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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002897 ID=TCONS_00002897|Name=TCONS_00002897|organism=Clytia hemisphaerica|type=transcript|length=3765bpRun BLAST on NCBI transcript from alignment at sc0000023:931280..957940- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002897 ID=TCONS_00002897|Name=TCONS_00002897|organism=Clytia hemisphaerica|type=transcript|length=26661bp|location=Sequence derived from alignment at sc0000023:931280..957940- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002897 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5) HSP 1 Score: 201.06 bits (510), Expect = 7.610e-52 Identity = 183/599 (30.55%), Postives = 247/599 (41.24%), Query Frame = 3
Query: 1233 CILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEICTREYR-PVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACPAVCTKPRKCRPEARCLVDKETCKESCTCR-RGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCS-LGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGK------------CPADP----CDNKCFQQIRPVCASNGKSYLNECFLEQDACKSKTEIEVFHRGLCQS--DYMKTIGT---------------NFKPVCGSDRKTYSNIAMLNAFSCLTGVKITKVSDGPCE----------------CDNQPC--FGTCILRKTSDGDQVCQQKCFLPPCVRPDPLNPPTPVCANDGMTYRRCPGFIVANCESDGKLKELFAGTC 2867
C + PVCGSD TYSN C L A C +I +S GPC +D CS N+ C GS C T C+C C VCGSDG Y EC+L + +C ++ KK DG C A+ R CR V+ T + R CP + PVCG DGVTY NDC++ + L+ G C G + C C + A C+ SR+ R RC C + C +PVC +G+TY ++C A CR Q I KH G C++ C V+C F + C K + C+C +AC ++ PVCG+DGVTY + C L+ C +I G C A+ C ++C +PVC S+G +Y +EC L AC + + V G C++ D + G PVCGSD TY + L +CL +I + GPCE C+ + C G + DG VC C P +PVC +DG+TY A CES L G C
Sbjct: 202 CPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCS----------------------------NVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCR------VNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQG--RDQCPE-PCRFNAVCL--SRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCA--VKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSC---------QSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 HSP 2 Score: 185.652 bits (470), Expect = 4.296e-47 Identity = 206/687 (29.99%), Postives = 283/687 (41.19%), Query Frame = 3
Query: 639 ERCVQAPCGCSFKCIPNNPPPVCQPCKTVKCKSGFVCVENTKSCTARCESSCKHCDSKSLCAGKNCG--ATEYCRVRCIGCQATCKAQSMCRRNPCSRAICGGRDP----------KCVPNFKTCTHKCLSCPKF-IACPFLLDPVCGSDGKTYDNECLLNAAACRSKRPLNKKHDGPXXXXXXXXXXXXFGARCVQDPRTCNTKCEC-PGACILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEI-CTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACPAVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCD--GDCKFSCATVKCAYGAKCVFNSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPADPC---------DNKCFQQI----------------------------RPVCASNGKSYLNECFLEQDACKSKTEIEVFHRGLCQSDYMKTIGTNFKPV 2537
E CV+ G F +P PP C+ + C G VC N + R CK S+ A CG A+ Y C +A C Q R SR CG RDP C + T CL CP P VCGSDG Y EC L AC + + KK DGPC + C +PRT + P +C PVCG DG TY N C +G + G + +V G C +DQC + PC N +C+ ++ +C C+ + C YRPVC DG+TY ++C +A C+ +I K G C +A P+ C +C A C V + + +C C + C + PVCG+DGVTY + C L+ C +++ +G CD G C+F GA C + RCVC C + +PVCGS+G TYP+EC+L+ C Q + G C TC + C F +VC QC C R PVCG+DGVTY + C L A C + +I + G C C D C Q++ PVC S+G +Y EC L++ C+S+ + V +G C+ G F P+
Sbjct: 150 EFCVEDKPGTHFTPVPPTPP---DACRGMLCGFGAVCEPNAEG-PGRASCVCKKSPCPSVVA-PVCGSDASTYSN-ECELQRAQCSQQRRIRL--LSRGPCGSRDPCSNVTCSFGSTCARSADGLTASCL-CPATCRGAP--EGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPS--RSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPE--------------------PCRF---NAVCL--------SRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQA-PSPCLG-VQCAFGATCAV--KNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRF---------GALCEAET----GRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCE----TCGDAVCAFGAVC------SAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACR-------GPTFAPL 758 HSP 3 Score: 155.221 bits (391), Expect = 8.865e-38 Identity = 173/615 (28.13%), Postives = 258/615 (41.95%), Query Frame = 3
Query: 585 PCIVCLAILCTPDTCSANERCVQAPCGCS----FKCIPNNPPPVCQPCKTVKCKSGFVCVENTKSCTARC--ESSCKHCDSKSLCAGKNCGATEYCRVRCIGCQATCKAQSMCRR-----NPCSRAICGGRDPK--CVPNFKTCTHKCLSCPKFIACPFLLDPVCGSDGKTYDNECLLNAAACRSKRPLNKKHDGPXXXXXXXXXXXXFGARCVQ---DPRTCNTKCECPGACILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEICTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACPAVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCK-----------ITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEI-FAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKC 2345
PC +A +C D + + C CS + + P PC V C G C + TA C ++C+ ++C C++ C + +++ ++ +PC A+ DP C N +T + L P+ +CP PVCG DG TY+N+C++ + L K G C+ + QC C+F A C+ PR + C GA ++PVC DG+TY + C+ A C+ I +GPC DQ C + C G+ C K C C + C+ Y PVCGSDG TY + CEL +C G I G C + +CR A C + ET + C C C + +PVCG+DG TY ++C+L + C + +L + G C+ +C CA+GA C +CVC PVCGS+G TY + C L A C Q +I + G C + + C C R D+ + C C+ +CQ + +PVCG+DGVTY +C L A C+S+ + + G C
Sbjct: 201 PCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRAC---ARQENVFKKFDGPCDPCQGAL---PDPSRSCRVNPRTRRPEMLLRPE--SCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGA----YRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPC---DQAPS------------------------PCLGVQCAFGATCAV--KNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCG--------QCRFGALC--EAETGR--CVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCE-----TCGDAVCAFGAVCSAG------QCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDE-DSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 The following BLAST results are available for this feature:
BLAST of TCONS_00002897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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