TCONS_00002901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002901
Unique NameTCONS_00002901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002901 ID=TCONS_00002901|Name=TCONS_00002901|organism=Clytia hemisphaerica|type=transcript|length=1203bp
AAGTTCTTTTGCAAAATGTGATAAGGTATGACAGCCAACTCTGTGCctaa
aaaatcgccattttgaatATGGAACACGCCGTATCTCTTTTCACGCGGCA
GAAGACAGTTCGAGGAAGCACAAAAGCACGGCGATCAAAGCCTCATCATG
TCTAATAGATATGCACGACCACCAAACACATCTTTATACATTAGAAACTT
AGGCACTAGCACAAGGCCTGAAGATCTCCGACGCATCTTTGCTAAGTATG
GACCTATTCGAGATGTTTATATTCCACTAGACTATTATTCCAGGGAACCA
AGAGGGTTTGCTTATGTTCAATATGAAGATATTCGTGATGCAGAAGATGC
ACTTCACTATGAGAATCATGTCCGTTGTCAAGGCCGAGAATTGGATGTCC
AATTCGCAGAAGGAGATAGAAAGACCCCCGGACAAATGAGAACTCGAGAT
GGTGACGATGACAGATATGGTGGTGGATATCGTGGCGGAGGGAGAAGAAG
AAGTCGTAGTCGATCACCACCCAGGAGGAGACGTAGAAGCCCATCCAGAT
CCCGTTCACGCTCGAGATCACGCGGCCGTCGTCGAAGCCCATCTCGTAGT
CCGCGTCGATCAAAAAGTCGTTCGCGCTCCCGTTCGCCTCGTAAACGTTC
TCGCTCGCACAGTCCTCGAAAAGTATCCAGAAGCCGTAGCAAGAGTAGGA
GCCGTAGCCGCAGTCGTAGCCCGAGTAGAAGTAGAAGTCGTTCAAAGAGT
AGATCACCTCGCAAATCTCGCTCGAGGTCACCATGAATTGGGAGGGAACA
AGAATATAGAAGAGAGCGAAATATTTATAGACACTCTTTACAGCTGGGCA
ACGATATGTTTCGATCACCTATATTTACATCTTTTTGGAATGTAATAATC
ACGTGGCAAATCTCTGAGTAAGGTGTTAAAAATCGAGTACAATCCCACAT
GATTTTGTAtatcttttcattttaaaacagcGAGTAGAAATTGTTTTTGT
GATGTAGTGTAAATAAACaacatttttaacaaacttttttaagAACTTAT
TTTCACTGTACTTACCTGTCGAAGGTttacataaattttttttctctctc
tcacAGATCGTCTCGCACATGTCCCGAGATAAACATGATCTTGCTTTACC
TGGCTATATCGGGCCCAATTTTCCTGGTGGATTTTAATCAGAAACAAAGT
CTT
Run BLAST on NCBI

protein sequence of TCONS_00002901-protein

>TCONS_00002901-protein ID=TCONS_00002901-protein|Name=TCONS_00002901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MSNRYARPPNTSLYIRNLGTSTRPEDLRRIFAKYGPIRDVYIPLDYYSRE
PRGFAYVQYEDIRDAEDALHYENHVRCQGRELDVQFAEGDRKTPGQMRTR
DGDDDRYGGGYRGGGRRRSRSRSPPRRRRRSPSRSRSRSRSRGRRRSPSR
SPRRSKSRSRSRSPRKRSRSHSPRKVSRSRSKSRSRSRSRSPSRSRSRSK
SRSPRKSRSRSP
Run BLAST on NCBI

transcript from alignment at sc0000023:961465..967261-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002901 ID=TCONS_00002901|Name=TCONS_00002901|organism=Clytia hemisphaerica|type=transcript|length=5797bp|location=Sequence derived from alignment at sc0000023:961465..967261- (Clytia hemisphaerica)
AAGTTCTTTTGCAAAATGTGATAAGGTATGACAGCCAACTCTGTGCCTAA
AAAATCGCCATTTTGAATATGGAACACGCCGTATCTCTTTTCACGCGGCA
GAAGACAGTTCGAGGAAGCACAAAAGCACGGCGATCAAAGCCTCATCATG
TCTAATAGATATGCACGACCACCAAACACATCTTTATACATTAGAAACTT
AGGCACTAGCACAAGGTATGATATTTATTCCTTTTAGTAGAAATGTTCCT
GTTTACCAAAGGGCCCAACGAATAGGATAGGATTTGAACGCAAAATGAAT
GATCTTTGACAAGCGACTAGAATAAAGACAAAAATCAAGTGTTACAAGAT
AACCTCAGCTAAACGAATATATACAGGCAGTTGGTGTGGTAGACGTACCA
GAAAATCCGAACAAAATCTCAAAAACACCTGAGCGAGAAACTGAAAATGT
AGAAATCCAAAAATAGGCAATAAATAAGGGGCAACTTCCATATTCAAAGT
TGCCACACGTAGCAGGAAAAGACCATTACTTTTAAAACATACCTACCCAC
CTCCTTAACGGCCTTCATAATTTGACCAAAATCTTACCGAAGCTTCCATT
CCCGTTAAAATCAAAACAAACGGCCAAATTCCATCAATTTTTAAAGGGCT
TTTGTTTTTAAAACTCCTGAGGCAAAAAGTTTTATACTCTAAAACAACCC
CTAAAATTGCTCAGGGAAAGGATTTTGGATAGCGTGCAGTTTGCGTGAAT
GCATGAATGGGCATTTTCGGTTGCGTGAATGCGTGAAAATTGAAAAAAAA
AATATGCGAATGCATGAATTCAGAAAAAAATTGCGTGATTGCCGGAATTG
AATTCTTGAATCCGATAATTGAAGGAATACTCTACCCCATTGCTACATGC
CACACACATCCAGACGTCCGAGCTCGATAGGATCGATCATCGGAACGGCT
CGATGATGGATCGATATGTGATCGATGGATCCAGATAGGAGATCGATTGA
AGATCGATACTCAAGATTTTTTTAAGCTCGTGATTAGTTATCGATTATTT
ATCGATCTATCATAGATCTTTTATCGATCTTATCGACCCTATCGACTCAT
ACTCGATTTACAATCGATTAACGATCGATGATGAATCGATATACTTGCTT
TGAAATACTAGCTTGATAATGGATCAAGAAGGATCGATACTCAAGACTTT
TTAATGGCTGAATCTTCAATCGATCTCCTATCCGGATCGTTAAGTAATCC
ATCGATCACATATCGATCAGTCATCGAGCCGTTCCGATGATCGATCCGTC
ATCGAGCGCGGACGTCTGGACACATGTATACAATATCTTTGATTCACTCT
ACTTATAAGAGCACAGAAACATAGTTTAAAAATGTCCTCATGTTATTAGT
TATGTTCTTGTAAAAAGCTTTAGATCAGACTCAGAAAGAGAGAAAACTTC
GTGATTTGTTTACACGTAAATCGCGATAGTGTAAAGGGTATGAAAAAGTG
GTTTCACACAGTCTGAAGGAATGAAAATTCGTGAAAAGTATGCAAAACTA
TGTAATTATCCTCACGAAATATTGTCAAAATAATCTCCACCGTTGAGGTA
TGATACCATGATAACAAGATGTACCTGTGTACTTGTGTTTGAGCATCCGG
CTTCAGGTAAGGTTCTTGGTGAACCACGCCTCTGTGTGATCAATCTGTCG
AGAGAAAAAGAATCTCAGCAGATATTTTTCATGTCAATTANGTAGATTTT
CAAATTTTCAACTTTTGTACCTTTTCGGAAAGCTCTAAGGCTGTACTTTC
AGGATATAAAAAAGTTTCCATGGAGATATTTGTGAAATTGAGAAAATGAC
CGCCCAAGTTCAGCTTTTCACTGATTTTCATTTTTCCCTCGTTTCCAGGC
CCCCGTATATCAGAGTGAGAGCAGGTGAGAGGTCAAATAAAGATTGGAAA
TCCAATATTTGGATTCAGATTTTTTAGTTGTTTCAGGATATGTATGGTTG
TAAGTACTTTAAAGCAATATCTGAAGAGCTATCAGGCTTAGAAAGTACAG
GTAAAAACATGCGATTTAGGCAGATTTGAGGTTTTTTGCAGTTTCCCACC
CCCTAAAGCCCCTTCTGGGTGAGAAAGGAGTGTCTGTAAGCGCTGCACCT
TTTGGTGCATAGCTGATGTACTCCATACATAATAACACAATATACTGAAA
GAAACTTTCTCAGATAGCTCTACTTCAAGCAAAATCAAGCTAAAGTTTGA
GAAATAATGGTAGATTACCACCTTTTACCAGATTACCAGATTTTAATGGT
CTAAGTAGGGTTTTGGTGTCCCTCTATATTGATTTTGCTAAAAACTGATG
ATATTTTTTCTTAGTTTTCATCTTAATCAGATCAAAATTGGCCTAGTTAT
TAAAGTTTTAAATTCTGGTCAGTAAATTACTGGTCTGTAAATTACTGGTC
TGTAAATTACATTTTCGTAAATTGGGCATAACTTACCAACCGTTGTTGCT
AGAGAGCTGAAATTTTTTGTGTGTGATCCACCCAAGATATGTGACCTTGT
GTCAAAATTTCAGGAAGATTTGAAGACCCCCATGATCCCACTTTTTCTGA
TTCTTAGGTGCATCTGCTCTTAAGGTGTGTGTCCAGGGCTCTTTTGAATT
TATCGATAGAAATGTTTTTGAGGTTTCTGATGCTCTTTGGCATAGAATGA
ATGCGACTCTTTCAGTAAACTTATTACGATGGAGAGTCTCTCTCACACAA
ACTAAAGCCATTTTGAACACAGAAGTTTAAACGTATCAACAGATGTACCT
TTTGAACATTTTGTGTACAGAAAGCATTTTTGTTTCTTTGAGTGAACAAA
ATATTTTTTCTATAGGGAAAAATTTATAGAAAACTATTTTAGTGTTTTTA
TTTTTTCGAATCGAGAAAATTGAGTGTGTGAATTCACCACATTTACATAC
CCTGTATCCGCCCCTGGTCCATAAGAACATTATGGGAGTAATTAGATCAA
TCGGATGTAATGGAACGCCAAATTCCTAAATCCTGGGTTATATTCAATTA
CAATGTGATTGTGTTTGACAATTGAATTGCAAAAATGCAGCATAAAAATC
TTTTGAAAAGGGGTGTTTCATTCTATGGGTCTAAAATACTGGTTGCTAGA
TGCTTCTATTACTTTCATATTTTCACTTCTTTCAGGCCTGAAGATCTCCG
ACGCATCTTTGCTAAGTATGGACCTATTCGAGATGTTTATATTCCACTAG
ACTATTATTCCAGGGAACCAAGAGGGTTTGCTTATGTTCAATATCCTTTT
CGTAATATTGTAGTTATTCATAACAAATCTGGAGGTGTTGGAATCTCTTT
TCATTTGGTACTCAAACCTAATTTCTCTAACTAAGATATCCCTTGAGTGT
GAAAGTACAACTCAAATGTTTTTGAACTTGTAATTTCAGTAACTACACAG
ACAAGTCCTTGAGAGACCAAGCTTGACATATCTCAATTTCAAACAAGTTG
GTTCTTCAAAGAGAATGTTTTCAATTAAAAGATCTCAAGCCAGAGAAAGA
TATGTTCTTAAAGTTATGAAATACCAAGATACAGAAAAGACCCAAGGCTC
ATTTAAAGACAAGACCTAAGTTCAATAGCTGTTGATATCAAGTCAATATA
AGGCTTCCATTACAGACAACCTACAGATTCCTAATCCTTTAAAGTTCTCT
CACAGATTCAATCTTCATGTAAGTTTATTTTATTGTTTGTGCACAAAGTG
ATAGGTTTCTTAACTCAGCACTTTACATATGAAGATATTCGTGATGCAGA
AGATGCACTTCACTATGAGAATCATGTCCGTTGTCAAGGCCGAGAATTGG
ATGTCCAATTCGCAGAAGGAGATAGAAAGAGTGAGTGTTCTCTCCAGGTC
TTGTTTTTCCATTTCAAAGTCTATCTTTTTTTATCAAATTTGTTATGAAA
TTGAATTAAAAGAATTCAAACGGCTTATATCCTCTGTAATCTTAAGTGCA
ACAACGTGAATCCAGTGTCCTTGCTTATTCTTTGTAAATTCTCTTAGATG
GTTGGGTTTAACTTTTTATTTCAGCCCCCGGACAAATGAGAACTCGAGAT
GGTGACGATGACAGATATGGTGGTGGATATCGTGGCGGAGGGTAAGATGA
CTATGTTAAAGTACACAATCTGTTAGTTTGTGGGTGTTTCAAAGCATCCT
GTTTTCTTCAGTACAGCAGGTACATATTTCTAAGATACCATAGGAAAAAC
GAAAAGGTATATTTAGGGAGGGTTTAAGTAAATGGTAAATGTGCTGTCCA
GGGTCGAAAGGTCGAGTTATTATTTTGTGACACTTCATGGTTTGGGGGTT
TCAAGTGCTTAATTTTTATGAAAAACTAATATTCGAAAAAGGGTGAATTA
CAGACAATTTTCAACAAGGAGCCCGAAAGTTTAGGGTCTTACATCAATCT
GTTCAGTAATGATGCAATCTTTTGCTATTATGGAGTCATTTTGACAATGA
TGCTCAAGTATTCATACTGTCTGAGCTGAACTACACGAAAAGAACTATCT
TGTTCCAATGTTTGTACGTATTTCGACAGCTTGGACTTTCTGGAATAAAC
TTTCCACATAAAACTCTGTTTTTTTATCATTCAGGAGAAGAAGAAGTCGT
AGTCGATCACCACCCAGGTATGATGATTTTTAAGTGTTTATAGTTTTAAT
TCTACACAGAAATAGACAACTGTTATTGAGTAAGTGAAATTGTATAAAAA
TTCACGTAGGCTAGTGGCTTTCTTCGAGCGAGTGAAATCATTACTTTCCT
TCCAACAATGATGCACAAACTTTATTCAATAATGACTCTTTACGTGGATG
ATTGTTTAGTATTCATACTGTCTGAGTTGGATGTAGGAGAGAATACAATT
TGACTAATTTTCTCTTTGAAACATATCTACTACTACTACTCGGGTTAGGC
CTCAAAGTGTTCCAGAACCCTTAAACCAAGTAACAATTATATGAAAATAT
GATATACTATATCAAAGCATTAGTGTATCTTTTTTACTGTCTAGAAGACT
TAACTTAGACCTTACTTAGATTTACTTAGACCTTATAAATTCAAATTAAA
AACTATTTTTCGCTTTAGGAGGAGACGTAGAAGCCCATCCAGATCCCGTT
CACGCTCGAGATCACGCGGCCGTCGTCGAAGCCCATCTCGTAGTCCGCGT
CGATCAAAAAGTCGTTCGCGCTCCCGTTCGCCTCGTAAACGTTCTCGCTC
GCACAGTCCTCGAAAAGTATCCAGAAGCCGTAGCAAGAGTAGGAGCCGTA
GCCGCAGTCGTAGCCCGAGTAGAAGTAGAAGTCGTTCAAAGAGTAGATCA
CCTCGCAAATCTCGCTCGAGGTCACCATGAATTGGGAGGGAACAAGAATA
TAGAAGAGAGCGAAATATTTATAGACACTCTTTACAGCTGGGCAACGATA
TGTTTCGATCACCTATATTTACATCTTTTTGGAATGTAATAATCACGTGG
CAAATCTCTGAGTAAGGTGTTAAAAATCGAGTACAATCCCACATGATTTT
GTATATCTTTTCATTTTAAAACAGCGAGTAGAAATTGTTTTTGTGATGTA
GTGTAAATAAACAACATTTTTAACAAACTTTTTTAAGAACTTATTTTCAC
TGTACTTACCTGTCGAAGGTTTACATAAATTTTTTTTCTCTCTCTCACAG
ATCGTCTCGCACATGTCCCGAGATAAACATGATCTTGCTTTACCTGGCTA
TATCGGGCCCAATTTTCCTGGTGGATTTTAATCAGAAACAAAGTCTT

Coding sequence (CDS) from alignment at sc0000023:961465..967261-

>TCONS_00002901 ID=TCONS_00002901|Name=TCONS_00002901|organism=Clytia hemisphaerica|type=CDS|length=3834bp|location=Sequence derived from alignment at sc0000023:961465..967261- (Clytia hemisphaerica)
GAGGAGACGTAGAAGCCCATCCAGATCCCGTTCACGCTCGAGATCACGCG
GCCGTCGTCGAAGCCCATCTCGTAGTCCGCGTCGATCAAAAAGTCGTTCG
CGCTCCCGTTCGCCTCGTAAACGTTCTCGCTCGCACAGTCCTCGAAAAGT
ATCCAGAAGCCGTAGCAAGAGTAGGAGCCGTAGCCGCAGTCGTAGCCCGA
GTAGAAGTAGAAGTCGTTCAAAGAGTAGATCACCTCGCAAATCTCGCTCG
AGGTCACCATGAGAGAAGAAGAAGTCGTAGTCGATCACCACCCAGCCCCC
GGACAAATGAGAACTCGAGATGGTGACGATGACAGATATGGTGGTGGATA
TCGTGGCGGAGGATATGAAGATATTCGTGATGCAGAAGATGCACTTCACT
ATGAGAATCATGTCCGTTGTCAAGGCCGAGAATTGGATGTCCAATTCGCA
GAAGGAGATAGAAAGAGCCTGAAGATCTCCGACGCATCTTTGCTAAGTAT
GGACCTATTCGAGATGTTTATATTCCACTAGACTATTATTCCAGGGAACC
AAGAGGGTTTGCTTATGTTCAATGTCTAATAGATATGCACGACCACCAAA
CACATCTTTATACATTAGAAACTTAGGCACTAGCACAAGGAGGAGACGTA
GAAGCCCATCCAGATCCCGTTCACGCTCGAGATCACGCGGCCGTCGTCGA
AGCCCATCTCGTAGTCCGCGTCGATCAAAAAGTCGTTCGCGCTCCCGTTC
GCCTCGTAAACGTTCTCGCTCGCACAGTCCTCGAAAAGTATCCAGAAGCC
GTAGCAAGAGTAGGAGCCGTAGCCGCAGTCGTAGCCCGAGTAGAAGTAGA
AGTCGTTCAAAGAGTAGATCACCTCGCAAATCTCGCTCGAGGTCACCATG
AGAGAAGAAGAAGTCGTAGTCGATCACCACCCAGCCCCCGGACAAATGAG
AACTCGAGATGGTGACGATGACAGATATGGTGGTGGATATCGTGGCGGAG
GATATGAAGATATTCGTGATGCAGAAGATGCACTTCACTATGAGAATCAT
GTCCGTTGTCAAGGCCGAGAATTGGATGTCCAATTCGCAGAAGGAGATAG
AAAGAGCCTGAAGATCTCCGACGCATCTTTGCTAAGTATGGACCTATTCG
AGATGTTTATATTCCACTAGACTATTATTCCAGGGAACCAAGAGGGTTTG
CTTATGTTCAATGTCTAATAGATATGCACGACCACCAAACACATCTTTAT
ACATTAGAAACTTAGGCACTAGCACAAGGAGGAGACGTAGAAGCCCATCC
AGATCCCGTTCACGCTCGAGATCACGCGGCCGTCGTCGAAGCCCATCTCG
TAGTCCGCGTCGATCAAAAAGTCGTTCGCGCTCCCGTTCGCCTCGTAAAC
GTTCTCGCTCGCACAGTCCTCGAAAAGTATCCAGAAGCCGTAGCAAGAGT
AGGAGCCGTAGCCGCAGTCGTAGCCCGAGTAGAAGTAGAAGTCGTTCAAA
GAGTAGATCACCTCGCAAATCTCGCTCGAGGTCACCATGAGAGAAGAAGA
AGTCGTAGTCGATCACCACCCAGCCCCCGGACAAATGAGAACTCGAGATG
GTGACGATGACAGATATGGTGGTGGATATCGTGGCGGAGGATATGAAGAT
ATTCGTGATGCAGAAGATGCACTTCACTATGAGAATCATGTCCGTTGTCA
AGGCCGAGAATTGGATGTCCAATTCGCAGAAGGAGATAGAAAGAGCCTGA
AGATCTCCGACGCATCTTTGCTAAGTATGGACCTATTCGAGATGTTTATA
TTCCACTAGACTATTATTCCAGGGAACCAAGAGGGTTTGCTTATGTTCAA
TGTCTAATAGATATGCACGACCACCAAACACATCTTTATACATTAGAAAC
TTAGGCACTAGCACAAGGAGGAGACGTAGAAGCCCATCCAGATCCCGTTC
ACGCTCGAGATCACGCGGCCGTCGTCGAAGCCCATCTCGTAGTCCGCGTC
GATCAAAAAGTCGTTCGCGCTCCCGTTCGCCTCGTAAACGTTCTCGCTCG
CACAGTCCTCGAAAAGTATCCAGAAGCCGTAGCAAGAGTAGGAGCCGTAG
CCGCAGTCGTAGCCCGAGTAGAAGTAGAAGTCGTTCAAAGAGTAGATCAC
CTCGCAAATCTCGCTCGAGGTCACCATGAGAGAAGAAGAAGTCGTAGTCG
ATCACCACCCAGCCCCCGGACAAATGAGAACTCGAGATGGTGACGATGAC
AGATATGGTGGTGGATATCGTGGCGGAGGATATGAAGATATTCGTGATGC
AGAAGATGCACTTCACTATGAGAATCATGTCCGTTGTCAAGGCCGAGAAT
TGGATGTCCAATTCGCAGAAGGAGATAGAAAGAGCCTGAAGATCTCCGAC
GCATCTTTGCTAAGTATGGACCTATTCGAGATGTTTATATTCCACTAGAC
TATTATTCCAGGGAACCAAGAGGGTTTGCTTATGTTCAATGTCTAATAGA
TATGCACGACCACCAAACACATCTTTATACATTAGAAACTTAGGCACTAG
CACAAGGAGGAGACGTAGAAGCCCATCCAGATCCCGTTCACGCTCGAGAT
CACGCGGCCGTCGTCGAAGCCCATCTCGTAGTCCGCGTCGATCAAAAAGT
CGTTCGCGCTCCCGTTCGCCTCGTAAACGTTCTCGCTCGCACAGTCCTCG
AAAAGTATCCAGAAGCCGTAGCAAGAGTAGGAGCCGTAGCCGCAGTCGTA
GCCCGAGTAGAAGTAGAAGTCGTTCAAAGAGTAGATCACCTCGCAAATCT
CGCTCGAGGTCACCATGAGAGAAGAAGAAGTCGTAGTCGATCACCACCCA
GCCCCCGGACAAATGAGAACTCGAGATGGTGACGATGACAGATATGGTGG
TGGATATCGTGGCGGAGGATATGAAGATATTCGTGATGCAGAAGATGCAC
TTCACTATGAGAATCATGTCCGTTGTCAAGGCCGAGAATTGGATGTCCAA
TTCGCAGAAGGAGATAGAAAGAGCCTGAAGATCTCCGACGCATCTTTGCT
AAGTATGGACCTATTCGAGATGTTTATATTCCACTAGACTATTATTCCAG
GGAACCAAGAGGGTTTGCTTATGTTCAATGTCTAATAGATATGCACGACC
ACCAAACACATCTTTATACATTAGAAACTTAGGCACTAGCACAAGGAGGA
GACGTAGAAGCCCATCCAGATCCCGTTCACGCTCGAGATCACGCGGCCGT
CGTCGAAGCCCATCTCGTAGTCCGCGTCGATCAAAAAGTCGTTCGCGCTC
CCGTTCGCCTCGTAAACGTTCTCGCTCGCACAGTCCTCGAAAAGTATCCA
GAAGCCGTAGCAAGAGTAGGAGCCGTAGCCGCAGTCGTAGCCCGAGTAGA
AGTAGAAGTCGTTCAAAGAGTAGATCACCTCGCAAATCTCGCTCGAGGTC
ACCATGAGAGAAGAAGAAGTCGTAGTCGATCACCACCCAGCCCCCGGACA
AATGAGAACTCGAGATGGTGACGATGACAGATATGGTGGTGGATATCGTG
GCGGAGGATATGAAGATATTCGTGATGCAGAAGATGCACTTCACTATGAG
AATCATGTCCGTTGTCAAGGCCGAGAATTGGATGTCCAATTCGCAGAAGG
AGATAGAAAGAGCCTGAAGATCTCCGACGCATCTTTGCTAAGTATGGACC
TATTCGAGATGTTTATATTCCACTAGACTATTATTCCAGGGAACCAAGAG
GGTTTGCTTATGTTCAATGTCTAATAGATATGCACGACCACCAAACACAT
CTTTATACATTAGAAACTTAGGCACTAGCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001574XLOC_001574Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002901-proteinTCONS_00002901-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002901-exon-sc0000023-1575043694:967047..967261TCONS_00002901-exon-sc0000023-1575043694:967047..967261Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1575043694:963972..964076TCONS_00002901-exon-sc0000023-1575043694:963972..964076Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1575043694:963382..963485TCONS_00002901-exon-sc0000023-1575043694:963382..963485Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1575043694:963121..963187TCONS_00002901-exon-sc0000023-1575043694:963121..963187Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1575043694:962595..962627TCONS_00002901-exon-sc0000023-1575043694:962595..962627Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1575043694:961465..962143TCONS_00002901-exon-sc0000023-1575043694:961465..962143Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1510915933:967047..967261TCONS_00002901-exon-sc0000023-1510915933:967047..967261Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1510915933:963972..964076TCONS_00002901-exon-sc0000023-1510915933:963972..964076Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1510915933:963382..963485TCONS_00002901-exon-sc0000023-1510915933:963382..963485Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1510915933:963121..963187TCONS_00002901-exon-sc0000023-1510915933:963121..963187Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1510915933:962595..962627TCONS_00002901-exon-sc0000023-1510915933:962595..962627Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1510915933:961465..962143TCONS_00002901-exon-sc0000023-1510915933:961465..962143Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1491911889:967047..967261TCONS_00002901-exon-sc0000023-1491911889:967047..967261Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1491911889:963972..964076TCONS_00002901-exon-sc0000023-1491911889:963972..964076Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1491911889:963382..963485TCONS_00002901-exon-sc0000023-1491911889:963382..963485Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1491911889:963121..963187TCONS_00002901-exon-sc0000023-1491911889:963121..963187Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1491911889:962595..962627TCONS_00002901-exon-sc0000023-1491911889:962595..962627Clytia hemisphaericaexon
TCONS_00002901-exon-sc0000023-1491911889:961465..962143TCONS_00002901-exon-sc0000023-1491911889:961465..962143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:961465..967261 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
128.373	126.165	232.67	251.995	121.843	113.745	121.569	133.725	76.6762	77.487	97.8293	80.8882	94.6458	100.487	89.318	104.546	113.938	128.988	34.3067	34.3404	73.8388	71.8137	77.6282	70.3057	82.2783	87.0232	43.7685	34.8783	44.6954	46.6443
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00002901 vs. Swiss-Prot (Human)
Match: SRS12 (Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.056e-41
Identity = 66/97 (68.04%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:  154 NRYARPPNTSLYIRNLGTSTRPEDLRRIFAKYGPIRDVYIPLDYYSREPRGFAYVQYEDIRDAEDALHYENHVRCQGRELDVQFAEGDRKTPGQMRT 444
            +RY RPPNTSL+IRN+  +TRPEDLRR F +YGPI DVYIPLD+Y+R PRGFAYVQ+ED+RDAEDAL+  N     GR++++QFA+GDRKTPGQM++
Sbjct:    2 SRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKS 98
The following BLAST results are available for this feature:
BLAST of TCONS_00002901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRS121.056e-4168.04Serine/arginine-rich splicing factor 12 OS=Homo sa... [more]
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