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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002864 ID=TCONS_00002864|Name=TCONS_00002864|organism=Clytia hemisphaerica|type=transcript|length=14504bp protein sequence of TCONS_00002864-protein >TCONS_00002864-protein ID=TCONS_00002864-protein|Name=TCONS_00002864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=4159bp TQHQSLIFHILKFTALLIEHSYARHLYNSVEHLITLLDCADGDIILAVLNRun BLAST on NCBI transcript from alignment at sc0000023:275948..322866- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002864 ID=TCONS_00002864|Name=TCONS_00002864|organism=Clytia hemisphaerica|type=transcript|length=46919bp|location=Sequence derived from alignment at sc0000023:275948..322866- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:275948..322866- >TCONS_00002864 ID=TCONS_00002864|Name=TCONS_00002864|organism=Clytia hemisphaerica|type=CDS|length=711360bp|location=Sequence derived from alignment at sc0000023:275948..322866- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002864 vs. Swiss-Prot (Human)
Match: HUWE1 (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3) HSP 1 Score: 1335.47 bits (3455), Expect = 0.000e+0 Identity = 820/1979 (41.44%), Postives = 1149/1979 (58.06%), Query Frame = 3
Query: 6 QHQSLIFHILKFTALLIEHSYARHLYNSVEHLITLLDCADGDIILAVLNLIYVFSKRSNYLSRLPSEKKKVLQEKLVDLAQTWGGLEAGCALEQCCSE----DVPTGAGNVYFEYYVNDTDGSSENSKGNGSTRFCIDLKNIHQISTSNVGELMESIIKAKKIPDNIQMAFYHRLRLAHAMTTYTKRLQFVQARLQALSILVYSNAAVH-VNTLVYDGLIEEIVNTLKHNEIGYKKLAEVKASCLKTLTAIIHLDRNPRLQSIIDSTGATSYHGFLPTLVRQCIQHMTRADLEPFPQQLATSLFSFLYHLASYESGCEALVASGLIEPLLKVVLWPG-QDDHITFVTRAVRVIDLITNLDMAAFQTHNGLNALVGRLQNEVKLCSGFHXXXXXXXXXXXXXXXXDDDCTMSTGLNENVTETAASGTASDVEMKEDEXXXXXXXXXXXXXXXXXKRNNHNQCLPQRAALLKSILNFLKKAIPDAAFVDITRSLMDENLQNALKMIISNAEYYGALLFLLATDVVTVFIFHEPSMLSSLQDSGLTWVVLRALIVKDVPATRENLASLPNTLSALCLNTRGLEAFVQCKPFERLFQILVSPEYLPAMKRRRSSDPQGDTAMHLGSAMDELMRHQPTLKTDAMKAIIKLLQRLSEMGADNKIIAFHPXXXXXXXXXXXXXXXXXXAAVSATXXXXXXXXXXXXXYQSLLIRKQDKKEHEDTEPPVDQTKSKTSERKFVPVVDYVLNVTKFLDNILSNNGTDDHCVEFVRLDGLQPLYGLLQMPNFPLEFPLMTACQSIAQVSKSIAMLSQETKVFKEGXXXXXXXXXXXXXXYANVKT-SGSVLLNELAGTDNPLEALYDSTQTPIVHAMSAVHAYINVFVYLSRGAQSDVRNMSIQNWGSELGKTVLEKLSTLYMKLVWESSALLTLCTPNIASQEDLSFAAEDLEKLTMKKIE-------KEESGE-----------------------------------VSNKKGMTQIT--------LMKWLLTSSSHLGRALAELFGLLVHQCVGMDQGSRLRRHAPNSNQPVAPSVKARSIATLLTRLLMKGLSWKCPDSIKVPRLRLTFYICSVGFSTPMLFDNLKNPYHLMLQEFQKAGGLEALFDAFDVVLQ-----EYIIGKRHEDIKSTVGIGEFLEGWLGLVNRLANTKYLFESTHTLPTTSFVPG----HEPFNSAEFMVYVHKYAFNSIMKLWDERVFKNSDNHLVAERILSIFCHILKGESQLPEKF-LQSAASKGADEKSKKNGLLTEIYRTPAPTTFGTQSTAEIVNETFVQQFVDMGFSAQHAREALLHANNNFDAATEYLLTTPAPAVPXXXXXXXXXXXXXXXXXXXXNTQEGXXXXXXXXXXXXIQAIALSLATTQETTKEGXXXXXXXXXXTEQQDTSPTPPKLTVDDLTNFQSLVVENMKGIFFGSLELLDAVPSAVHTVCDLHLAMASKNGEEWRRETLGELTEQIMRNSQVICDKIL----SSNETEQSLMKFLCESKESQQLATRLHLFLLMSQGLGNVWGNVLQTGNPFNLLIMLLKMVSNVLTKVKQIGLEVKTPELLSPLLLTFDQYEKVVLFSKRKQK-----QEKSHTWKWFDDRSGRWCNYSVSNNTSIDTAYQAGESTVRFTAGRRRYMVFFKTLVQINEDTGNRRPIMLDVLQXXXXXXXXXXXXXSTDANNAEXXXXXXXXXDVVMTPVERPSGKSLKRKLXXXXXXXXXXXXXXXXKKIEVL-EGLNNAQIESIIEYCVDLLSLQVNSNTLNAIMRLLLRFTRDYNMAQAFAHGNGVQHLLNLTEASSFPGALHLSSLLLRHIVEDTETMKNAVNRAVALASNGGVPNMFCGVGQNSVGAKELHYLLRALGPIACRNADLYNESTRKVMRISTNSWRGQLDKGLPPSITQIVKVP---QDMKTIGLNGNVKPTT--VISDFVYILLTTLAERYALE 5696
Q + L+ +L FTALLIE+S++RHLY+S+EHL TLL +D ++LAVLNL+YVFSKRSNY++RL S+K+ L +L LA++WGG E G L +CC + P A ++FE+Y + + +T I ++ + +IS S E+MES+ K IP + QM + +RLAH + + KRLQ VQARL A+SILVYSNA N+++Y+GLIEE+V+ L +I K+L E+KA+ L+TLT+I+HL+R P+L SIID TG SYHGFLP LVR CIQ M ++P+P Q AT+LFSFLYHLASY++G EALV+ G++E LLKV+ + G + D ITFVTRAVRV+DLITNLDMAAFQ+H+GL+ + RL++EV LC +C T G + +M + QC+PQRAALLKS+LNFLKKAI D AF D R +MD +L +LK IISNAEYYG LFLLAT+VVTVF+F EPS+LSSLQD+GLT V+L AL++KDVPATRE L SLPN SALCLN RGL++FVQC+PFERLF++L+SP+YLPAM+RRRSSDP GDTA +LGSA+DELMRHQPTLKTDA AIIKLL+ + +G D K I P+ T+ + AA A+ ++E + QS + + +TEP +Q T ER +P++DY+LNV KF+++ILSNN TDDHC EFV GL PL +L +PN P++FP ACQ++A V KSI LS E KV +EGL QL+ ++ +L+ L+ +++ GSVLL ELA N +A + TP++HA++A HAYI +FV+ R QS++R++S+ WGS+LG +VL KLS LY LVWES+ LL+LCTPN + F D++KL K + K GE S+ KG ++IT +K LL++SS LGRALAELFGLLV CVG R HA ++ AP+ ARS A+ LT+LL KGLSW+ P PR RLTF+ICSVGF++PMLFD K PYHLMLQ+F +GG ALF+ F+ L G H D+ G GEFL+ WL LV ++ N + ES H+LP +PG F++ F+V K AF I LW+ + K + AE +L+I CHIL+GE + E+ + S+G ++ ++ G G++ + VN+ +QQ +DMGF+ +HA EALL+ + + ATEYLLT P P + + + A A + + + +D +E + +E + + QD P L D+L F + + G F LLD +P V+ VCDL + +NG ++R L ++ Q+ + V+ L S +T + + ++ LATR+ L L+ + L V+++ N+LI LL++V L K+ EV+TP+ ++P+LL D YEK + SKR+ + Q S+ W+WFDDRSGRWC+YS SNN++ID+A+++GE++VRFTAGRRRY V F T+VQ+NE+TGNRRP+ML +L+ N S ++N E + + ++ ++R K L+ E + TSL E K E+L +GL + +I CV +L + V+ +TL+A +RL LR TRD+ A FA + +LNLT++S F G L +LLLRHI+ED T+++ + + V A+ G + GV S+G++E++Y+LR LGP ACRN D++ E +RI+ + RG +K P Q +KT L + P I + +Y +L LA +A E
Sbjct: 88 QLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLHMMKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESP-SEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVL---QITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCR--------------------KECPFVIKPKIQRPNTTQEGEEMETDM------------------------DGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEAS--SEDEEEEEVQAMQSF-----NSTQQNETEP--NQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDSILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPN-SLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTT--TAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPD--GTGEFLDAWLMLVEKMVNPTTVLESPHSLPAK--LPGGVQNFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRM-AESMLAILCHILRGEPVIRERLSKEKEGSRGEEDTGQEEG--------------GSRREPQ-VNQQQLQQLMDMGFTREHAMEALLN-TSTMEQATEYLLTHPPPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQE----EEEAKCLEKFQDADP----LEQDELHTFTDTM---LPGCF----HLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQK-EVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLR------VPRLNKNSKNSNGQELEKTLEESKEM---DIKRKENKGNDTPLALESTNTEKETSLEETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSPLPVIPDTIKEVIYDMLNALAAYHAPE 1960 HSP 2 Score: 805.438 bits (2079), Expect = 0.000e+0 Identity = 414/688 (60.17%), Postives = 508/688 (73.84%), Query Frame = 3
Query: 11775 DLHLPAMATLTAKRSNQSLFLRILKVILQLRDAAKKIAKKPQGSSNPTSRPRGFRLIERLHHGGSSLREVVAALEADMEAMYDMIDRFXXXXXXXXXXXXXXSRNRTXXXXXXXXXXXXXXXXXXXXXXEDSAAGSSNQXXXXXXXXXXXXXXXXXLSSQLQLDALWDVLGDALAELAETTDTNAVLVLQPAVESFFLVHGSEKEESADKNKDQNTSRDALQSTSSIDIPPSRVP*CRQIGYSPASSRHGSQSVTTTSYANLPPDTQKFLRFAETHRTVLNQILRQSNSTLAEGPFAVLVNHTRLLDFDIKRRHFRQELDKQDKGHRREDMAVHIRRDRVFEDSFRELHRRSAEEMKNRLYIVFDGEEGQDAGGLLREWYGIMARELFNPDYALFMTSQGEKATYLPNRNSECNPNHLSYFKFAGRIVAKAIFDNKLLDCYFTRSFYKHILGKAVSYTDMEIEDYSFYQGLVYLLEHDIADLGYEVTFSLEVQRFGLNEVHDLKPNGRNIPVTEDTKRQYVKLVCIEKMTNSIQQQIDSFLEGFYEIIPKRLISIFDEQELELLIAGLHTIDIEDLKLNTEYHKYTESSLQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLLGFAKLEGMNGVQKFQIHRDDRSTDRLPCAHTCFNQLDLPAYETYDKLFSQLLKAIQECTEGFGLA 13838
+L LP+M+ LT+K S Q FLR+L+VI+QLRD ++ KK + + RL SS++ V LEA+ +A+ M+ A S++ + S +D+ + +S+ + +E+E P+ P LS QL LD LWD+LG+ L EL E+ D +AVLVLQPAVE+FFLVH +E+E S +D S+ A + P+ + P SR S ++S LPPDTQKFLRFAETHRTVLNQILRQS + LA+GPFAVLV++ R+LDFD+KR++FRQEL++ D+G R+EDMAVH+RRD VFEDS+RELHR+S EEMKNRLYIVF+GEEGQDAGGLLREWY I++RE+FNP YALF TS G++ TY N +S CNPNHLSYFKF GRIVAKA++DN+LL+CYFTRSFYKHILGK+V YTDME EDY FYQGLVYLLE+D++ LGY++TFS EVQ FG+ EV DLKPNG NI VTE+ K++YV LVC +MT +I++Q+ +FLEGFYEIIPKRLISIF EQELELLI+GL TIDI+DLK NTEYHKY +S+QIQWFWRALRSFDQADRAKFLQFVTGTSKVPL GFA LEGMNG+QKFQIHRDDRSTDRLP AHTCFNQLDLPAYE+++KL LL AIQEC+EGFGLA
Sbjct: 3704 ELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTG---------RLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSQSEASVRREESPMDVDQPSPSA----QDTQSIASDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERE-SKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSS---LPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 4374 HSP 3 Score: 248.054 bits (632), Expect = 7.317e-65 Identity = 214/550 (38.91%), Postives = 287/550 (52.18%), Query Frame = 3
Query: 9291 PGPSSSQTTADQIRRELESLGMPEGVDPSFLAALPDNIREEVLREQFGIRLXXXXXXXXXXXXXXXXXXXXXXXGAAAVTSDPP-QEVSPEFLAALPEEFQREVLEQQRMEQARFTAAQQ-TPDVPVDAAEFVRNLPPPLRRQVLADMDDTVLAVLPAELSTEAQGLRRELEQRR---------ANQTRTDFSQILRHTGMAR--SGGASFQSIARLFPRGGPM-----SSWKVTDGHPNSSGQKKLGRQLLDPESLTCLLVLLFLNDSTLNATRLHRILRNLSYHNPTKQWIILALISILRRTSSLNQENMVALNKQFAAXXXXXXXXXXXXXXXXXXXXXXXGDFCEELPPNSNVSQSSVHEHWLSRTLNLAFGGCVNIFQI-------HKESESSRKPWDYFVTVHQQACLDVSKQTLEALSFLAKNFPSSFTPQLEKNKEEESQGESGVKEPDAEASSQ------SEFWDVLVRLNSSRSGQKGKAPSKCLKEFPKVENST---SFVGSPLVKILSMLSHPVIKQSTXXXXXXXXXXAVISMSLPE 10838
P PS+S D L + +PEGVDPSFLAALPD+IR EVL+ Q GIR + A AV +P EVSPEFLAALP Q EVL QQR EQ R AQ + D P+D F++ LP LRR VL DM+D+VLAV+P +++ EAQ LRRE E R+ + + + S ILR SG Q RGG SS G + + GR LLD E+L+CLLVLLF+++ LN +RLHR+LRNL YH T+ W+I +L+SIL+R+S E + K + +S + S + + D ++ S+SS WLS +++ A G NIFQI H E +S V +H QA V + L+ L LAK FPS FT Q K ES E G K +S ++FWD+LV+L++ +KGK K + E T S SPL ++++MLSHPVI++S+LLT+KLLRLL++IS++LPE
Sbjct: 2947 PLPSTSSEEED----PLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIR-------------PPTRTAPSTNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSS--ESELCIETPKLTTSEEKGKKSSKSCGSSSHENRPL---DLLHKME-----SKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHAS---GGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGNKACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSPYSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPE 3466 HSP 4 Score: 99.3673 bits (246), Expect = 5.791e-20 Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = 3
Query: 6072 YAAVARIIVDFVYDTSNLSQSARSYVNDGSTALCFIFDRLLPYSTRDPTQATTENTKDNKPSVISTLARQLLSVLGSYWHNVDIQNVFITELKSALSRTLQYPESRSKHLHLQALFNLITSMIESAAPIS-FSSQPPLQN-----TTFVKLLIKRGLISDLAKITHSLDLSSHDLVPTVNLMLKPLEKLS 6623
Y +A +I ++ Y + QS + + + L F+ D LLP+ T+N +D LAR L+ L + D Q + E+K+AL R L ES KH LQA+ +I++++ES S F S + ++L +K+GL++DLA++ HSLDLSS ++ TVN LKPLE LS
Sbjct: 2082 YVGIATLIANYSY---TVGQS--ELIKEDCSVLAFVLDHLLPH---------TQNAEDKD---TPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLS 2254 The following BLAST results are available for this feature:
BLAST of TCONS_00002864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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