TCONS_00002883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002883
Unique NameTCONS_00002883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002883 ID=TCONS_00002883|Name=TCONS_00002883|organism=Clytia hemisphaerica|type=transcript|length=2057bp
ATAAGAATAGTACAGAATAAAGAAGCAAAAAGGGGAGAAAGAACAGTGGC
TGAAATTAAATatgttatcaaaacaaaaaagttcttGAGTAAAGAGAAGA
AGGactacattttcaaaaagtatatgaaaaactttggaaaatatATAAGA
TAGGTGAAAAAAGGATAGAAAAAATATATGCCATTATAAAACTTCTCTAA
TTAATATaaggaatttgaaataaataacATTAGCTTGAATGTGATAATCT
GCAGCGTTACGGGAGCGTTGCttagaaattttggaaaaaacaacataaat
tgCAAACACACGAATAAAATTTTATACCGATAGGACTTTGTCAATatgCC
TCGACTTGGAAGACGCGAAAGTGAAGatATGCAGAGACTGTTTGATACAT
TCGATTGTGATATGAATGGAAGGATTTCAAGAAGAGAATTGAAAGCTGTC
TTCAAAGCTTTGAATGTTACCATCAATGATGAAAATTTGAGGTCTATGTT
TCACTCCGCTGATAAAGACAAAAGTGGTTTTATTGAATTTGGTGAATTTG
TAAGAGTATTTAGTCCACCGAGTCAAGATGAGCTTTTAAATGCATTTAAA
CGATTCGATAAGAATGGGGATGGTTTTCTGACACCTGATGAGGTGAAAGA
AGTATTGAGAGATGCTAATCAGCCGGCAACCGATCGGAATGTAACAGAAA
TGATTGAATCTGTTGATTCGAATGGTGATGGAAAGATTAACTATAAAGAA
TTTCTCACGATGTTAAAATCTTAGTGTAGTGGCTACAACATTTGAAAgat
tcaaaatattatgattagaatttttgtaaatattgtcaaaatgaaataaa
ttatagcaaataaaaagaactttttgaacagAATTTTAAAACTTATCCTC
GTTAAGAAGGAGTTCTAATCTAAGTTACGTGATATCTCCTTCCTTTAGAG
CAGCCATGTGATTGCTCTTAAATCTATCCATGTCGAAATGTGGCGACTTA
TACATATAGCCCAAAAATAATAGAATAATTCGAATAATTATCAGGACATC
TATCGCCGTTGCGACGATGATTTTTTCGTAACAAAAAAATGCTCAGGCGA
AGGCTTAGCTGGAAATAAAAAGagtcattttttgttttgttgaaaatcGA
TTGAAGTAATCTTTGACGTAAGGAGTACAACAGTAGTAGGCccttcaaaa
ttattttaagttcTAAATAGAAAGCATaattacaaacaaacaaacaaata
aaaagaaagtaacgTAAAAAATTACCATATAATAATTCTACACAAATTAt
ttaattagaaaaaaaacaacaacacaaaTAAGATTCAGAATCATACAGAA
GATTTTGGGAATAAGGTAGTACAAGTTTACTAAGAAAtagaataaaattg
attttactaGAAACCTAACAAGTATTTCTTCGTGTCGAAACAGACGAAAG
GAAATTTCATCGGGTTATAcgaataaaaaacattttatcgtgtaaacaaa
aaaagaatgacaaatttAAGGAATTTGAGGCAAAGGCGAAGAGGAATAGG
AAATAAATACAAAACCCTAATAGACAATTTAAATTAAACGATCAAATGAT
GGCCATATAGTTATCTGCTAGAGAAGCTTAAAAATGAACCATGTTCAATT
TCTACTTAAAAGAGGCTCCCATAATATTGAttggaaatcaaaattaattt
tagaatGATGGCTGTCAGAGAGGACGGTAAAATATATACTTGTTTCATCA
GATtataaacagcaaaaaaattgttCCCCCATAAATCAAGtgagaacgtc
aaaaatttgtTCGTTTATACCGTAAAAAAGTCACATGTGATGACGTAATC
GAATGTCGTTTCTAATGACTATGCTAGCATCTGGTTTCGTATAAACCACT
CTTAGAGATGTATCGGACCCACTTGATAACATCATGATCACTGTAATTCA
ATTTCGATTCGAACACCTTCAAGTAGCGTACCTTCAAGCCAGAACATGAG
AAAGGGACCTACAAGAAAAAGAGATAATTGTACATTCAATGAGTGCATAT
AGAGCTC
Run BLAST on NCBI

protein sequence of TCONS_00002883-protein

>TCONS_00002883-protein ID=TCONS_00002883-protein|Name=TCONS_00002883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MPRLGRRESEDMQRLFDTFDCDMNGRISRRELKAVFKALNVTINDENLRS
MFHSADKDKSGFIEFGEFVRVFSPPSQDELLNAFKRFDKNGDGFLTPDEV
KEVLRDANQPATDRNVTEMIESVDSNGDGKINYKEFLTMLKS
Run BLAST on NCBI

transcript from alignment at sc0000023:672663..676113-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002883 ID=TCONS_00002883|Name=TCONS_00002883|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at sc0000023:672663..676113- (Clytia hemisphaerica)
ATAAGAATAGTACAGAATAAAGAAGCAAAAAGGGGAGAAAGAACAGTGGC
TGAAATTAAATATGTTATCAAAACAAAAAAGTTCTTGAGTAAAGAGAAGA
AGGACTACATTTTCAAAAAGTATATGAAAAACTTTGGAAAATATATAAGA
TAGGTGAAAAAAGGATAGAAAAAATATATGCCATTATAAAACTTCTCTAA
TTAATATAAGGAATTTGAAATAAATAACATTAGCTTGAATGTGATAATCT
GCAGCGTTACGGGAGCGTTGCTTAGAAATTTTGGAAAAAACAACATAAAT
TGCAAACACACGAATAAAATTTTATACCGATAGGACTTTGTCAATATGGT
AAGTTTTTTTTTTCTATTTCACATCTGTGAGGAGGGGTCTGTTTAAAAAT
GGAAACAAAAGGGCAGCTGGATTTTGAAAAAAAAAATGATAGTACCGCTG
AATATTTTATCGGTACGCCGTTATTTGTCTGACTGACTGGATTTTATGCC
GGACCCGGTATTTCAAGGAGAAATTACCTGTACATTCCGGTTATTCGTAC
CCTTGGAAAGGTCCCCGCATTTGAGGATGGTATAAGAATGCAAGAATAGC
GTCTAAAATACTCTCTTTGAGTATCTGTTAGTTCAAAGAGCTTTATAAAC
CTATCCAGCAGTAAATCAAGTTTTATTTACAATTTCTAGCCTCGACTTGG
AAGACGCGAAAGTGAAGGTATTTATTTCTATCTTATCTTTTTTACTTGTT
ACTTTTGCTGCCTTCTGACTCCGTCAAATTGGAAAGTACAGTTGACGCTC
TCTAATTCGATCTTCTATTCTTCAAGTTAGAGAAAGATTCGCATTTAGAA
ATTCTCATAAACGGCGTTCTTCTAATCGGCGACACGCTCTCCTATTCCAT
CAAAATCTGATTTCCCCTGAAAATCGAAAATAAGAGAGGCGTCAATTAGA
GCACTAAAGGAAAGGTAAAGGCAAAATTGTTCGAAATATCTGTAGATACC
AGGTCTGTTCAAAAACCATACAAAAACTTTGTTGGAAATATGGCATCTAA
AATTTAATTCTTCTTTCTTAGATATGCAGAGACTGTTTGATACATTCGAT
TGTGATATGAATGGAAGGATTTCAAGAAGAGAATTGAAAGCTGTCTTCAA
AGCTTTGAATGTTACCATCAATGATGAAAATTTGAGGTCTATGTTTCACT
CCGCTGATAAAGACAGTAAGTACCCGTCGTACCCGTTGCTTTGTGCCTGT
AATTTTATATACGGAAGTAACAAAAAAGACCGGGTGTTTGACATTATAAT
ACATACATAATAAAACAATTCCAATAGCAATACGGTAAATTTGAATTCGC
AAACAGTAAAGCTAGTGGCAAATGACCGGGCTACTTTTAGTGGTTCCGTA
CAAAACATTACGCCATGAAAATCATGAACAACCTCTTGTGGAAAAAAGAG
GGTTGCATTTGTGAAGTAAAGTCAGTCATTATTTTCTCATTTTTTTCTCT
TAGAAAGTGGTTTTATTGAATTTGGTGAATTTGTAAGAGTATTTAGTCCA
CCGAGTCAAGATGAGCTTTTAAATGCATTTAAACGATTCGATAAGAATGG
GGATGGTTTTCTGACACCTGATGAGGTGAAAGAAGTATTGAGAGATGCTA
ATCAGCCGGCAACCGATCGGAATGTAACAGAAATGATTGAATCTGTTGAT
TCGAATGGTGATGGAAAGATTAACTATAAAGGTAGGTTCTTAAAATTGTA
GAATGAAAACAAAAGCTCAAAAGAAATGGGTTCCATGATTAAGGTATTCA
TATGAAGGGAATTGACCGAAACCTTTGATTTAGTTTAACCAAAGATGGTC
AATAGTATAGGTTACTGCGACAACCCAAGTAGATTTTAATATTTTCATCT
TTAAGGAAAAGTTCCCCTTTATATGATTGTATACCATAGAATATGATGGG
AAGCAAAATCTTGTTCTCTGTCACCCGTTGTTCTGCTAAGCAGGAATACT
CTGTTCTGGTGTGAAAATGTAACCGACAATAAATAGAAAAGTAATTATGA
AAAATGATAATATTGGACCCCTGATGTATAGAGCTCTTATCGCATAACTG
AAAGCGTCGTCTTTAATATTTTCCTTTTTCTTTTTTCTACAGAATTTCTC
ACGATGTTAAAATCTTAGTGTAGTGGCTACAACATTTGAAAGATTCAAAA
TATTATGATTAGAATTTTTGTAAATATTGTCAAAATGAAATAAATTATAG
CAAATAAAAAGAACTTTTTGAACAGAATTTTAAAACTTATCCTCGTTAAG
AAGGAGTTCTAATCTAAGTTACGTGATATCTCCTTCCTTTAGAGCAGCCA
TGTGATTGCTCTTAAATCTATCCATGTCGAAATGTGGCGACTTATACATA
TAGCCCAAAAATAATAGAATAATTCGAATAATTATCAGGACATCTATCGC
CGTTGCGACGATGATTTTTTCGTAACAAAAAAATGCTCAGGCGAAGGCTT
AGCTGGAAATAAAAAGAGTCATTTTTTGTTTTGTTGAAAATCGATTGAAG
TAATCTTTGACGTAAGGAGTACAACAGTAGTAGGCCCTTCAAAATTATTT
TAAGTTCTAAATAGAAAGCATAATTACAAACAAACAAACAAATAAAAAGA
AAGTAACGTAAAAAATTACCATATAATAATTCTACACAAATTATTTAATT
AGAAAAAAAACAACAACACAAATAAGATTCAGAATCATACAGAAGATTTT
GGGAATAAGGTAGTACAAGTTTACTAAGAAATAGAATAAAATTGATTTTA
CTAGAAACCTAACAAGTATTTCTTCGTGTCGAAACAGACGAAAGGAAATT
TCATCGGGTTATACGAATAAAAAACATTTTATCGTGTAAACAAAAAAAGA
ATGACAAATTTAAGGAATTTGAGGCAAAGGCGAAGAGGAATAGGAAATAA
ATACAAAACCCTAATAGACAATTTAAATTAAACGATCAAATGATGGCCAT
ATAGTTATCTGCTAGAGAAGCTTAAAAATGAACCATGTTCAATTTCTACT
TAAAAGAGGCTCCCATAATATTGATTGGAAATCAAAATTAATTTTAGAAT
GATGGCTGTCAGAGAGGACGGTAAAATATATACTTGTTTCATCAGATTAT
AAACAGCAAAAAAATTGTTCCCCCATAAATCAAGTGAGAACGTCAAAAAT
TTGTTCGTTTATACCGTAAAAAAGTCACATGTGATGACGTAATCGAATGT
CGTTTCTAATGACTATGCTAGCATCTGGTTTCGTATAAACCACTCTTAGA
GATGTATCGGACCCACTTGATAACATCATGATCACTGTAATTCAATTTCG
ATTCGAACACCTTCAAGTAGCGTACCTTCAAGCCAGAACATGAGAAAGGG
ACCTACAAGAAAAAGAGATAATTGTACATTCAATGAGTGCATATAGAGCT
C

Coding sequence (CDS) from alignment at sc0000023:672663..676113-

>TCONS_00002883 ID=TCONS_00002883|Name=TCONS_00002883|organism=Clytia hemisphaerica|type=CDS|length=2145bp|location=Sequence derived from alignment at sc0000023:672663..676113- (Clytia hemisphaerica)
AATTTCTCACGATGTTAAAATCTTAGAAAGTGGTTTTATTGAATTTGGTG
AATTTGTAAGAGTATTTAGTCCACCGAGTCAAGATGAGCTTTTAAATGCA
TTTAAACGATTCGATAAGAATGGGGATGGTTTTCTGACACCTGATGAGGT
GAAAGAAGTATTGAGAGATGCTAATCAGCCGGCAACCGATCGGAATGTAA
CAGAAATGATTGAATCTGTTGATTCGAATGGTGATGGAAAGATTAACTAT
AAAGATATGCAGAGACTGTTTGATACATTCGATTGTGATATGAATGGAAG
GATTTCAAGAAGAGAATTGAAAGCTGTCTTCAAAGCTTTGAATGTTACCA
TCAATGATGAAAATTTGAGGTCTATGTTTCACTCCGCTGATAAAGACACC
TCGACTTGGAAGACGCGAAAGTGAAGATGAATTTCTCACGATGTTAAAAT
CTTAGAAAGTGGTTTTATTGAATTTGGTGAATTTGTAAGAGTATTTAGTC
CACCGAGTCAAGATGAGCTTTTAAATGCATTTAAACGATTCGATAAGAAT
GGGGATGGTTTTCTGACACCTGATGAGGTGAAAGAAGTATTGAGAGATGC
TAATCAGCCGGCAACCGATCGGAATGTAACAGAAATGATTGAATCTGTTG
ATTCGAATGGTGATGGAAAGATTAACTATAAAGATATGCAGAGACTGTTT
GATACATTCGATTGTGATATGAATGGAAGGATTTCAAGAAGAGAATTGAA
AGCTGTCTTCAAAGCTTTGAATGTTACCATCAATGATGAAAATTTGAGGT
CTATGTTTCACTCCGCTGATAAAGACACCTCGACTTGGAAGACGCGAAAG
TGAAGATGAATTTCTCACGATGTTAAAATCTTAGAAAGTGGTTTTATTGA
ATTTGGTGAATTTGTAAGAGTATTTAGTCCACCGAGTCAAGATGAGCTTT
TAAATGCATTTAAACGATTCGATAAGAATGGGGATGGTTTTCTGACACCT
GATGAGGTGAAAGAAGTATTGAGAGATGCTAATCAGCCGGCAACCGATCG
GAATGTAACAGAAATGATTGAATCTGTTGATTCGAATGGTGATGGAAAGA
TTAACTATAAAGATATGCAGAGACTGTTTGATACATTCGATTGTGATATG
AATGGAAGGATTTCAAGAAGAGAATTGAAAGCTGTCTTCAAAGCTTTGAA
TGTTACCATCAATGATGAAAATTTGAGGTCTATGTTTCACTCCGCTGATA
AAGACACCTCGACTTGGAAGACGCGAAAGTGAAGATGAATTTCTCACGAT
GTTAAAATCTTAGAAAGTGGTTTTATTGAATTTGGTGAATTTGTAAGAGT
ATTTAGTCCACCGAGTCAAGATGAGCTTTTAAATGCATTTAAACGATTCG
ATAAGAATGGGGATGGTTTTCTGACACCTGATGAGGTGAAAGAAGTATTG
AGAGATGCTAATCAGCCGGCAACCGATCGGAATGTAACAGAAATGATTGA
ATCTGTTGATTCGAATGGTGATGGAAAGATTAACTATAAAGATATGCAGA
GACTGTTTGATACATTCGATTGTGATATGAATGGAAGGATTTCAAGAAGA
GAATTGAAAGCTGTCTTCAAAGCTTTGAATGTTACCATCAATGATGAAAA
TTTGAGGTCTATGTTTCACTCCGCTGATAAAGACACCTCGACTTGGAAGA
CGCGAAAGTGAAGATGAATTTCTCACGATGTTAAAATCTTAGAAAGTGGT
TTTATTGAATTTGGTGAATTTGTAAGAGTATTTAGTCCACCGAGTCAAGA
TGAGCTTTTAAATGCATTTAAACGATTCGATAAGAATGGGGATGGTTTTC
TGACACCTGATGAGGTGAAAGAAGTATTGAGAGATGCTAATCAGCCGGCA
ACCGATCGGAATGTAACAGAAATGATTGAATCTGTTGATTCGAATGGTGA
TGGAAAGATTAACTATAAAGATATGCAGAGACTGTTTGATACATTCGATT
GTGATATGAATGGAAGGATTTCAAGAAGAGAATTGAAAGCTGTCTTCAAA
GCTTTGAATGTTACCATCAATGATGAAAATTTGAGGTCTATGTTTCACTC
CGCTGATAAAGACACCTCGACTTGGAAGACGCGAAAGTGAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001566XLOC_001566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002883-exon-sc0000023-1575043694:675766..676113TCONS_00002883-exon-sc0000023-1575043694:675766..676113Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1575043694:675397..675424TCONS_00002883-exon-sc0000023-1575043694:675397..675424Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1575043694:674899..675042TCONS_00002883-exon-sc0000023-1575043694:674899..675042Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1575043694:674383..674610TCONS_00002883-exon-sc0000023-1575043694:674383..674610Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1575043694:672663..673971TCONS_00002883-exon-sc0000023-1575043694:672663..673971Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1510915933:675766..676113TCONS_00002883-exon-sc0000023-1510915933:675766..676113Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1510915933:675397..675424TCONS_00002883-exon-sc0000023-1510915933:675397..675424Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1510915933:674899..675042TCONS_00002883-exon-sc0000023-1510915933:674899..675042Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1510915933:674383..674610TCONS_00002883-exon-sc0000023-1510915933:674383..674610Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1510915933:672663..673971TCONS_00002883-exon-sc0000023-1510915933:672663..673971Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1491911889:675766..676113TCONS_00002883-exon-sc0000023-1491911889:675766..676113Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1491911889:675397..675424TCONS_00002883-exon-sc0000023-1491911889:675397..675424Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1491911889:674899..675042TCONS_00002883-exon-sc0000023-1491911889:674899..675042Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1491911889:674383..674610TCONS_00002883-exon-sc0000023-1491911889:674383..674610Clytia hemisphaericaexon
TCONS_00002883-exon-sc0000023-1491911889:672663..673971TCONS_00002883-exon-sc0000023-1491911889:672663..673971Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002883-proteinTCONS_00002883-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:672663..676113 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0199296	0.100775	0.0859125	23.0463	23.0006	19.257	16.8743	7.06323	11.217	3.24339	2.38219	0.0482851	0.119371	5.92077	7.03272	8.2953	9.92201	12.0872	11.1386	3.19781	4.9622	3.87198	4.05696	1.48572	0.646191	0	0.0211508
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00002883 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.170e-20
Identity = 46/145 (31.72%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:  352 RLGRRESEDMQRLFDTFDCDMNGRISRRELKAVFKALNVTINDENLRSMFHSADKDKSGFIEFGEFVRVFS-----PPSQDELLNAFKRFDKNGDGFLTPDEVKEVLRDANQPATDRNVTEMIESVDSNGDGKINYKEFLTMLKS 771
            +L   +  + +  F  FD D +G I+ +EL  V ++L     +  L+ M +  D D +G I+F EF+ + +       S++E+  AF+ FDK+G+G+++  E++ V+ +  +  TD  V EMI   D +GDG++NY+EF+ M+ +
Sbjct:    4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00002883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.170e-2031.72Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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