TCONS_00002912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002912
Unique NameTCONS_00002912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002912 ID=TCONS_00002912|Name=TCONS_00002912|organism=Clytia hemisphaerica|type=transcript|length=987bp
atatttttctagaaaagataagaaaaataaataaaataataactATGGCA
GAGTTGATGCACATTGGCAAGCATTGTGGGCATTCAGAATGTAACCAGTT
GGATTTTCTGCCTATTCAATGTCAACTTTGTAAAAAGGTGTTCTGTAGTT
TACACGTCAAGTCTAAGGAGCATGGTTGTAAATCGCAAGATAATATTCTA
ACAGACGAAGATGTTCAAAATTTAACGGCTCCAGCCTCGTTTTCGTGTAC
TTATGGAACTTGTAAAGGACGAGAATTGACACCAATAACATGTGATAAAT
GCAATGAGCaattttgtttgaaacatcGGTTACCTGGTGACCATGAGTGT
AAACAAATGACATTGTCCGAAAAAAGTGAATATGATGGTTTAACAGCGAA
agagaaagttgaaaaaattacTGGTAAACCTTTAGTGACCGAGAAGACTT
CAGGACGGGTgggaaaaaaatcaacaaagacCTCAAACAAAGTTttagaa
atgaaattgaaaatgaaagcgaAAGGAGAAAATTCAATACCTATTCCAGA
GAGAATATACTTTGAAGTGAAATTTAATATAGAGAGCTGTAAAACTAAAT
CGTTACCCTTGTTTTTCAGTAAGGAGTATACTATTGGTAGAATTATTGAC
TTGATTGCAAAATATGCGAAACTCTTGAATCAGAATCATGTGTCAACTGC
ACCAAAACTACGCTTGTATGTTGAAGATGGTGTATATTTTCCTGTCgatt
caaaattaaagaatttgCTTGAAGAGGAATCAAATGGTTTGAGGAATTTC
ggtgaaattgaaatgaaatatgtGAAATAAGATTCATGTTGTTTTTGAGT
GTTAAACTTTCATGAGAATTATTATTTTTGGTGGGTGCAAAAAGCCTTCA
GAATCGCCAAGTTCATAATGTTTACCCAGGGGAGGGTACGAAAATCTCAg
acattaaaaaaattagaaatccttttagtaccaGATA
Run BLAST on NCBI

protein sequence of TCONS_00002912-protein

>TCONS_00002912-protein ID=TCONS_00002912-protein|Name=TCONS_00002912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
IFLEKIRKINKIITMAELMHIGKHCGHSECNQLDFLPIQCQLCKKVFCSL
HVKSKEHGCKSQDNILTDEDVQNLTAPASFSCTYGTCKGRELTPITCDKC
NEQFCLKHRLPGDHECKQMTLSEKSEYDGLTAKEKVEKITGKPLVTEKTS
GRVGKKSTKTSNKVLEMKLKMKAKGENSIPIPERIYFEVKFNIESCKTKS
LPLFFSKEYTIGRIIDLIAKYAKLLNQNHVSTAPKLRLYVEDGVYFPVDS
KLKNLLEEESNGLRNFGEIEMKYVK
Run BLAST on NCBI

transcript from alignment at sc0000023:172472..173458

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002912 ID=TCONS_00002912|Name=TCONS_00002912|organism=Clytia hemisphaerica|type=transcript|length=987bp|location=Sequence derived from alignment at sc0000023:172472..173458 (Clytia hemisphaerica)
TATCtggtactaaaaggatttctaatttttttaatgtcTGAGATTTTCGT
ACCCTCCCCTGGGTAAACATTATGAACTTGGCGATTCTGAAGGCTTTTTG
CACCCACCAAAAATAATAATTCTCATGAAAGTTTAACACTCAAAAACAAC
ATGAATCTTATTTCacatatttcatttcaatttcaccGAAATTCCTCAAA
CCATTTGATTCCTCTTCAAGcaaattctttaattttgaatcGACAGGAAA
ATATACACCATCTTCAACATACAAGCGTAGTTTTGGTGCAGTTGACACAT
GATTCTGATTCAAGAGTTTCGCATATTTTGCAATCAAGTCAATAATTCTA
CCAATAGTATACTCCTTACTGAAAAACAAGGGTAACGATTTAGTTTTACA
GCTCTCTATATTAAATTTCACTTCAAAGTATATTCTCTCTGGAATAGGTA
TTGAATTTTCTCCTTtcgctttcattttcaatttcatttctaaAACTTTG
TTTGAGgtctttgttgatttttttcccACCCGTCCTGAAGTCTTCTCGGT
CACTAAAGGTTTACCAgtaattttttcaactttctctTTCGCTGTTAAAC
CATCATATTCACTTTTTTCGGACAATGTCATTTGTTTACACTCATGGTCA
CCAGGTAACCgatgtttcaaacaaaattGCTCATTGCATTTATCACATGT
TATTGGTGTCAATTCTCGTCCTTTACAAGTTCCATAAGTACACGAAAACG
AGGCTGGAGCCGTTAAATTTTGAACATCTTCGTCTGTTAGAATATTATCT
TGCGATTTACAACCATGCTCCTTAGACTTGACGTGTAAACTACAGAACAC
CTTTTTACAAAGTTGACATTGAATAGGCAGAAAATCCAACTGGTTACATT
CTGAATGCCCACAATGCTTGCCAATGTGCATCAACTCTGCCATagttatt
attttatttatttttcttatcttttctagaaaaatat

Coding sequence (CDS) from alignment at sc0000023:172472..173458

>TCONS_00002912 ID=TCONS_00002912|Name=TCONS_00002912|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0000023:172472..173458 (Clytia hemisphaerica)
TTATTTCacatatttcatttcaatttcaccGAAATTCCTCAAACCATTTG
ATTCCTCTTCAAGcaaattctttaattttgaatcGACAGGAAAATATACA
CCATCTTCAACATACAAGCGTAGTTTTGGTGCAGTTGACACATGATTCTG
ATTCAAGAGTTTCGCATATTTTGCAATCAAGTCAATAATTCTACCAATAG
TATACTCCTTACTGAAAAACAAGGGTAACGATTTAGTTTTACAGCTCTCT
ATATTAAATTTCACTTCAAAGTATATTCTCTCTGGAATAGGTATTGAATT
TTCTCCTTtcgctttcattttcaatttcatttctaaAACTTTGTTTGAGg
tctttgttgatttttttcccACCCGTCCTGAAGTCTTCTCGGTCACTAAA
GGTTTACCAgtaattttttcaactttctctTTCGCTGTTAAACCATCATA
TTCACTTTTTTCGGACAATGTCATTTGTTTACACTCATGGTCACCAGGTA
ACCgatgtttcaaacaaaattGCTCATTGCATTTATCACATGTTATTGGT
GTCAATTCTCGTCCTTTACAAGTTCCATAAGTACACGAAAACGAGGCTGG
AGCCGTTAAATTTTGAACATCTTCGTCTGTTAGAATATTATCTTGCGATT
TACAACCATGCTCCTTAGACTTGACGTGTAAACTACAGAACACCTTTTTA
CAAAGTTGACATTGAATAGGCAGAAAATCCAACTGGTTACATTCTGAATG
CCCACAATGCTTGCCAATGTGCATCAACTCTGCCATagttattattttat
ttatttttcttatcttttctagaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001585XLOC_001585Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002912-proteinTCONS_00002912-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002912-exon-sc0000023-1491911889:172472..173458TCONS_00002912-exon-sc0000023-1491911889:172472..173458Clytia hemisphaericaexon
TCONS_00002912-exon-sc0000023-1510915933:172472..173458TCONS_00002912-exon-sc0000023-1510915933:172472..173458Clytia hemisphaericaexon
TCONS_00002912-exon-sc0000023-1575043694:172472..173458TCONS_00002912-exon-sc0000023-1575043694:172472..173458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:172472..173458 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.5819	35.5302	88.2908	101.735	22.9994	15.113	10.9047	11.5261	6.68634	7.04456	6.46802	4.0696	5.39837	3.59053	6.62883	4.97407	5.92225	5.85959	2.81156	3.5508	3.924	4.51615	49.096	42.7816	8.3232	11.623	8.19121	7.5407	33.3545	33.7767
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000058Znf_AN1
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00002912 vs. Swiss-Prot (Human)
Match: ZFAN1 (AN1-type zinc finger protein 1 OS=Homo sapiens GN=ZFAND1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.582e-46
Identity = 99/266 (37.22%), Postives = 142/266 (53.38%), Query Frame = 3 
Query:   45 MAELMHIGKHCGHSECNQLDFLPIQCQLCKKVFCSLHVKSKEHGCKS----QDNILTDEDVQNLTAPASFSCTYGTCKGRELTPITCDKCNEQFCLKHRLPGDHECKQMTLSEKSEYDGLTAKEKVEKITGKPLVTEKTSGRV-GKKSTKTSNKVLEMKLKMKAKGENSIPIPERIYFEVKFNIESCKTKSLPLFFSKEYTIGRIIDLIAKYAKLLNQNHVSTAPKLRL-YVEDGVYFPVDSKLKNLLEEESNGLRNFGEIEMKYV 824
            MAEL  IG+HC    C Q DFLP  C  C  +FC  H   + HGC       + + TD+         S+ C++  C  REL  + C  C + FCL+HR   DHEC+++ + +      + A +K+ K        E  S R  G K+++T+ KV  MKLKM A G+ S+P  ERIYF+V F  +  K KS P+FF   ++IG+ ID  A  A+L N N+  TA KLRL ++  G   P+D  L+  + +E   L N G I ++Y+
Sbjct:    1 MAEL-DIGQHCQVEHCRQRDFLPFVCDDCSGIFCLEHRSRESHGCPEVTVINERLKTDQHT-------SYPCSFKDCAERELVAVICPYCEKNFCLRHRHQSDHECEKLEIPKPR----MAATQKLVKDIIDSKTGETASKRWKGAKNSETAAKVALMKLKMHADGDKSLPQTERIYFQV-FLPKGSKEKSKPMFFCHRWSIGKAIDFAASLARLKNDNNKFTAKKLRLCHITSGEALPLDHTLETWIAKEDCPLYNGGNIILEYL 253
The following BLAST results are available for this feature:
BLAST of TCONS_00002912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZFAN11.582e-4637.22AN1-type zinc finger protein 1 OS=Homo sapiens GN=... [more]
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