TCONS_00002911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002911
Unique NameTCONS_00002911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002911 ID=TCONS_00002911|Name=TCONS_00002911|organism=Clytia hemisphaerica|type=transcript|length=447bp
GCAAGAAATTGATtatgttgcaaaaatcagcaCTTTTGAGAAAATGGTCC
CGAAAAGACAAAATGTGTCCTAAAATGaccattttgtcaaaatgtcccCA
AAAATTTAAGTACATGATTGTGTAATGAATGACAACTTCTTTAAAATGGG
TGGATGGTAATAAATGCTCCAAAACAGTCCAACACCCTTTTTAGtatgta
aatatttttacatttaTGTCTGACATTTTAGTACCCACCCCCCTGTGTTA
CGTTGAATATTGTTACGACTTCTATGTTTataattttaccaattttagaA
TCCAAGAATTGCTTAAAAATATCCTACGTTGTAGTTGTCTTGTAATTATT
TCATTCACTGTATTCtgtatttaatttatttttaacatcaataattttca
ttgtttttaattattctaTTTAagttaataaaatctttaaatgcATA
Run BLAST on NCBI

transcript from alignment at sc0000023:171790..172236

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002911 ID=TCONS_00002911|Name=TCONS_00002911|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0000023:171790..172236 (Clytia hemisphaerica)
TATgcatttaaagattttattaactTAAAtagaataattaaaaacaatga
aaattattgatgttaaaaataaattaaatacaGAATACAGTGAATGAAAT
AATTACAAGACAACTACAACGTAGGATATTTTTAAGCAATTCTTGGATtc
taaaattggtaaaattatAAACATAGAAGTCGTAACAATATTCAACGTAA
CACAGGGGGGTGGGTACTAAAATGTCAGACAtaaatgtaaaaatatttac
ataCTAAAAAGGGTGTTGGACTGTTTTGGAGCATTTATTACCATCCACCC
ATTTTAAAGAAGTTGTCATTCATTACACAATCATGTACTTAAATTTTTGg
ggacattttgacaaaatggtCATTTTAGGACACATTTTGTCTTTTCGGGA
CCATTTTCTCAAAAGtgctgatttttgcaacataATCAATTTCTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001584XLOC_001584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002911-exon-sc0000023-1491911889:171790..172236TCONS_00002911-exon-sc0000023-1491911889:171790..172236Clytia hemisphaericaexon
TCONS_00002911-exon-sc0000023-1510915933:171790..172236TCONS_00002911-exon-sc0000023-1510915933:171790..172236Clytia hemisphaericaexon
TCONS_00002911-exon-sc0000023-1575043694:171790..172236TCONS_00002911-exon-sc0000023-1575043694:171790..172236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:171790..172236 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68319	3.34335	11.4771	13.21	0.603072	0.476556	0.574944	0.538256	0.125615	0.777973	0.453072	0.0992772	0.495696	0.102957	0.169289	0.27251	0.895227	0.458789	0	0.331635	0.864754	0.421797	5.12749	4.19547	0	0.714185	1.83959	1.30884	2.48178	2.1914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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