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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002895 ID=TCONS_00002895|Name=TCONS_00002895|organism=Clytia hemisphaerica|type=transcript|length=4088bpRun BLAST on NCBI transcript from alignment at sc0000023:931280..957887- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002895 ID=TCONS_00002895|Name=TCONS_00002895|organism=Clytia hemisphaerica|type=transcript|length=26608bp|location=Sequence derived from alignment at sc0000023:931280..957887- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002895 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5) HSP 1 Score: 173.326 bits (438), Expect = 3.183e-43 Identity = 201/669 (30.04%), Postives = 276/669 (41.26%), Query Frame = 1
Query: 901 ERCVQAPCGCSFKCIPNNPPPVCQPCKTVKCKSGFVCVENTKSCTARCESSCKHCDSKSLCAGKNCG--ATEYCRVRCIGCQATCKAQSMCRRNPCSRAICGGRDP----------KCVPNFKTCTHKCLSCPKF-IACPFLLDPVCGSDGKTYDNECLLNAAACRSKRPLNKKHDGPXXXXXXXXXXXXFGARCVQDPRTCNTKCEC-PGACILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEI-CTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKA-------------------------CDGPCTDDYTPVCGSDGKTYSNQCQLERAICXXXXXXXXXXXXECPKPCPAVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCK-----------ITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEI-FAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKC 2751
E CV+ G F +P PP C+ + C G VC N + R CK S+ A CG A+ Y C +A C Q R SR CG RDP C + T CL CP P VCGSDG Y EC L AC + + KK DGPC + C +PRT + P +C PVCG DG TY N C +G + G + +V G C +DQC + PC N +C+ ++ +C C+ + C YRPVC DG+TY ++C +A C+ +I K G C +A C C+ Y PVCGSDG TY + C+LE C G +I G C + C +CR A C + ET + C C C + +PVCG+DG TY ++C+L + C + +L + G C+ +C CA+GA C +CVC PVCGS+G TY + C L A C Q +I + G C + + C C R D+ + C C+ +CQ + +PVCG+DGVTY +C L A C+S+ + + G C
Sbjct: 150 EFCVEDKPGTHFTPVPPTPP---DACRGMLCGFGAVCEPNAEG-PGRASCVCKKSPCPSVVA-PVCGSDASTYSN-ECELQRAQCSQQRRIRL--LSRGPCGSRDPCSNVTCSFGSTCARSADGLTASCL-CPATCRGAP--EGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPS--RSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPE--------------------PCRF---NAVCLS--------RRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDR-----CG---QCRFGALC--EAETGR--CVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCE-----TCGDAVCAFGAVCSAG------QCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDE-DSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 HSP 2 Score: 172.17 bits (435), Expect = 5.867e-43 Identity = 157/521 (30.13%), Postives = 214/521 (41.07%), Query Frame = 1
Query: 1495 CILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEICTREYR-PVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACDGPCTD-------------------------DYTPVCGSDGKTYSNQCQLERA------ICXXXXXXXXXXXXECPKPCP--AVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPADPCDNK--CFQQI----------------RPVCASNGKSYLNECFLEQDACKSKTEIEVFHRGLCQ 2901
C + PVCGSD TYSN C L A C +I +S GPC +D CS N+ C GS C T C+C C VCGSDG Y EC+L + +C ++ KK DG C C G D PVCG DG TY N C + R+ + + + +CP+PC AVC R+ RP RC D+ TC + RPVC DG TY +DC + A C + + KH+G CD C V+CA+GA C + Q C C C + PVCGS+G TY + C L C +I G C++C +C F ++C + +C C C + PVCG+DG TY ++C L + C + + S G C + C + F + PVC S+G +Y + C L + AC +T+IE G C+
Sbjct: 202 CPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCS----------------------------NVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPC-DPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLS-RRGRP--RCSCDRVTCDGA----------YRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCD-QAPSPCLGVQCAFGATCAVKNGQA--ACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCG------QCRFGALCEAETG----RCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPC--ETCGDAVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCE 665 HSP 3 Score: 151.754 bits (382), Expect = 1.072e-36 Identity = 166/585 (28.38%), Postives = 232/585 (39.66%), Query Frame = 1
Query: 1942 PCTDDYTPVCGSDGKTYSNQCQLERAICXXXXXXXXXXXXECPK--PCPAV-CTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCS-LGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRA-CQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPADP------------------------CDNKCFQQIRPVCASNGKSYLNECFLEQDACKSKTEIEVFHRG------------LCQSDYMKTI-----GTNFKPVCGSDRKTYSNIAMLNAFSCLTGVKITKVSDGPCECDNQPCFGTCILRKTSDGDQVCQ-------QKCFLPPCVRPDPLNPPTPVCANDGMTYRRCPGFIVANCESDGKLKELFAG------------------TCPPNICKTCKDVF--------------------SPVCGSDGQFYTSRCALERTNCLEKKSVTIVNGGLCKG 3423
PC PVCGSD TYSN+C+L+RA C +I S G C PC V C+ C A L C +C RG P+ VCG+DG Y +C L C + + K G CD C C N R R + CP PVCG +G TY N+C++ + + K G+C + + C C F +VC+ + + +C C+R C + PVC DG TYD+ C A C+ + I K G C P C C PVC S+G +Y + C LE AC EI+V +G LC+++ + + +PVCGSD TY + ML+ +C + + S GPCE TC GD VC +C P C P PP PVC +DG+TY A C +++E AG C +C+ ++ SPVCGSDG Y++ C L++ C ++ + + G C+G
Sbjct: 201 PCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVTCSFGSTCARSADGLTASCLCPATC---RGAPEGT--VCGSDGADYPGECQLLRRACARQENVFKKFDGPCD-----PCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQC-QGRDQCPEP-CRFNAVCLS--RRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCE--------TC-------GDAVCAFGAVCSAGQCVCPRCEHP----PPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRG 752 HSP 4 Score: 110.153 bits (274), Expect = 5.960e-24 Identity = 125/463 (27.00%), Postives = 174/463 (37.58%), Query Frame = 1
Query: 2317 SCATVKCAYGAKCVFNSRQ-CRHRCVCSLG-CPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAP---VCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPADPCDNKCFQQIRPVCASNGKSYLNECFLEQDACKSKTEIEVFHRGLCQSDYMKTIGTNFKPVCGSDRKTYSNIAMLNAFSCLTGVKITKVSDGPCECDNQ---PCF--GTCILRKTSDG---DQVCQQKCFLPPCVRPDPLNPPTPVCANDGMTYRRCPGFIVANCESDGKLKELFAGTC--PPNIC-----------------------KTCKDVFSPVCGSDGQFYTSRCALERTNCLEKKSVTIVN------------GGLCKGSQ---------LLIGNEDIPGCGTDGITYTNKAWITLAGCTSKV 3528
+C + C +GA C N+ R CVC CP ++ PVCGS+ TY NEC L A C Q +I G C + C+NV C F S C C C C+ AP VCG+DG Y +C L C + + KK DG C DPC R C N ++ E L ++C ++ PVCG D TY N ++ G+ + KV G C+ +Q PC C+ R+ D+V + PVCA DG TY A C + G C P+ C + C ++ PVCGSDG Y S C LE T C + + + G LC+ + + P CG+DG TY ++ + + CT ++
Sbjct: 171 ACRGMLCGFGAVCEPNAEGPGRASCVCKKSPCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGS-RDPCSNVTCSFGSTCARSADGLTASCLCPATCRG--APEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPC--DPCQGALPDPSR-SCRVNPRTRRPEMLLRPESCPARQ----------------------APVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAY-------------RPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQ---PVCGSDGHTYPSECMLHVHACTHQI 589 The following BLAST results are available for this feature:
BLAST of TCONS_00002895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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