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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002867 ID=TCONS_00002867|Name=TCONS_00002867|organism=Clytia hemisphaerica|type=transcript|length=3506bpRun BLAST on NCBI transcript from alignment at sc0000023:312038..322866- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002867 ID=TCONS_00002867|Name=TCONS_00002867|organism=Clytia hemisphaerica|type=transcript|length=10829bp|location=Sequence derived from alignment at sc0000023:312038..322866- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002867 vs. Swiss-Prot (Human)
Match: HUWE1 (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3) HSP 1 Score: 1010.36 bits (2611), Expect = 0.000e+0 Identity = 579/1233 (46.96%), Postives = 765/1233 (62.04%), Query Frame = 3
Query: 6 QHQSLIFHILKFTALLIEHSYARHLYNSVEHLITLLDCADGDIILAVLNLIYVFSKRSNYLSRLPSEKKKVLQEKLVDLAQTWGGLEAGCALEQCCSE----DVPTGAGNVYFEYYVNDTDGSSENSKGNGSTRFCIDLKNIHQISTSNVGELMESIIKAKKIPDNIQMAFYHRLRLAHAMTTYTKRLQFVQARLQALSILVYSNA-AVHVNTLVYDGLIEEIVNTLKHNEIGYKKLAEVKASCLKTLTAIIHLDRNPRLQSIIDSTGATSYHGFLPTLVRQCIQHMTRADLEPFPQQLATSLFSFLYHLASYESGCEALVASGLIEPLLKVVLWPG-QDDHITFVTRAVRVIDLITNLDMAAFQTHNGLNALVGRLQNEVKLCSGFHXXXXXXXXXXXXXXXXDDDCTMSTGLNENVTETAASGTASDVEMKEDEXXXXXXXXXXXXXXXXXKRNNHNQCLPQRAALLKSILNFLKKAIPDAAFVDITRSLMDENLQNALKMIISNAEYYGALLFLLATDVVTVFIFHEPSMLSSLQDSGLTWVVLRALIVKDVPATRENLASLPNTLSALCLNTRGLEAFVQCKPFERLFQILVSPEYLPAMKRRRSSDPQGDTAMHLGSAMDELMRHQPTLKTDAMKAIIKLLQRLSEMGADNKIIAFHPXXXXXXXXXXXXXXXXXXAAVSATXXXXXXXXXXXXXYQSLLIRKQDKKEHEDTEPPVDQTKSKTSERKFVPVVDYVLNVTKFLDNILSNNGTDDHCVEFVRLDGLQPLYGLLQMPNFPLEFPLMTACQSIAQVSKSIAMLSQETKVFKEGXXXXXXXXXXXXXXYANVKT-SGSVLLNELAGTDNPLEALYDSTQTPIVHAMSAVHAYINVFVYLSRGAQSDVRNMSIQNWGSELGKTVLEKLSTLYMKLVWESSALLTLCTPNIASQEDLSFAAEDLEKLTMKKIE-------KEESGE-----------------------------------VSNKKGMTQIT--------LMKWLLTSSSHLGRALAELFGLLVHQCVGMDQGSRLRRHAPNSNQPVAPSVKARSIATLLTRLLMKGLSWKCPDSIKVPRLRLTFYICSVGFSTPMLFDNLKNPYHLMLQEFQKAGGLEALFDAFDVVLQ-----EYIIGKRHEDIKSTVGIGEFLEGWLGLVNRLANTKYLFESTHTLPTTSFVPG----HEPFNSAEFMVYVHKYAFNSIMKL 3506
Q + L+ +L FTALLIE+S++RHLY+S+EHL TLL +D ++LAVLNL+YVFSKRSNY++RL S+K+ L +L LA++WGG E G L +CC + P A ++FE+Y + + +T I ++ + +IS S E+MES+ K IP + QM + +RLAH + + KRLQ VQARL A+SILVYSNA N+++Y+GLIEE+V+ L +I K+L E+KA+ L+TLT+I+HL+R P+L SIID TG SYHGFLP LVR CIQ M ++P+P Q AT+LFSFLYHLASY++G EALV+ G++E LLKV+ + G + D ITFVTRAVRV+DLITNLDMAAFQ+H+GL+ + RL++EV LC +C T G + +M + QC+PQRAALLKS+LNFLKKAI D AF D R +MD +L +LK IISNAEYYG LFLLAT+VVTVF+F EPS+LSSLQD+GLT V+L AL++KDVPATRE L SLPN SALCLN RGL++FVQC+PFERLF++L+SP+YLPAM+RRRSSDP GDTA +LGSA+DELMRHQPTLKTDA AIIKLL+ + +G D K I P+ T+ + AA A+ ++E + QS + + +TEP +Q T ER +P++DY+LNV KF+++ILSNN TDDHC EFV GL PL +L +PN P++FP ACQ++A V KSI LS E KV +EGL QL+ ++ +L+ L+ +++ GSVLL ELA N +A + TP++HA++A HAYI +FV+ R QS++R++S+ WGS+LG +VL KLS LY LVWES+ LL+LCTPN + F D++KL K + K GE S+ KG ++IT +K LL++SS LGRALAELFGLLV CVG R HA ++ AP+ ARS A+ LT+LL KGLSW+ P PR RLTF+ICSVGF++PMLFD K PYHLMLQ+F +GG ALF+ F+ L G H D+ G GEFL+ WL LV ++ N + ES H+LP +PG F++ F+V K AF I L
Sbjct: 88 QLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLHMMKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESP-SEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVL---QITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCR--------------------KECPFVIKPKIQRPNTTQEGEEMETDM------------------------DGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEAS--SEDEEEEEVQAMQSF-----NSTQQNETEP--NQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDSILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPN-SLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTT--TAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPD--GTGEFLDAWLMLVEKMVNPTTVLESPHSLPAK--LPGGVQNFPQFSALRFLVVTQKAAFTCIKNL 1256 The following BLAST results are available for this feature:
BLAST of TCONS_00002867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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