TCONS_00002907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002907
Unique NameTCONS_00002907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002907 ID=TCONS_00002907|Name=TCONS_00002907|organism=Clytia hemisphaerica|type=transcript|length=321bp
GGAAGAGGCAAGATCGATACAACCGAAGTTTATTCCAGGTTGCTGTGTCA
GGTTTTGAAAGACCACGATTCCACGGCCATCATCAACAAGGCAATGAAAT
TCTTTTTCGAGGCTGTCCGAAGAAAACTGCGCAAAAGAGATGGGCTCACA
CTAACCGAGAATCcgaattttgaagattttgaggaGGGTGAACCATTTGC
CAAACTGACAATTAGACCATCAATGCCGCAAAATTCGAGACAAGATCTCC
ACAAAGCCATGAAAAATATCCAATTTTTGACTATAGCCTTTACCATTGAC
GATGCAGAATCTTTCAATGGT
Run BLAST on NCBI

protein sequence of TCONS_00002907-protein

>TCONS_00002907-protein ID=TCONS_00002907-protein|Name=TCONS_00002907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
GRGKIDTTEVYSRLLCQVLKDHDSTAIINKAMKFFFEAVRRKLRKRDGLT
LTENPNFEDFEEGEPFAKLTIRPSMPQNSRQDLHKAMKNIQFLTIAFTID
DAESFNG
Run BLAST on NCBI

transcript from alignment at sc0000023:88765..89085

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002907 ID=TCONS_00002907|Name=TCONS_00002907|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at sc0000023:88765..89085 (Clytia hemisphaerica)
ACCATTGAAAGATTCTGCATCGTCAATGGTAAAGGCTATAGTCAAAAATT
GGATATTTTTCATGGCTTTGTGGAGATCTTGTCTCGAATTTTGCGGCATT
GATGGTCTAATTGTCAGTTTGGCAAATGGTTCACCCtcctcaaaatcttc
aaaattcgGATTCTCGGTTAGTGTGAGCCCATCTCTTTTGCGCAGTTTTC
TTCGGACAGCCTCGAAAAAGAATTTCATTGCCTTGTTGATGATGGCCGTG
GAATCGTGGTCTTTCAAAACCTGACACAGCAACCTGGAATAAACTTCGGT
TGTATCGATCTTGCCTCTTCC

Coding sequence (CDS) from alignment at sc0000023:88765..89085

>TCONS_00002907 ID=TCONS_00002907|Name=TCONS_00002907|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000023:88765..89085 (Clytia hemisphaerica)
ACCATTGAAAGATTCTGCATCGTCAATGGTAAAGGCTATAGTCAAAAATT
GGATATTTTTCATGGCTTTGTGGAGATCTTGTCTCGAATTTTGCGGCATT
GATGGTCTAATTGTCAGTTTGGCAAATGGTTCACCCtcctcaaaatcttc
aaaattcgGATTCTCGGTTAGTGTGAGCCCATCTCTTTTGCGCAGTTTTC
TTCGGACAGCCTCGAAAAAGAATTTCATTGCCTTGTTGATGATGGCCGTG
GAATCGTGGTCTTTCAAAACCTGACACAGCAACCTGGAATAAACTTCGGT
TGTATCGATCTTGCCTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001580XLOC_001580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002907-exon-sc0000023-1491911889:88765..89085TCONS_00002907-exon-sc0000023-1491911889:88765..89085Clytia hemisphaericaexon
TCONS_00002907-exon-sc0000023-1510915933:88765..89085TCONS_00002907-exon-sc0000023-1510915933:88765..89085Clytia hemisphaericaexon
TCONS_00002907-exon-sc0000023-1575043694:88765..89085TCONS_00002907-exon-sc0000023-1575043694:88765..89085Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002907-proteinTCONS_00002907-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:88765..89085 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58366	3.70636	1.43448	0.701707	0.42713	0.675048	1.62883	1.14367	4.00356	4.95905	7.38051	15.1878	0.631945	1.31256	0.359701	0.77203	1.18885	0.243706	0	0.70465	0.612468	0.448111	0.363158	0.990491	1.02018	2.12447	0.434302	0.463499	0.351547	0.358171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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