TCONS_00002940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002940
Unique NameTCONS_00002940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002940 ID=TCONS_00002940|Name=TCONS_00002940|organism=Clytia hemisphaerica|type=transcript|length=313bp
NNTTTCACAGTCGTACAtacaataaaatatttcttctttaGTTTCTTTCT
AATTTGTTTTCCTTCCCATTCCAATGTTGACTCGTCTTGTGATATATCTG
ATATGTGATATTGCTCCTCCAATTCAGATCTGCCTTCTTCTTGATTTGCT
TCGTTATTTATACTTTTCTGAGATTTGATTATTCGTCAATTTTCGAATCG
TCTTGGTCACGTTTTTTGCAAGGGAAAGTCCTTTTTCTTTCTGAAGGTAA
ATTCCTGAAGAGATCACGTTTCTTGCAGGGAAAGTACTTTTCTTTGTGAA
GGTAAATTCCTGA
Run BLAST on NCBI

transcript from alignment at sc0000023:1031140..1031452

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002940 ID=TCONS_00002940|Name=TCONS_00002940|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at sc0000023:1031140..1031452 (Clytia hemisphaerica)
TCAGGAATTTACCTTCACAAAGAAAAGTACTTTCCCTGCAAGAAACGTGA
TCTCTTCAGGAATTTACCTTCAGAAAGAAAAAGGACTTTCCCTTGCAAAA
AACGTGACCAAGACGATTCGAAAATTGACGAATAATCAAATCTCAGAAAA
GTATAAATAACGAAGCAAATCAAGAAGAAGGCAGATCTGAATTGGAGGAG
CAATATCACATATCAGATATATCACAAGACGAGTCAACATTGGAATGGGA
AGGAAAACAAATTAGAAAGAAACtaaagaagaaatattttattgtaTGTA
CGACTGTGAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001613XLOC_001613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002940-exon-sc0000023-1491911889:1031140..1031452TCONS_00002940-exon-sc0000023-1491911889:1031140..1031452Clytia hemisphaericaexon
TCONS_00002940-exon-sc0000023-1510915933:1031140..1031452TCONS_00002940-exon-sc0000023-1510915933:1031140..1031452Clytia hemisphaericaexon
TCONS_00002940-exon-sc0000023-1575043694:1031140..1031452TCONS_00002940-exon-sc0000023-1575043694:1031140..1031452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:1031140..1031452 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34103	0.332558	0.772263	0.37777	5.05888	8.35861	11.3996	9.85127	3.44855	4.62756	6.21916	3.40686	4.30936	2.59097	0.968241	0.207814	0.51202	0.787206	0	2.27612	0.659454	0.482488	1.17305	2.13295	8.05527	20.5871	0	0	0.757033	0.385649
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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