|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002910 ID=TCONS_00002910|Name=TCONS_00002910|organism=Clytia hemisphaerica|type=transcript|length=1047bp
TAGAAAAATCTACTTGAATTAGTTCGATCGTTGGTGAGAGACAAATGTGT
GAAAGTATCAATTTATTCACCTGGACATAAACGATTTTTTGATATCCATA
TTGGTAATGTTTACGACGTTTTTGAAACTGGACGATTCGGAGAAGATCTA
AGCATTGATTTTGTGGAAGTACTTAATTATTTCATAGATATACTACAAGT
GAATACCGAGAGCGTCAAGAGCAGTGTTGAACAGACATTCTTATATATCC
ATTTCCCAAGAAATTACCCATCGTCTACCGACATTTTTCTTTCGAATCAG
TTAAAATCATTGCATGTACAGCACAGATACAATGTCATCTTTCTCTGTTT
ATATCAGAGTGATTTATGCACAATGTGTAAAAAATGGTTACCGCAACACC
ATTTAGTCATCTTCTTTGCTTTACCAAACCAATTTTCTCTTACAGATATT
ACAAAAATTATGTTGGATTTATTACGAAATCCAAATTACAACCGGTACAC
AAATTATAAAACCTTGGCTCACCACTGTAACGAGACAAAcaacaaattca
aaatctttttttggaatattaaAAAAGGGCCTGGAGAGAAACAATCAGAA
ATGTTTCTCAATctttatgttttaaatttctttaccATCATATTTCCCAA
AGCTGACAGCTTCATGGTCGTGCAACTAGGAGATAATTGTATTGCTTCAT
CGATTGGAAGTTCTTTGTTCCCAAACCATACAAATTATAATGCAGATGAT
AGATTTATCGCCTTGAGATCTCATTTATATAGCAGCAAAACGAAGGCTAT
TCATGTCAATTACGAAATGAAAAACTCTGCATTTCAAAGAGATGAAGATA
TTGTACGCACAGAGAACACTGTAAATATAATAGTGACCACAGACCCAATC
AAGGCTCCTTTCCTTAAAAATGGCGAGATCATTATTCACGAAGAAGATTT
GATGAGTCATCATTTCCTCACATTATTGATCCACAGGATTAATTTTGTTT
TATGTCACATCAAGTAAAATGAAAGAACATGACGAGCTTGGCGATGG Run BLAST on NCBI protein sequence of TCONS_00002910-protein >TCONS_00002910-protein ID=TCONS_00002910-protein|Name=TCONS_00002910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MCKKWLPQHHLVIFFALPNQFSLTDITKIMLDLLRNPNYNRYTNYKTLAH
HCNETNNKFKIFFWNIKKGPGEKQSEMFLNLYVLNFFTIIFPKADSFMVV
QLGDNCIASSIGSSLFPNHTNYNADDRFIALRSHLYSSKTKAIHVNYEMK
NSAFQRDEDIVRTENTVNIIVTTDPIKAPFLKNGEIIIHEEDLMSHHFLT
LLIHRINFVLCHIK Run BLAST on NCBI transcript from alignment at sc0000023:165043..166089 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002910 ID=TCONS_00002910|Name=TCONS_00002910|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at sc0000023:165043..166089 (Clytia hemisphaerica)
CCATCGCCAAGCTCGTCATGTTCTTTCATTTTACTTGATGTGACATAAAA
CAAAATTAATCCTGTGGATCAATAATGTGAGGAAATGATGACTCATCAAA
TCTTCTTCGTGAATAATGATCTCGCCATTTTTAAGGAAAGGAGCCTTGAT
TGGGTCTGTGGTCACTATTATATTTACAGTGTTCTCTGTGCGTACAATAT
CTTCATCTCTTTGAAATGCAGAGTTTTTCATTTCGTAATTGACATGAATA
GCCTTCGTTTTGCTGCTATATAAATGAGATCTCAAGGCGATAAATCTATC
ATCTGCATTATAATTTGTATGGTTTGGGAACAAAGAACTTCCAATCGATG
AAGCAATACAATTATCTCCTAGTTGCACGACCATGAAGCTGTCAGCTTTG
GGAAATATGATggtaaagaaatttaaaacataaagATTGAGAAACATTTC
TGATTGTTTCTCTCCAGGCCCTTTTttaatattccaaaaaaagattttga
atttgttgTTTGTCTCGTTACAGTGGTGAGCCAAGGTTTTATAATTTGTG
TACCGGTTGTAATTTGGATTTCGTAATAAATCCAACATAATTTTTGTAAT
ATCTGTAAGAGAAAATTGGTTTGGTAAAGCAAAGAAGATGACTAAATGGT
GTTGCGGTAACCATTTTTTACACATTGTGCATAAATCACTCTGATATAAA
CAGAGAAAGATGACATTGTATCTGTGCTGTACATGCAATGATTTTAACTG
ATTCGAAAGAAAAATGTCGGTAGACGATGGGTAATTTCTTGGGAAATGGA
TATATAAGAATGTCTGTTCAACACTGCTCTTGACGCTCTCGGTATTCACT
TGTAGTATATCTATGAAATAATTAAGTACTTCCACAAAATCAATGCTTAG
ATCTTCTCCGAATCGTCCAGTTTCAAAAACGTCGTAAACATTACCAATAT
GGATATCAAAAAATCGTTTATGTCCAGGTGAATAAATTGATACTTTCACA
CATTTGTCTCTCACCAACGATCGAACTAATTCAAGTAGATTTTTCTA Coding sequence (CDS) from alignment at sc0000023:165043..166089 >TCONS_00002910 ID=TCONS_00002910|Name=TCONS_00002910|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000023:165043..166089 (Clytia hemisphaerica)
TTACTTGATGTGACATAAAACAAAATTAATCCTGTGGATCAATAATGTGA
GGAAATGATGACTCATCAAATCTTCTTCGTGAATAATGATCTCGCCATTT
TTAAGGAAAGGAGCCTTGATTGGGTCTGTGGTCACTATTATATTTACAGT
GTTCTCTGTGCGTACAATATCTTCATCTCTTTGAAATGCAGAGTTTTTCA
TTTCGTAATTGACATGAATAGCCTTCGTTTTGCTGCTATATAAATGAGAT
CTCAAGGCGATAAATCTATCATCTGCATTATAATTTGTATGGTTTGGGAA
CAAAGAACTTCCAATCGATGAAGCAATACAATTATCTCCTAGTTGCACGA
CCATGAAGCTGTCAGCTTTGGGAAATATGATggtaaagaaatttaaaaca
taaagATTGAGAAACATTTCTGATTGTTTCTCTCCAGGCCCTTTTttaat
attccaaaaaaagattttgaatttgttgTTTGTCTCGTTACAGTGGTGAG
CCAAGGTTTTATAATTTGTGTACCGGTTGTAATTTGGATTTCGTAATAAA
TCCAACATAATTTTTGTAATATCTGTAAGAGAAAATTGGTTTGGTAAAGC
AAAGAAGATGACTAAATGGTGTTGCGGTAACCATTTTTTACACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002910-exon-sc0000023-1491911889:165043..166089 | TCONS_00002910-exon-sc0000023-1491911889:165043..166089 | Clytia hemisphaerica | exon |
| TCONS_00002910-exon-sc0000023-1510915933:165043..166089 | TCONS_00002910-exon-sc0000023-1510915933:165043..166089 | Clytia hemisphaerica | exon |
| TCONS_00002910-exon-sc0000023-1575043694:165043..166089 | TCONS_00002910-exon-sc0000023-1575043694:165043..166089 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:165043..166089 . |
Blast
The following BLAST results are available for this feature:
|
