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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002863 ID=TCONS_00002863|Name=TCONS_00002863|organism=Clytia hemisphaerica|type=transcript|length=8693bp transcript from alignment at sc0000023:275948..301925- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002863 ID=TCONS_00002863|Name=TCONS_00002863|organism=Clytia hemisphaerica|type=transcript|length=25978bp|location=Sequence derived from alignment at sc0000023:275948..301925- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002863 vs. Swiss-Prot (Human)
Match: HUWE1 (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3) HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0 Identity = 414/688 (60.17%), Postives = 508/688 (73.84%), Query Frame = 3
Query: 5964 DLHLPAMATLTAKRSNQSLFLRILKVILQLRDAAKKIAKKPQGSSNPTSRPRGFRLIERLHHGGSSLREVVAALEADMEAMYDMIDRFXXXXXXXXXXXXXXSRNRTXXXXXXXXXXXXXXXXXXXXXXEDSAAGSSNQXXXXXXXXXXXXXXXXXLSSQLQLDALWDVLGDALAELAETTDTNAVLVLQPAVESFFLVHGSEKEESADKNKDQNTSRDALQSTSSIDIPPSRVP*CRQIGYSPASSRHGSQSVTTTSYANLPPDTQKFLRFAETHRTVLNQILRQSNSTLAEGPFAVLVNHTRLLDFDIKRRHFRQELDKQDKGHRREDMAVHIRRDRVFEDSFRELHRRSAEEMKNRLYIVFDGEEGQDAGGLLREWYGIMARELFNPDYALFMTSQGEKATYLPNRNSECNPNHLSYFKFAGRIVAKAIFDNKLLDCYFTRSFYKHILGKAVSYTDMEIEDYSFYQGLVYLLEHDIADLGYEVTFSLEVQRFGLNEVHDLKPNGRNIPVTEDTKRQYVKLVCIEKMTNSIQQQIDSFLEGFYEIIPKRLISIFDEQELELLIAGLHTIDIEDLKLNTEYHKYTESSLQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLLGFAKLEGMNGVQKFQIHRDDRSTDRLPCAHTCFNQLDLPAYETYDKLFSQLLKAIQECTEGFGLA 8027
+L LP+M+ LT+K S Q FLR+L+VI+QLRD ++ KK + + RL SS++ V LEA+ +A+ M+ A S++ + S +D+ + +S+ + +E+E P+ P LS QL LD LWD+LG+ L EL E+ D +AVLVLQPAVE+FFLVH +E+E S +D S+ A + P+ + P SR S ++S LPPDTQKFLRFAETHRTVLNQILRQS + LA+GPFAVLV++ R+LDFD+KR++FRQEL++ D+G R+EDMAVH+RRD VFEDS+RELHR+S EEMKNRLYIVF+GEEGQDAGGLLREWY I++RE+FNP YALF TS G++ TY N +S CNPNHLSYFKF GRIVAKA++DN+LL+CYFTRSFYKHILGK+V YTDME EDY FYQGLVYLLE+D++ LGY++TFS EVQ FG+ EV DLKPNG NI VTE+ K++YV LVC +MT +I++Q+ +FLEGFYEIIPKRLISIF EQELELLI+GL TIDI+DLK NTEYHKY +S+QIQWFWRALRSFDQADRAKFLQFVTGTSKVPL GFA LEGMNG+QKFQIHRDDRSTDRLP AHTCFNQLDLPAYE+++KL LL AIQEC+EGFGLA
Sbjct: 3704 ELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTG---------RLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSQSEASVRREESPMDVDQPSPSA----QDTQSIASDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERE-SKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSS---LPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 4374 HSP 2 Score: 248.054 bits (632), Expect = 3.454e-65 Identity = 214/550 (38.91%), Postives = 287/550 (52.18%), Query Frame = 3
Query: 3480 PGPSSSQTTADQIRRELESLGMPEGVDPSFLAALPDNIREEVLREQFGIRLXXXXXXXXXXXXXXXXXXXXXXXGAAAVTSDPP-QEVSPEFLAALPEEFQREVLEQQRMEQARFTAAQQ-TPDVPVDAAEFVRNLPPPLRRQVLADMDDTVLAVLPAELSTEAQGLRRELEQRR---------ANQTRTDFSQILRHTGMAR--SGGASFQSIARLFPRGGPM-----SSWKVTDGHPNSSGQKKLGRQLLDPESLTCLLVLLFLNDSTLNATRLHRILRNLSYHNPTKQWIILALISILRRTSSLNQENMVALNKQFAAXXXXXXXXXXXXXXXXXXXXXXXGDFCEELPPNSNVSQSSVHEHWLSRTLNLAFGGCVNIFQI-------HKESESSRKPWDYFVTVHQQACLDVSKQTLEALSFLAKNFPSSFTPQLEKNKEEESQGESGVKEPDAEASSQ------SEFWDVLVRLNSSRSGQKGKAPSKCLKEFPKVENST---SFVGSPLVKILSMLSHPVIKQSTXXXXXXXXXXAVISMSLPE 5027
P PS+S D L + +PEGVDPSFLAALPD+IR EVL+ Q GIR + A AV +P EVSPEFLAALP Q EVL QQR EQ R AQ + D P+D F++ LP LRR VL DM+D+VLAV+P +++ EAQ LRRE E R+ + + + S ILR SG Q RGG SS G + + GR LLD E+L+CLLVLLF+++ LN +RLHR+LRNL YH T+ W+I +L+SIL+R+S E + K + +S + S + + D ++ S+SS WLS +++ A G NIFQI H E +S V +H QA V + L+ L LAK FPS FT Q K ES E G K +S ++FWD+LV+L++ +KGK K + E T S SPL ++++MLSHPVI++S+LLT+KLLRLL++IS++LPE
Sbjct: 2947 PLPSTSSEEED----PLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIR-------------PPTRTAPSTNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSS--ESELCIETPKLTTSEEKGKKSSKSCGSSSHENRPL---DLLHKME-----SKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHAS---GGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGNKACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSPYSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPE 3466 HSP 3 Score: 98.9821 bits (245), Expect = 4.165e-20 Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = 3
Query: 261 YAAVARIIVDFVYDTSNLSQSARSYVNDGSTALCFIFDRLLPYSTRDPTQATTENTKDNKPSVISTLARQLLSVLGSYWHNVDIQNVFITELKSALSRTLQYPESRSKHLHLQALFNLITSMIESAAPIS-FSSQPPLQN-----TTFVKLLIKRGLISDLAKITHSLDLSSHDLVPTVNLMLKPLEKLS 812
Y +A +I ++ Y + QS + + + L F+ D LLP+ T+N +D LAR L+ L + D Q + E+K+AL R L ES KH LQA+ +I++++ES S F S + ++L +K+GL++DLA++ HSLDLSS ++ TVN LKPLE LS
Sbjct: 2082 YVGIATLIANYSY---TVGQS--ELIKEDCSVLAFVLDHLLPH---------TQNAEDKD---TPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLS 2254 The following BLAST results are available for this feature:
BLAST of TCONS_00002863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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