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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002894 ID=TCONS_00002894|Name=TCONS_00002894|organism=Clytia hemisphaerica|type=transcript|length=3944bpRun BLAST on NCBI transcript from alignment at sc0000023:931280..957887- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002894 ID=TCONS_00002894|Name=TCONS_00002894|organism=Clytia hemisphaerica|type=transcript|length=26608bp|location=Sequence derived from alignment at sc0000023:931280..957887- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002894 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5) HSP 1 Score: 204.142 bits (518), Expect = 8.723e-53 Identity = 183/599 (30.55%), Postives = 247/599 (41.24%), Query Frame = 1
Query: 1495 CILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEICTREYR-PVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACPAVCTKPRKCRPEARCLVDKETCKESCTCR-RGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCS-LGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGK------------CPADP----CDNKCFQQIRPVCASNGKSYLNECFLEQDACKSKTEIEVFHRGLCQS--DYMKTIGT---------------NFKPVCGSDRKTYSNIAMLNAFSCLTGVKITKVSDGPCE----------------CDNQPC--FGTCILRKTSDGDQVCQQKCFLPPCVRPDPLNPPTPVCANDGMTYRRCPGFIVANCESDGKLKELFAGTC 3129
C + PVCGSD TYSN C L A C +I +S GPC +D CS N+ C GS C T C+C C VCGSDG Y EC+L + +C ++ KK DG C A+ R CR V+ T + R CP + PVCG DGVTY NDC++ + L+ G C G + C C + A C+ SR+ R RC C + C +PVC +G+TY ++C A CR Q I KH G C++ C V+C F + C K + C+C +AC ++ PVCG+DGVTY + C L+ C +I G C A+ C ++C +PVC S+G +Y +EC L AC + + V G C++ D + G PVCGSD TY + L +CL +I + GPCE C+ + C G + DG VC C P +PVC +DG+TY A CES L G C
Sbjct: 202 CPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCS----------------------------NVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCR------VNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQG--RDQCPE-PCRFNAVCL--SRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCA--VKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSC---------QSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 HSP 2 Score: 189.119 bits (479), Expect = 3.633e-48 Identity = 206/687 (29.99%), Postives = 283/687 (41.19%), Query Frame = 1
Query: 901 ERCVQAPCGCSFKCIPNNPPPVCQPCKTVKCKSGFVCVENTKSCTARCESSCKHCDSKSLCAGKNCG--ATEYCRVRCIGCQATCKAQSMCRRNPCSRAICGGRDP----------KCVPNFKTCTHKCLSCPKF-IACPFLLDPVCGSDGKTYDNECLLNAAACRSKRPLNKKHDGPXXXXXXXXXXXXFGARCVQDPRTCNTKCEC-PGACILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEI-CTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACPAVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCD--GDCKFSCATVKCAYGAKCVFNSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPADPC---------DNKCFQQI----------------------------RPVCASNGKSYLNECFLEQDACKSKTEIEVFHRGLCQSDYMKTIGTNFKPV 2799
E CV+ G F +P PP C+ + C G VC N + R CK S+ A CG A+ Y C +A C Q R SR CG RDP C + T CL CP P VCGSDG Y EC L AC + + KK DGPC + C +PRT + P +C PVCG DG TY N C +G + G + +V G C +DQC + PC N +C+ ++ +C C+ + C YRPVC DG+TY ++C +A C+ +I K G C +A P+ C +C A C V + + +C C + C + PVCG+DGVTY + C L+ C +++ +G CD G C+F GA C + RCVC C + +PVCGS+G TYP+EC+L+ C Q + G C TC + C F +VC QC C R PVCG+DGVTY + C L A C + +I + G C C D C Q++ PVC S+G +Y EC L++ C+S+ + V +G C+ G F P+
Sbjct: 150 EFCVEDKPGTHFTPVPPTPP---DACRGMLCGFGAVCEPNAEG-PGRASCVCKKSPCPSVVA-PVCGSDASTYSN-ECELQRAQCSQQRRIRL--LSRGPCGSRDPCSNVTCSFGSTCARSADGLTASCL-CPATCRGAP--EGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPS--RSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPE--------------------PCRF---NAVCLS--------RRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQA-PSPCLG-VQCAFGATCAV--KNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRF---------GALCEAET----GRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCE----TCGDAVCAFGAVC------SAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACR-------GPTFAPL 758 HSP 3 Score: 162.155 bits (409), Expect = 8.069e-40 Identity = 173/615 (28.13%), Postives = 242/615 (39.35%), Query Frame = 1
Query: 1714 SCANILCIIGSRCEHDPKK-CTTKCVCNEI-CTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACP---AVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCS-LGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRA-CQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPADP------------------------CDNKCFQQIRPVCASNGKSYLNECFLEQDACKSKTEIEVFHRG------------LCQSDYMKTI-----GTNFKPVCGSDRKTYSNIAMLNAFSCLTGVKITKVSDGPCECDNQPCFGTCILRKTSDGDQVCQ-------QKCFLPPCVRPDPLNPPTPVCANDGMTYRRCPGFIVANCESDGKLKELFAG------------------TCPPNICKTCKDVF--------------------SPVCGSDGQFYTSRCALERTNCLEKKSVTIVNGGLCKG 3279
+C +LC G+ CE + + CVC + C PVCGSD TYSNECEL +A C I S G C P C+ C A L C +C RG P+ VCG+DG Y +C L C + + K G CD C C N R R + CP PVCG +G TY N+C++ + + K G+C + + C C F +VC+ + + +C C+R C + PVC DG TYD+ C A C+ + I K G C P C C PVC S+G +Y + C LE AC EI+V +G LC+++ + + +PVCGSD TY + ML+ +C + + S GPCE TC GD VC +C P C P PP PVC +DG+TY A C +++E AG C +C+ ++ SPVCGSDG Y++ C L++ C ++ + + G C+G
Sbjct: 171 ACRGMLCGFGAVCEPNAEGPGRASCVCKKSPCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVTCSFGSTCARSADGLTASCLCPATC---RGAPEGT--VCGSDGADYPGECQLLRRACARQENVFKKFDGPCD-----PCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQC-QGRDQCPEP-CRFNAVCLS--RRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCE--------TC-------GDAVCAFGAVCSAGQCVCPRCEHP----PPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRG 752 HSP 4 Score: 158.303 bits (399), Expect = 1.065e-38 Identity = 172/613 (28.06%), Postives = 257/613 (41.92%), Query Frame = 1
Query: 847 PCIVCLAILCTPDTCSANERCVQAPCGCS----FKCIPNNPPPVCQPCKTVKCKSGFVCVENTKSCTARC--ESSCKHCDSKSLCAGKNCGATEYCRVRCIGCQATCKAQSMCRR-----NPCSRAICGGRDPK--CVPNFKTCTHKCLSCPKFIACPFLLDPVCGSDGKTYDNECLLNAAACRSKRPLNKKHDGPXXXXXXXXXXXXFGARCVQDPRTCNTKCECPGA-CILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEICTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACPAVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCK-----------ITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEI-FAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKC 2607
PC +A +C D + + C CS + + P PC V C G C + TA C ++C+ ++C C++ C + +++ ++ +PC A+ DP C N +T + L P+ +CP PVCG DG TY+N+C++ + L K G C+ + QC C+F A C+ R +C C C ++PVC DG+TY + C+ A C+ I +GPC DQ C + C G+ C K C C + C+ Y PVCGSDG TY + CEL +C G I G C + +CR A C + ET + C C C + +PVCG+DG TY ++C+L + C + +L + G C+ +C CA+GA C +CVC PVCGS+G TY + C L A C Q +I + G C + + C C R D+ + C C+ +CQ + +PVCG+DGVTY +C L A C+S+ + + G C
Sbjct: 201 PCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRAC---ARQENVFKKFDGPCDPCQGAL---PDPSRSCRVNPRTRRPEMLLRPE--SCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLS--RRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPC---DQAPS------------------------PCLGVQCAFGATCAV--KNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCG--------QCRFGALC--EAETGR--CVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCE-----TCGDAVCAFGAVCSAG------QCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDE-DSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 HSP 5 Score: 110.538 bits (275), Expect = 4.052e-24 Identity = 125/463 (27.00%), Postives = 174/463 (37.58%), Query Frame = 1
Query: 2173 SCATVKCAYGAKCVFNSRQ-CRHRCVCSLG-CPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAP---VCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPADPCDNKCFQQIRPVCASNGKSYLNECFLEQDACKSKTEIEVFHRGLCQSDYMKTIGTNFKPVCGSDRKTYSNIAMLNAFSCLTGVKITKVSDGPCECDNQ---PCF--GTCILRKTSDG---DQVCQQKCFLPPCVRPDPLNPPTPVCANDGMTYRRCPGFIVANCESDGKLKELFAGTC--PPNIC-----------------------KTCKDVFSPVCGSDGQFYTSRCALERTNCLEKKSVTIVN------------GGLCKGSQ---------LLIGNEDIPGCGTDGITYTNKAWITLAGCTSKV 3384
+C + C +GA C N+ R CVC CP ++ PVCGS+ TY NEC L A C Q +I G C + C+NV C F S C C C C+ AP VCG+DG Y +C L C + + KK DG C DPC R C N ++ E L ++C ++ PVCG D TY N ++ G+ + KV G C+ +Q PC C+ R+ D+V + PVCA DG TY A C + G C P+ C + C ++ PVCGSDG Y S C LE T C + + + G LC+ + + P CG+DG TY ++ + + CT ++
Sbjct: 171 ACRGMLCGFGAVCEPNAEGPGRASCVCKKSPCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGS-RDPCSNVTCSFGSTCARSADGLTASCLCPATCRG--APEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPC--DPCQGALPDPSR-SCRVNPRTRRPEMLLRPESCPARQ----------------------APVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAY-------------RPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQ---PVCGSDGHTYPSECMLHVHACTHQI 589 HSP 6 Score: 101.293 bits (251), Expect = 2.976e-21 Identity = 158/599 (26.38%), Postives = 213/599 (35.56%), Query Frame = 1
Query: 973 PCKTVKCKSGFVCVENTKSCTARCESSCKHCDSKSLCAGKNCGATEYCRVRCIGCQATCKAQSMCRRNPCSR-------AICGGRDPKCVPNFKTCTHKCLSCPKFIACPFLLDPVCGSDGKTYDNECLLNAAACRSKRPLNKKHDGPXXXXXXXXXXXXFGARCVQDPRTCNTKCECPGACILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKD------------QCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEICTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKC--PKACPAVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPV---CGTDGVTYANDCLLKIARCE---SKGTLK--------LKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPADPCDNKCFQQIRPVCAS 2664
PC V+C G C C +C +C C + C + Q + R+ PC R A+C +CV C +C++ L PVCGSDG TY +EC+L+ AC + L+ GPC+ FGA C C +CE P PVCGSDG TY +AC L A C +I + GPC + C + C + R W+ + C C SC ++ GS PVCGSDG TYS ECEL KA C+S + + G C P P P C C+++ T RG P C G +Y C +C G L+ RG D + C C + Q C C P + P CG P+ L A C + TCA +RC F + CV++ + C + VCG+DGVTY N+C L C+ +I+ +S G PC P AS
Sbjct: 467 PCLGVQCAFGATCAVKNGQAACECLQACSSL-YDPVCGSDGVTYGSACELEATACTLGREIQ-VARKGPCDRCGQCRFGALCEAETGRCV-----CPSECVA---------LAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCA--FGAVCSAGQCVC-PRCEHPPP-----GPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELC-RQRGGIWDEDSEDGPCVCDFSCQSV---PGS------------------------PVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPTFAPLPPVAPLHC-----AQTPYGCCQDNITAARGVGLAGCPSACQCNPHG-SYGGTCDPATGQCSCRPGVGGLRCDRCEPGFWNFRGIVT-DGRSGCTPCSCDPQGAVRDDCEQMTGLCSCK---PGVAGPKCGQ----CPDGRALGPAGCEADAS-----------APATCAEMRCEFGARCVEESGSAHCVCPMLTCPEANATKVCGSDGVTYGNECQLKTIACRQGLQISIQSLG-----PCQEAVAPSTHPTSAS 983 The following BLAST results are available for this feature:
BLAST of TCONS_00002894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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