TCONS_00002917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002917
Unique NameTCONS_00002917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002917 ID=TCONS_00002917|Name=TCONS_00002917|organism=Clytia hemisphaerica|type=transcript|length=689bp
ctgagacaggggtgttttatctTAAAGTGTTTTATGTTTTagtacagttt
ttgaaaataattatagcTTCACATCacaattgaaagttttttaccttATT
ACATTAATTGCAAGGTAGATTTAATGCCAAACTGCAATTAAATGTAGCTT
TTTAACTGCTTTAGCAATTTTAGTAAATTATAACAAGAAGGATAACATAA
TGTTCAAAGTTCTATCGTGTCTGACATAGTGAGTTACCACTTTAAATACT
GTTTTGATTTTCCCATTAACTTTTATGAACATTTTCATCACCATTTTATT
GGAAGTGAGagtttttattgttattttttatgaaatctcttttttttaga
tttttttattttcttctgtTTTAACATATCTTTTAAGGTCGTCCTGACAG
TAAGGCTGTTTCCAGATGCAAGacattttaaaaaatgaattaagattttt
tatagcTTTAAACAATGCTaaagttttaagttttgtttCAAAGTGAAACG
CATCGAAAATAGTTGAATAGTTAAATAAAGACGACCTCGTTAAGTTGTTC
TTTCAAGTTGTATCCAAGCAATCATTGCTTTAAACTGATATCTTTCAgta
tatgttttgattttcaaaacgttttgatatttttttaattgagcttgatt
tactttgattttattATGATTTAAAGCTTTGTTTTTGAG
Run BLAST on NCBI

transcript from alignment at sc0000023:442050..442738

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002917 ID=TCONS_00002917|Name=TCONS_00002917|organism=Clytia hemisphaerica|type=transcript|length=689bp|location=Sequence derived from alignment at sc0000023:442050..442738 (Clytia hemisphaerica)
CTCAAAAACAAAGCTTTAAATCATaataaaatcaaagtaaatcaagctca
attaaaaaaatatcaaaacgttttgaaaatcaaaacatatacTGAAAGAT
ATCAGTTTAAAGCAATGATTGCTTGGATACAACTTGAAAGAACAACTTAA
CGAGGTCGTCTTTATTTAACTATTCAACTATTTTCGATGCGTTTCACTTT
GaaacaaaacttaaaactttAGCATTGTTTAAAgctataaaaaatcttaa
ttcattttttaaaatgtCTTGCATCTGGAAACAGCCTTACTGTCAGGACG
ACCTTAAAAGATATGTTAAAacagaagaaaataaaaaaatctaaaaaaaa
gagatttcataaaaaataacaataaaaactCTCACTTCCAATAAAATGGT
GATGAAAATGTTCATAAAAGTTAATGGGAAAATCAAAACAGTATTTAAAG
TGGTAACTCACTATGTCAGACACGATAGAACTTTGAACATTATGTTATCC
TTCTTGTTATAATTTACTAAAATTGCTAAAGCAGTTAAAAAGCTACATTT
AATTGCAGTTTGGCATTAAATCTACCTTGCAATTAATGTAATaaggtaaa
aaactttcaattgtGATGTGAAgctataattattttcaaaaactgtactA
AAACATAAAACACTTTAagataaaacacccctgtctcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001590XLOC_001590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002917-exon-sc0000023-1491911889:442050..442738TCONS_00002917-exon-sc0000023-1491911889:442050..442738Clytia hemisphaericaexon
TCONS_00002917-exon-sc0000023-1510915933:442050..442738TCONS_00002917-exon-sc0000023-1510915933:442050..442738Clytia hemisphaericaexon
TCONS_00002917-exon-sc0000023-1575043694:442050..442738TCONS_00002917-exon-sc0000023-1575043694:442050..442738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:442050..442738 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.073912	0.288303	0	0.0818746	0.498372	0.157528	0.475127	0.266885	0.809694	0.308596	1.04836	0.49225	0.245783	0.663644	0.503636	0.405359	0.61034	0.511837	0.0785701	0.0822179	1.35778	0.836563	0.762714	0.231139	0	0.0708233	0.50674	0.757129	0.574256	0.668658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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