TCONS_00002885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002885
Unique NameTCONS_00002885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002885 ID=TCONS_00002885|Name=TCONS_00002885|organism=Clytia hemisphaerica|type=transcript|length=1593bp
CTGTGACCCAGTGGCATTTTTTCTCAAGAGTTTAGTGAATTTTACAATTG
AGACGTAAACTCTAGTGTATTTTCTCCCAGTCAATTCcgaccaatttttc
cagtaagAAGGGATTCCGTCCGCCTGTGATATGGGGGTGCTAAACATAAA
CGACCCCCATTACTTTACagcttaatatgttcttataaactatgTTCTTA
ATCCTAAAAGCTCACGGCTACTTGAATTAAGAATTTGATCGACGGTGTTT
GATACATAAACATGAACTTTGTCATAATACAAGATTATGTAACTTCAAAT
GTAGTGTataaaagtcaggtttttgtaGACTGAAAGAACAGTGAAATCGC
ACATATTCAATAACGTCGAAAGAAGTTGAAAGAGTTTTCTATTGTTGGAA
AAGCAGAACATTGGGATATAAATCAAAAACAAGAAGATGAGATTGATAGC
ATTCATCGTGGTTTTGTGTTTGTGTTCAACACGGTTAGAAGCTAAaccaa
atttcttcaaaaacatgttaGGCAAACTCCATAACGCAGTGAAAGAAGTA
GTTGGAGACAAATCCGAACGTGAAGATGGTAAACCATGGTTTTGTCATGA
TTTGGACTGTCCAGAATTCAAAGTTGTCCGAAAGATCACAGTCAACGATG
ATCTGGAAATTGAAGAGAGATGCTATCCTGAAACAACTTGGGTTCAAACA
ACAATGAATGGTGACCGCCAAAATTTAAAATACTACACCATGTTCCAAAA
ACTTTTCGCCTACATTCAAAAAGACGAAAACGTAAAGAAAGAGAAAATCG
AAATGACTGCACCAGTCCTTGTCTCCGTCACTGACGTAAACGACGAAACA
GTTAACGCCCAAATGGGATTCTTTGTACCACCCGCTGAAGAATCAACCGC
CCCAGCACCCACCCGTAAAGATGTCAAAATCGGTAGTAAAACTCCAATGT
GCGTTTATGTTTACTCCTACGGTGGATGGCAAATGAATTTGGACAACAAA
TTCTGGAAAAAtgtcaatattttgaaagaCGGATTAAGAGAGGCTGGTGT
TACGGACTTTGATGAGAGCGCCGGAGCTATGTTCGCTGGGTATGATAGCC
CATTCAGAGTTTTTAACCGTCACAATGAAGTAATGGTATTGAAGAAACCA
AGTGAAGAAATCAAAGTTGAAAACAAATCTTCGTAAACTTTCTTAtttag
attttaaatttaagatttacTCTTTGGGTTGATATGATGTGTTATTTCTG
ACTACGTTATATGCTCCACACTCTAGCATTGACAGAGAAAATCGGTTTTC
CTTTGACAAGACACTATTTAGATCTCTATAAGAGCTTGACGAATATTCCT
GTTTTATGAATGTTTTCCTGAATATTttcgtttttaatttttgtatatta
tcgagaacttttattttgtaaaaaaagacaGAATATAAACCAACTCTCTT
TCATCGTTCGATCACACCCTTTTATTTAATCTGAGGTGAATGGGAGTCTA
AACTAAAGATAGACAACTTCGAAACTAATCCTTTCATGGGACATAGGGTC
ATCAACGTCATTTATGATGACGTCTAGTAAAACCTACCataag
Run BLAST on NCBI

transcript from alignment at sc0000023:710483..713033-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002885 ID=TCONS_00002885|Name=TCONS_00002885|organism=Clytia hemisphaerica|type=transcript|length=2551bp|location=Sequence derived from alignment at sc0000023:710483..713033- (Clytia hemisphaerica)
CTGTGACCCAGTGGCATTTTTTCTCAAGAGTTTAGTGAATTTTACAATTG
AGACGTAAACTCTAGTGTATTTTCTCCCAGTCAATTCCGACCAATTTTTC
CAGTAAGAAGGGATTCCGTCCGCCTGTGATATGGGGGTGCTAAACATAAA
CGACCCCCATTACTTTACAGCTTAATATGTTCTTATAAACTATGTTCTTA
ATCCTAAAAGCTCACGGCTACTTGAATTAAGAATTTGATCGACGGTGTTT
GATACATAAACATGAACTTTGTCATAATACAAGATTATGTAACTTCAAAT
GTAGTGTATAAAAGTCAGGTTTTTGTAGACTGAAAGAACAGTGAAATCGC
ACATATTCAATAACGTCGAAAGAAGTTGAAAGAGTTTTCTATTGTTGGAA
AAGGTAAGGCAAAATCGATTCTTATATTGGATTGAATGAGGTAGACTTTT
AGAACGGTTTTTGGCAATGGGGATAGATATTACCAAAGATATTACAAGGT
CCTACATGAACCCTGCGCCCTGCAGACCTTCAGTTCATGCAACCAAATTT
ACGCAATTTCTGTTCACACAAAGTTTTCCAATTCACGCATTCACGCAGCT
TTTTTTTAATTTTCACGCATTCATACAAGTGAAAAGCCCTTTCACGCAAT
AAACCGTTGGAGGGAGGGGGCCCTACATCACAAGCCTGGTTAGATATTGG
ACTAAATATCCGCCGTTAAAATGTGACTGTTATCTCCTTATGGAAGCAAG
ATGCCCATAGAACGTGTATCTATCAACAACCCTTGCTTTTGAAGCGTGAA
TGACTTATAAATTATGTAATACCTAAATTTTTATGTAAGTTATGCTTTTA
ATCATCAAATCATAATAATTACATAAAAATTGTCTTTCCAGCAGAACATT
GGGATATAAATCAAAAACAAGAAGATGAGATTGATAGCATTCATCGTGGT
TTTGTGTTTGTGTTCAACACGGTTAGAAGCTAAACCAAATTTCTTCAAAA
ACATGTTAGGCAAACTCCATAACGCAGTGAAAGAAGTAGTTGGAGACAAA
TCCGAACGTGAAGATGGTAAACCATGGTTTTGTCATGATTTGGACTGTCC
AGAATTCAAAGTTGTCCGAAAGATCACAGTCAACGATGATCTGGAAATTG
AAGAGAGATGCTATCCTGAAACAACTTGGGTTCAAACAACAATGAATGGT
GACCGCCAAAATTTAAGTAAGTTTTGCATTAGTAGTCATTCTTTTTTTTG
ACAAGTGCGGTTGAAGGGTTGAATACAACCTAAGGGAACACCCCTGTCTC
CCACTCCAGTGGGACTTCTTCCATAGTGGGGAGGAGTGCATTTTATTTCT
ATTCCATTTCATTTGGGGATGAAAACAAAGTCAATTTTTCGTGTGGTTGT
AATTTTATTTTTCTCACCAAGGGGACAAAGTTTGACCAAATTTTCCAATG
GATAGGGCGCTCGGGTAACTTAATGCATGTCCCAGAATTGCATTAATTTT
TACGCCCCAGTTCCAGTCCCTAAACCATAACAAACTATAGTTTGTTATGG
TTTAGGGACTGGAACTGGGGCGGAAAAATTAATGCAATTCTGGGACATGC
ATTAAGTTACCCGAGGACCAACTGGTCTGTGACAAAGGGGTGTAAGGGTT
ATTAAGTACTAAAAAGTTTTCATTCTTTCCTCTCAGAATACTACACCATG
TTCCAAAAACTTTTCGCCTACATTCAAAAAGACGAAAACGTAAAGAAAGA
GAAAATCGAAATGACTGCACCAGTCCTTGTCTCCGTCACTGACGTAAACG
ACGAAACAGTTAACGCCCAAATGGGATTCTTTGTACCACCCGCTGAAGAA
TCAACCGCCCCAGCACCCACCCGTAAAGATGTCAAAATCGGTAGTAAAAC
TCCAATGTGCGTTTATGTTTACTCCTACGGTGGATGGCAAATGAATTTGG
ACAACAAATTCTGGAAAAATGTCAATATTTTGAAAGACGGATTAAGAGAG
GCTGGTGTTACGGACTTTGATGAGAGCGCCGGAGCTATGTTCGCTGGGTA
TGATAGCCCATTCAGAGTTTTTAACCGTCACAATGAAGTAATGGTATTGA
AGAAACCAAGTGAAGAAATCAAAGTTGAAAACAAATCTTCGTAAACTTTC
TTATTTAGATTTTAAATTTAAGATTTACTCTTTGGGTTGATATGATGTGT
TATTTCTGACTACGTTATATGCTCCACACTCTAGCATTGACAGAGAAAAT
CGGTTTTCCTTTGACAAGACACTATTTAGATCTCTATAAGAGCTTGACGA
ATATTCCTGTTTTATGAATGTTTTCCTGAATATTTTCGTTTTTAATTTTT
GTATATTATCGAGAACTTTTATTTTGTAAAAAAAGACAGAATATAAACCA
ACTCTCTTTCATCGTTCGATCACACCCTTTTATTTAATCTGAGGTGAATG
GGAGTCTAAACTAAAGATAGACAACTTCGAAACTAATCCTTTCATGGGAC
ATAGGGTCATCAACGTCATTTATGATGACGTCTAGTAAAACCTACCATAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001567XLOC_001567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002885-exon-sc0000023-1575043694:712631..713033TCONS_00002885-exon-sc0000023-1575043694:712631..713033Clytia hemisphaericaexon
TCONS_00002885-exon-sc0000023-1575043694:711818..712142TCONS_00002885-exon-sc0000023-1575043694:711818..712142Clytia hemisphaericaexon
TCONS_00002885-exon-sc0000023-1575043694:710483..711347TCONS_00002885-exon-sc0000023-1575043694:710483..711347Clytia hemisphaericaexon
TCONS_00002885-exon-sc0000023-1510915933:712631..713033TCONS_00002885-exon-sc0000023-1510915933:712631..713033Clytia hemisphaericaexon
TCONS_00002885-exon-sc0000023-1510915933:711818..712142TCONS_00002885-exon-sc0000023-1510915933:711818..712142Clytia hemisphaericaexon
TCONS_00002885-exon-sc0000023-1510915933:710483..711347TCONS_00002885-exon-sc0000023-1510915933:710483..711347Clytia hemisphaericaexon
TCONS_00002885-exon-sc0000023-1491911889:712631..713033TCONS_00002885-exon-sc0000023-1491911889:712631..713033Clytia hemisphaericaexon
TCONS_00002885-exon-sc0000023-1491911889:711818..712142TCONS_00002885-exon-sc0000023-1491911889:711818..712142Clytia hemisphaericaexon
TCONS_00002885-exon-sc0000023-1491911889:710483..711347TCONS_00002885-exon-sc0000023-1491911889:710483..711347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:710483..713033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.31257	0.262574	0.181838	6.54886e-06	0.176924	0.102838	0.994133	0.738938	17.1366	28.6062	106.096	37.3553	18.9056	21.568	0.154865	1.51688	0.445586	0.00331055	3.03734	0.914001	0.0740475	1.74834	4.12556	0.588302	1.2983	8.40945	5.5492	5.80031	29.4326	27.1311
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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