIQHMPETMEALVDTSFSMSCGATGYPLPKYRWQYQGIGLRSRWLNGSTELNFEFFRIKQATHVLEISRVTKYSGGTFRCYAYNTLGQTKKTGQLTVLFPPKMIRNFEDSYDVRIGSKWSFNCSATGAPTPKYEWYHNGTLVDAENDVYRTLEGGVLTLLQARYIDNGIYICIAINKVTSVTISTQLKIKAMSPVFNV-PIMDPVFVYEESSMEVACDILGGPLPTITWLKGNAPVTTISDRYKVMPSGALHITKANEDDIGKYTCRGENVLGAVEQTTTIQLLKPTVITNPPEKLTYQVGWHYGMMYCGASHDERLDLRIEWYKAGVLMNKFDSRIYLEA-RASGPPRILYFHDFKITDAGNYSCHAYTKYGDKISEQ 1744
K+ L C GNP P+ W R+G ++ L I+ + +DSG Y+C+ATNTVGS+ + +++R G+ PH S N F S+V D F + +VG C++ N +++ + + V+ E I + H P T+ A T+ M C A G P+P W + S+ R++++ VLEI V G + C A N+ G+ GQL V P + D+ + GS + C ATG P P Y W NG + ++ V + GVL + D G+Y C+A NK ++ S +LKI A +P F + + + V ++ + + C G P PTI+W KG+ V + R ++P G+L I A++ D GKY CRGENV G+ E ++ + +PT I P++ VG ++ C A HD LD+ W G ++ + + E+ RA L + + AG Y C T D +S++
Sbjct: 118 KVALNCEVRGNPVPSYRWLRNGTEI----------DLESDYRYSLIDGTFIISNPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSVREGQGVVLMCSPPPHSPEIIYSWVFNEFP-SFVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVTNARVLSPPTPLTLRNDGVMGEYEPKIEV-HFPFTVTAAKGTTVKMECFALGNPVPTITWMKVNGYIPSK------------ARLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKLNDT-QLDSGSPLRWECKATGKPRPTYRWLKNGVPLSPQSRV--EMVNGVLMIHNVNQSDAGMYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVTKDQEVVIECKPQGSPKPTISWKKGDRAVRE-NKRIAILPDGSLRILNASKSDEGKYVCRGENVFGSAEIIASLSVKEPTRIELTPKRTELTVGESI-VLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFESIRAQASSADLMIRNILLMHAGRYGCRVQTT-ADSVSDE 662 The following BLAST results are available for this feature:
BLAST of TCONS_00002942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.