TCONS_00002836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002836
Unique NameTCONS_00002836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002836 ID=TCONS_00002836|Name=TCONS_00002836|organism=Clytia hemisphaerica|type=transcript|length=1489bp
tagcatagagaaaaaaaagaaggacAAAAAAGCAAACCACACCAAGCAGA
CAAGCAGATACACACCACAATCCAGTTTCTTCTTATCTAGAGGATTAAAC
AAATCTGAAAGACATAATAATCATGACAGAGATTGAAGAAAAAGCCACAC
CCACAGAAAACAAGTACTCAGATGACGACCTTGGTATTCTATTAAAACAT
TACTACAAAAGGCTTTTTCCAACAAAACTCTACCATAAATGGTTACAGTA
TGGGGAAGGAACAACCACATTTGAAAATCGCGAATTTTCATTTACTTTGA
AAGATGATATTTACATTCGATATATGTCATTTGGGGATGCCTCTGATTTG
GATAAAGAACTGCAAAAGAGAGTCCCATATAAAATTGATATTGGTGCTGT
GTATAACCACAAGCCTAAAGATAACAAGACTTTACAAGCAGGAGTATTCA
AACCATTAGAAAAGGAATTAGTTTTTGATATTGATATGACAGATTATGAC
GATGTCAGAACTTGTTGCAGCGGTGCAGCAATTTGTAAAAAGTGTTGGCC
ATTCATGAATTTAGCAATAAAAATCATTGACAAAGTTCTTTCAGATGACT
TTGGGTTTAAACACAGGCTATGGGTATATTCAGGACGTCGTGGTGTCCAT
TGCTGGGTGGCAGATGAAACGGCCAGGAAGTTGACACAAGCTGGTCGTTC
AGCTGTTGCTGAGTATATCAATGTCATAAAGGGAGGAGAGTCACAAAACA
AGAAGGTTCAATTTCGAGGAACAAATCATGAACTGCACCCTTCACTCGAG
CGTGCCAAAGCACACGtgacaaaatatttcaatgacAGTTATTTGactga
ccaaaatattttggaaaatgaaGAGCAAAGAGAATTGATGTTGAAACTTA
TTCCTGATGAAAAAACAAGAAAGACAGTTAGTGAACAATGGGAAAAAATG
GGATCAAGCGCGTCCACAGAAGAACTCTGGACATATCTTTCTCAAACTGT
GgaagaaaaacatttcaatAAACATATTGCAGACGAGATCATGTTTCAAT
ATGTGTACCCAAGGCTTGATATCAACGTCAGCAAAGGATTGAACCATTTA
TTGAAAAGCCCATTCTGTATTCATCCCAAAACCGGTCGAGTTTGCGTACC
AATCAATCCGTCTAAAGTTGATGAGTTTGAGCCTGAAAAAGTTCCAACTA
TAAGTCAATTGATGGAAGAATTAGATGAAGCGAAGAAATTAAGCGATGGA
AATACTCAAGATACGAAAGACTCTAAAGaaTACATGTCTACATCATTGCG
TGATAGCATTGTACTCTTCAAGAAATTCGTCACTAGTCTTGACGTGCAGT
TGAGAGGCGACAAGCCTGTGAAACAAGAGAACAAAATTGATTGGTAATTT
TCGTATGGCTGTGGACAACAGACGAGAGGAAAAGTTGTGTTGTTGACATT
GAACCTGCAAAACAAAATTGACTCATTTTTTGAGCAGAA
Run BLAST on NCBI

transcript from alignment at sc0000023:892875..906099+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002836 ID=TCONS_00002836|Name=TCONS_00002836|organism=Clytia hemisphaerica|type=transcript|length=13225bp|location=Sequence derived from alignment at sc0000023:892875..906099+ (Clytia hemisphaerica)
tagcatagagaaaaaaaagaaggacAAAAAAGCAAACCACACCAAGCAGA CAAGCAGATACACACCACAATCCAGTTTCTTCTTATCTAGGTATTGATCT ATTGTAAGTCTatttattcaagaaaaaataCTTTACAAACTTTAGGTATA CATTTTGATTCACTAACTGTAGTAATaacggcaggtacaaaatgtataaa acataatgcagcaggaccctgccgacgcaccggaNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgacaatttctacaccgga cttaaggaagttggatgtccggtgtcggagaaggatattttttcccaccg gacaatcaaaacaccggacatgaccagtccagtgtttcttaattttttgt ttcataaatgtccggcgtccaaaattccctgtatgcaacaccggactgac accggacttattgtgtccggtgtagcgaaaggatactttttgccaccgga caaatacaccggacagtccggtgcgttggcagggtcctcatacgaccctc gacatggcccgagaattctcgggccaaaacttttattggaatttgctCGG GCCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNatttttttaacattttctttga gaaaaacttggtttctcttaattatattaaatatatgaatgttgtaaatt catataaatattaaatgtcttatttggtaggGAGacgataattacaaggt ctcaaaagaaggttgtctactgctcattccgacatcgactactaacctga ctgaaattcgagccgttactagcaaccctgcggggcccaaggcgccgagt atgcacccggcacagtgacaagccgttactagcaaccctgcggggcccaa ggcgccgagtatgcacccggcacagcgacaagccgttactagcaaccctg cggggcccaaggcgccgagtatgcacccggcacagtgacaagccgttact agcaaccctgaccctacctaactgttaccTAATCAAttctaaacaacaaa acccccggaaaatttaaaatgtcggaatgagcaatagacaaccttctttt gagaccttgtaattatacTTTCcctatttggtatgaaaacatagttataa atatacttagggtggaaatatttgctagttaactggtcctggttttaaac tgaagcgtgtccacgggaagctcgtaaagtttttttgagcgatataaaca aaacagacaaaccttattttgtactattttgtttgactggacatgctgaa tcaatttaacatttaacatggcccgaacatggcccgaatgactcgggtca tgttcgggctaaaagaattgatagggtctctcggcccgaacatggcccga agaggcccgagaattctcgggccatgttgAGGGTCGTGTCCTCATAAGGC TGATGGAAATTAATGATATGTTTACCGTAATGACGATTTTCAGAATTCGA TGTAGCtaagttttcattattcattattcattattttcccataaacattt atttttaccagatttttcgtTTCCTCTTGTGTCTCCGGAACTCTCGTGTT TTTATTGNNNNNNNNNNNNNNNNNNNNNNTGCggccaagttttcattatt cattattcattattttcccataaacatttatttttaccagatttttcgtT TCCTCTTGTGTCTCCGGAACTctcgtgtttttatttattcttttggTTAT CCCGTTTGTACGAGCTTAAAgagataaatctttttcttcccgctagagaa ttatataatgttatctccacaatatgacaaaattaaaCCCGGTAAAGACT ACTAGAGGGCCGTTCGGGTTGTTAACAATCTAAAAANNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTTTTCGA GAAAATggcaaataatgacaacttgatgcggcaggtttttgaacacgcgg gcggcttacggtaaacataacattaaattccatcggcctaatgcatattg cataatgcataatagagGCCCCCCAgtggacccaaatttcacgcattcac gcaaatttttttcgcaattcacgcattcacacaagTTTTTCTCGcaattc acgcaaacccaattttttggaaaatcgaggaaattttcggaaaaaattgg ggaaaatgtcaaaaatagaggtcttgcacatttcgctaagttacgtaatt tacgcAATTTCCGCtattatggagtaaaacgtttgatttgcataaaaaag tatgacaaggctgtactcaagatattattcgaccggatatggtcatgcac ttgagaaaaacttaactcagtagtgattttttcctgtagacctgactata aaacactGTGTTTGGTAGCGTGataagaagcccccaaatagaaagcgtta cgtaatttttcaactttaatcacatgccatcacacaaaatatttgaagct tCACCTTCTCCAaacgatcgtgacaagttagaagaTTGTCACGGTCGTTT GGAGaaggtgaagcttctgcagttaacgtatcgcgatagtaagtgaaaag atatgcgccgcaggcgaatttttgtacaaaaaatagcttaaacattatca aaaataagtcaaacaaactcgagtatgacaccatgatgcttagctcaggg gtaaggagACGCAACCATTgtttacgcagagaggaaatttttgcatttct gtcactcgcgtttggctaaaaatgctctctttaacaccattgaaaaagaa tgtagtctaaattcgttagaggcaaggtacgatcgcttgatagcttgtaa aatgaggtaaaagaatgaacatttgttgcgagcgaggcgatcaaaaaaat ttaaaaagaaaggttttaatcagggctcgcgaattaatttcctacGTGCg ccaggagaaaatttctattttaaccctctgatgtacttaaatacgactcc atttcagactaattttgccaagaacagaagcagccaacgagcccatttcc ccgaaatatctgtttcccttttccaggagagagctttttttgaaaaatgg ggaaacagatccgattttctaggagacaccttttccttaaaactatctgt ttccccgtcatcagagagaaacagatcaatatttctaggagatgacataa tcAGTTTATTAGCCGTCTTTTTTAATCTTTCTGTACACCGATCCCCAGCC GTCAGCAGTGATAGTTGTCTAGACCTAGAGTTGCATAGATAGAGTTGCAT ACTGTAGAAgtactgtgaagtcgggtaacttgaattagtggagggaaact tgcatagccatcaaatgactgaccaatcaaagcagcaaaatttcaaaaca aatgaactacgcagctgtTCAGGCCATGTTTTTGGAGGccaaaatctcaa attttgTGGCCTGAACTTAAAATGTTAGGATGAAATCATGTTTTGCATGT TTGGCTTTTCATAAAGTGCAGTGGCtgatctgagggggttcaaaattGTA ACAGAGAGTTATATTACAATTAGATTACATGGTTACGGAATTGAAAATCA TGTTTTGCTATTTTGGCCAGCAAAGTTTTCCTAGGAATGAGAAAGTTTGG CATCATTGTTTGTCTTCAATGAGATTGTTAGTTTGTTTCTCAAGCCTTAA TAATTTTACtatcattattttattttattattttaattttattaaacAAT GTTACCTTTAGAGGATTAAACAAATCTGAAAGACATAATAATCATGACAG AGATTGAAGAAAAAGCCACACCCACAGAAAACAAGTACTCAGATGACGAC CTTGGTATTCTATTAAAACATTACTACAAAAGGCTTTTTCCAACAAAACT CTACCATAAATGGTTACAGTATGGGGAAGGTAAGAAGAAGAaccaaagtt ttttttgggaTAGGCCTGATCTTTCTTTATCTGTAAACCATGTTTGCATA TTTAAGACTAATTCCCATGAGAGTGATTTCTCCACATGGTAATATAAAAA GTGTAAAGTGGCATCATGGATAGAATAGAAACtgctttttgttaatttta taCTTGAAGTGACATTTTTGAAAGCACATAATACACGACTAAAACTTAAA GTTTGGAGTAATCTGTTAATGTATTGTAagacaatagacgatatcggctt tcgataaatgcaatgcattctggtttctagggactctcaaaggaattatg atagatcaattataatagattataattcctttgagagtccctagaaacca gaatgcattgcatttatcgaaagccgatatcgtctattcctTTCTATCAC GAcagtaaaaaattttttttcaataacttGATTTTAGGAACAACCACATT TGAAAATCGCGAATTTTCATTTACTTTGAAAGATGATATTTACATTCGAT ATATGTCATTTGGGGATGCCTCTGATTTGGATAAAGAACTGCAAAAGAGA GTCCCATATAAAATTGATATTGGTGCTGTGTATAACCACAAGGTAAATAT GGCCTTGCTTCTTACTACCAACTGATTGAAAATACTTTTTCGGTGCCATA TTGGGTGAGCTCGTGAAAGATATATTCTAAACTCCAAGTGATGTTTGAAT TTTATTGTCGTAAGAATGCCAAAACAAAACGATCTTATTGTGATGATCTT tatttctttgttattttttatggGAATGCAAACTTTACAAATTTGGGATT TTCTTGAAATGTGTAAAATACATTGATCTTTATTAATTCATACAGATTCA TCTTTTATTTATAATTTCATCCATCAGCCTAAAGATAACAAGACTTTACA AGCAGGAGTATTCAAACCATTAGAAAAGGAATTAGTTTTTGATATTGATA TGACAGATTATGACGATGTCAGAACTTGTTGCAGGTATAAATCTTGATTT CTTTCTATCGATCCATTAGTCTCAATTCAATAATCAATTATATATCAACA CTCTCGAAAATTAGAAAAGTAACTTAAAAAGAAACCATATGACTTATGGC TCATACTCCATGACTCCAAACTATGATTTCAAGTGAGCCAGTCAACATGT CAGATCAGAGctattttttcttgaaatttgtaATTTTGGTTTGGAAAAGG AGCAATTTTGGTCAGGTAATGTTCTGTTTTCTGACCGATATTTCTAACCA TGCGTACTTTCATTTTTTAGCGGTGCAGCAATTTGTAAAAAGTGTTGGCC ATTCATGAATTTAGCAATAAAAATCATTGACAAAGTTCTTTCAGGTATTG ATTTTTAAATTGCAGCTGATAATCGTTTGAGTCTTTGCTTTGTATCTCCA ATCCATAAAGAAGCTAATCTTTCTGATTATCTTATACAAGAGGTTTGACA GAAAGCTAAATTTTCGACGTGGTTATCCAAACTTCGTTGTTATGATCTAC CTCGATCatgttcaaaaatagtgtgacatttagtGAActcaaaaatggac aaaaatatagtatttcttgaataacttgaaaaatatttcaaatataacgT TGAAATTTTATATGATGATCGGTATTTACACAAAGAACATATTTTGNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNGAAAAAATAAACGGTTAGCcaccaaaaatactcattttat taacataattgtcagccaactttgaaaatgtcacaaaacaggcctttatt tttgaacacgATCCCTCGCATCAGAAGTTCTATAAATTTACCACCTTTTA ACCACTGTTAGTCAGCTTTTATCTGCATCTGCTtattagattttctgatt tgtTGCAATACCTAGTTTTCAACAACTTTAGAAATATGCGGAAAAAGACT GCTTTtagagtttttttctgatttgcgTCATTGTTATTATGCAAATTATA AATGCCTGAAAATTTAAGCTCGCCAGCTTCCTCTTTACTTTTGTCCTTTT TTACATCAGTTGGTACAATCAGCCTTCAGTTTGTTGCTATTGTTTGTTAT TCTATTTTCTTAACTTTATTCCAGATGACTTTGGGTTTAAACACAGGCTA TGGGTATATTCAGGACGTCGTGGTGTCCATTGCTGGGTGGCAGATGAAAC GGCCAGGAAGTTGACACAAGCTGGTCGTTCAGCTGTTGCTGAGTATATCA ATGTCATAAAGGTTAGTATATTGAAAGGAGCAATGAAATTTCAATAGGAA AGGTCTTCAATTGCAAAAAAAACTCAATctaaaaaaatagacaaatcTCA AATTGTATGACTGTTAGCTTCGGTACTCTTAGGGTAGTTGtctgataaaa aaagaaataaaacgtAACAAGGGTGCATGGGCTCATCATACTTCTAATTT AGCCTTGCAAAGGGTTGTACTAATGATTACAAACTATGAATGGTTTTATA GGGAGGAGAGTCACAAAACAAGAAGGTTCAATTTCGAGGAACAAATCATG AACTGCACCCTTCACTCGAGTAAATTCTtttacctcgttttgaaacaCTG TAAAATCTAAAGATGAATTTTGAATTATTGTAATGTCATTTCTCAGTTAC GTTTTTGGCCTGGAAAGATCTGAATGTTACGTTTGATTTTCTcgtgttat attttgtttttcacGAGTAGTGTAATACGGCGTAATAAGGTTTTGTGACA AAGCATTATATTGGCTTATAAATTAGTATTACAACATAGCATTCATTGAC TTGTTCCTCCCTTGTGATTTCTATTCTTTGAAACTTTGATTTTATAGGCG TGCCAAAGCACACGtgacaaaatatttcaatgacAGTTATTTGactgacc aaaatattttggaaaatgaaGAGCAAAGAGAATTGATGTTGAAACTTATT CCTGATGAAAGTAAGAAGAGATAAGCAATCATTCTCTTAGCTTTGCAGTT GGGGTAGAGAGCGATATGTAAAAAGTTACAGACGGAACGATATCGAGAAA AAAGCCGTTTCCGTCTGGTAAAGAATCCAAACTAATTCGTTGTTCGAATT CCAAGCTCCCTCTGAGCTGAAGAACCACAGAAACAAGGAAGTGCAAGTAA GTAGTTTGATAACAATATAAGTAGTTTTGAGCTTTGTAGATGAACCACTC GATGCTTTGTTTTTTAGAAACAAGAAAGACAGTTAGTGAACAATGGGAAA AAATGGGATCAAGCGCGTCCACAGAAGAACTCTGGACATATCTTTCTCAA ACTGTGgaagaaaaacatttcaatGTAAGTTTGAACGTAGCTTGTTTGGG ATTCACCTGATTAGTCACCAAAACAAATGCCCTATGATCCTTTTCTGGGT GGGAGGttcaaaatttttgtatttttccctTTCAAGAGACATTGCCGGCA TATTTGAGTTTCGATTCCTTTTTTCCTCAATGTCAGCTTAAGACTCTCTT TCTAACTTTACGATACTTTACCTGTATCTCTGCTATTTTATGAGCTTAGC AATATGAATCCATTATATTAGTTGCCGAATGGTTAATTTGGGATCTCTAT TTGGTGACATGCTGCGGACTGTTAGTAcgcccccttttcacagacccagt aggatttttcaGCCGACGGGGTTAAAAATAAAGGACCAAAAGTCGATGGG GGTTGgcattcccatgttttttatggctggagattTTAATTCCATTGCTA CCGatccagaaaattcagtggggatggaaaaacaacacatttttttgcag tgaggattgcttatctgattattttcagtggagacAAGAATTAGAGTATA ATCTTCTACTGATGACAATACTTTGACCAATTTTTCGAGTGGAAAAGGAC GTCCTAGTGGGTCTGTAAGAAGAGGGTGTTGTTAAAGTCAAATTGAAATT TACCTTTATATTTACCCATTGAACTCTAGTATGCAATAGTCTGTCCCCTA GTACACATATCAAGTACTTCCGGGCTCTGCAATGATATACtataaaatat atattacaGAAACATATTGCAGACGAGATCATGTTTCAATATGTGTACCC AAGGCTTGATATCAACGTCAGCAAAGGATTGAACCATTTATTGAAAAGCC CATTCTGTATTCATCCCAAAACCGGTAATTCAACTTTTAAGATCTTTACT AATAATTATTAACATTATTGGAACGTGAACATTAATTCTGAAcgtgaaaa ttctttttgattgcTTGATAGATCTAGTAAGACAAATGGTTCTATGGATT TTTGTTTGTCAACATCTGTTACGCTTCTCTAGACAAAATGGATATTTATT TTTCTGGATAGGCCACTCCGTTTTTTATTACAGTGGCTGGGTAGCttagt cggtagagcattcgccttacaatccaaGGGTTGTGGGTGCGATCTCCGGT CACCACCAACTCAGCGAATTAGTAGCTTAGGTTGGGTAATCGgttctagg cggtaagttactaaAAGCTTTAAGCAGGtttggcgctccacctcagcatt cgatctcccaggtctagcgcaaatagaaaaggggatagactccctcactc ctgGTTCCACCGACACTTATATGAATATACATACTTTAATACTATTTAGA TATCACCAGTCTTTCTCTTCCCTGTGAAGTTTCGAATGAAAAATGGTGgc gaattttttattttaaatactGATCAGTATTTTTTCTCTTTAACAGGTCG AGTTTGCGTACCAATCAATCCGTCTAAAGTTGATGAGTTTGAGCCTGAAA AAGTTCCAACTATAAGGTTTGTTTGTTACGTTTTATATTTTGTACTCACt aagtatttttcaattttcgagatACTAACGATTTCTGTTTTTCCACTAGA CTAGAGTTTACTTGGCATATTAACCCATTAAATATTATCACTctgtaaat tcaatttttcaaatatatttcgATTTCAAATGCGCTCATAAACCCTAACT TTAAGAAAAAAATGcagaatttagattttttttttattcggGCAGGGTAA AAAAAACTGGGCGGCACGGGTCGTGGTGCTTCTAGCTCCAGTCTTACTGG TAAAGAACCGAAAGAAAGCCAAAACCGATCTCATATGATTCTAATGGTAC TCAATGGGTTAAGTACTGAATATCCAGttgattttatcatttttcatgtT AGCCCAATCTGCACCTAGCTAGACCGAGATAGAAACATctcactatgtca aaataggtACAAGACATTCAAATCCCCTTCGCTTTCAGAAATATAGAGGA GGGCTTGAGGGACGTTAGcgctagtttagacggccgactttctgcacACT TCAATTCACAAAACTTAGAATTGGCAGAAAGTCGGCTGTCTCAACTAGGA ATTATCCCCCCTCCCTTCTCGTCTTAGGACTTTTTCTTAGCGAATTTTGC CTGAACCCACATAAATTATAATATCTTATCCTTGAATTTGTTTAGTCAAT TGATGGAAGAATTAGATGAAGCGAAGAAATTAAGCGATGGAAATACTCAA GATACGAAAGACTCTAAAGGTTCGTATCTTTAGTAATTGATATAATCCAT ACATAACTTTCTCTTACTTTAGACGTGGTGGGTCCTCAGAGCAAAACGTG AATTTCtactacagtggagtctctttaactcgaatgttCCCTAATTCGAG CAAGTTtgctggtcccttcagttaacattGCTTTATAAAACCTTACTTAA TAAcccgaaatttccttaactcgaacaaattggTGTTCccttgcgtgttc gagttatggagactccaaaTGTAGTACTCGAATTAATCTCGAATTgcagt gcagtggtagagcactcggctacggttcgcaaagTTGTGGGTAAACccag ctgggtcataccaaagattctcaaaatggtacttcgTGCCTCTCTGcatg atgctcagcaattaagagacgAATTGAGGGtgagtggagcaatccaggga gaaaaaaTGATgacctcccctaccttcgggtagatagctatcgaaagagg agccttcgggtcgcctccgactgcggtcgcaggcTTACTTAGTACTCGAA TAGTTTgtgtttcattttggtaaaataaaAGTTTGAACTATAAGGCACAT TTCAATTTGATTTAAACATTGACAGCCCGTTTGACAGACATACATCGAAA ATAATCCGATGAATTATCTCACCTGACATGTCTTACCACGAGACATGATT GTGACGTCTATTACACACCCACTTCTGTCATGTTGTTTCCTTCTGTTGAC TAGGTAATCAAATATTTTCTCGATATATCAAAGGAGAGTTGCCTTAGTGT GTTCATTTCTAAATGTAATAAGACTCTTTTGGCTGTTTACATGTATGGGA AGAAGTCTCAAGTTATCCTTCCTTCAATATCAAGATTTTTCTCACGGGTG CTGAATACGTGTTAAACGATTAAAAATGTGAAACCATGTttcctctataa ctcgaatttctCGGACATGATTCTGATCCTTTCTAGCacgtctctataac tcgaattttcCATAACTTGAACAAATCCTGCGTTTCCCATGTTCGAGCTA TTAGAAACTCCATAGTAGTGTTTTTCAAGGCAGAACCGGCGCTTTTTGAA CTCATAACAATGAGTCATGTAATGTTTTCCACTACAAGTTTTGAACTTgg tattatcatttttattatGACATATTGTTTGAAACATGATCTGTTTGTAA GATAATATGACAAATGAGTCATTGTAACATAACAATTGGATTTACATATT ATCTTTACTCTGCATATCTTGCTCTTACGTGAAGCATCATAGACtcctac atgttttttatacaaaaagacaAACAAATATTTCGACTGACCCATAGTAG TGAATTAACCACTTTAACCAAATTAATCACTTCCAGACGCTAATCGTACC TACCCGACATTTGTTATCTAAAGAGTTGATAAAAGATTTTCCTACTGTGT TTTGACTTTAACTACGTGTGTCGTCTTAATTTAATACTAATACCTCCTTA GTCTTCTTTGATCTTTCATTATGTTTATAATTTcttgtcttttcttttta ttagaaTACATGTCTACATCATTGCGTGATAGCATTGTACTCTTCAAGAA ATTCGTCACTAGTCTTGACGTGCAGTTGAGAGGCGACAAGCCTGTGAAAC AAGGTATGTTTTCTCAGTACAacagaaatcttttttcttaCCCCGAATTT CTATGACATTTTAATGTCATAGAACTGACAAGTGACAGACCAACGTGTTT TATTGATCTCTTAGATGTTTAATGTGTTTTGCCCTTTCTTCCAGACTCAT TCTTTTTATCCAATTCGTGATCGTTTTATGGTCAGAAGCAAGAGAGATAT TTTataaatatgtgttcttatcttctaggagaccacatgTCATGAccccg gggggtacttaggcaaatggagggtatggtatgtgctgcccttaagggta ccttttttggatttccaaagtcccgctaagggtcggaaaaatcagaaatt caaatttcagtcccactaagggttggaaaaataggaaaatttcaattttt tagccTCGGAAAGATAgtaatttgatcaaaattggtcaaattagtcgcgc taagggtcgtaaattcccaaaattttactttgttttctcctttttagtcc cggtaatgGTCCAAAGGTCGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAggaatgcactgtaagg gtggacttttgataaatgcactgtaagggtggaaatttcagcaaatctgg gaaaaattgcaaatttttgctcaaaaatcttgatttttttttgctctaaa agagtttaaaatttttttcgccgcacatttCGTCAGtaggtaaacccact gccccgggttatgaccttcaattttcttatacaaatgAAGTGTTCTGGTT TCTAGGAAACTTTTATtgcactatttgtctccctaaacttattaCTACTT TTATCGTTGGATGTGTTATAAAATTTaggaaataaatttttctaagatat acttgtaagatatttgtttttttttcacaaaagatgtgttctgaaaattt ctagggttgCTAGGTAACAAGAACACGTTtgatgaccttgattatacccc tgtctcgtcagaacacatcattatttctagctgattaatttttgaAGATC TTATCAGAACAGATAAATATTTCTAGGTGAAACATACTCTCaaaacacat cggaaaaaaggtcgcctcgccggctgctttcgtatGGTTATTAGAAGGTG CAAATATCGCCATGGTGACCGACAATTTTCCCCATAAAAGTTTGGTCACC TCACTTTAGAACATTTTATTGTAAACATAACAGTACTCAAACGATTTCCT TTTTTCACTTTAGAGAACAAAATTGATTGGTAATTTTCGTATGGCTGTGG ACAACAGACGAGAGGAAAAGTTGTGTTGTTGACATTGAACCTGCAAAACA AAATTGACTCATTTTTTGAGCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001547XLOC_001547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002836-exon-sc0000023-1491911889:892875..892964TCONS_00002836-exon-sc0000023-1491911889:892875..892964Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:892875..892964TCONS_00002836-exon-sc0000023-1510915933:892875..892964Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:892875..892964TCONS_00002836-exon-sc0000023-1575043694:892875..892964Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:897086..897253TCONS_00002836-exon-sc0000023-1491911889:897086..897253Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:897086..897253TCONS_00002836-exon-sc0000023-1510915933:897086..897253Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:897086..897253TCONS_00002836-exon-sc0000023-1575043694:897086..897253Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:897712..897866TCONS_00002836-exon-sc0000023-1491911889:897712..897866Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:897712..897866TCONS_00002836-exon-sc0000023-1510915933:897712..897866Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:897712..897866TCONS_00002836-exon-sc0000023-1575043694:897712..897866Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:898152..898258TCONS_00002836-exon-sc0000023-1491911889:898152..898258Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:898152..898258TCONS_00002836-exon-sc0000023-1510915933:898152..898258Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:898152..898258TCONS_00002836-exon-sc0000023-1575043694:898152..898258Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:898545..898618TCONS_00002836-exon-sc0000023-1491911889:898545..898618Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:898545..898618TCONS_00002836-exon-sc0000023-1510915933:898545..898618Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:898545..898618TCONS_00002836-exon-sc0000023-1575043694:898545..898618Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:899449..899585TCONS_00002836-exon-sc0000023-1491911889:899449..899585Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:899449..899585TCONS_00002836-exon-sc0000023-1510915933:899449..899585Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:899449..899585TCONS_00002836-exon-sc0000023-1575043694:899449..899585Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:899826..899893TCONS_00002836-exon-sc0000023-1491911889:899826..899893Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:899826..899893TCONS_00002836-exon-sc0000023-1510915933:899826..899893Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:899826..899893TCONS_00002836-exon-sc0000023-1575043694:899826..899893Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:900172..900284TCONS_00002836-exon-sc0000023-1491911889:900172..900284Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:900172..900284TCONS_00002836-exon-sc0000023-1510915933:900172..900284Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:900172..900284TCONS_00002836-exon-sc0000023-1575043694:900172..900284Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:900542..900648TCONS_00002836-exon-sc0000023-1491911889:900542..900648Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:900542..900648TCONS_00002836-exon-sc0000023-1510915933:900542..900648Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:900542..900648TCONS_00002836-exon-sc0000023-1575043694:900542..900648Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:901384..901498TCONS_00002836-exon-sc0000023-1491911889:901384..901498Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:901384..901498TCONS_00002836-exon-sc0000023-1510915933:901384..901498Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:901384..901498TCONS_00002836-exon-sc0000023-1575043694:901384..901498Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:902071..902140TCONS_00002836-exon-sc0000023-1491911889:902071..902140Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:902071..902140TCONS_00002836-exon-sc0000023-1510915933:902071..902140Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:902071..902140TCONS_00002836-exon-sc0000023-1575043694:902071..902140Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:902820..902893TCONS_00002836-exon-sc0000023-1491911889:902820..902893Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:902820..902893TCONS_00002836-exon-sc0000023-1510915933:902820..902893Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:902820..902893TCONS_00002836-exon-sc0000023-1575043694:902820..902893Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:904429..904527TCONS_00002836-exon-sc0000023-1491911889:904429..904527Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:904429..904527TCONS_00002836-exon-sc0000023-1510915933:904429..904527Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:904429..904527TCONS_00002836-exon-sc0000023-1575043694:904429..904527Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1491911889:905988..906099TCONS_00002836-exon-sc0000023-1491911889:905988..906099Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1510915933:905988..906099TCONS_00002836-exon-sc0000023-1510915933:905988..906099Clytia hemisphaericaexon
TCONS_00002836-exon-sc0000023-1575043694:905988..906099TCONS_00002836-exon-sc0000023-1575043694:905988..906099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:892875..906099 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
98.0371 98.4166 133.031 137.49 98.1322 82.8362 55.8591 62.6624 56.8474 42.9428 43.5628 32.168 23.2904 21.2465 29.1158 28.3393 41.5501 41.2508 9.01321 13.7699 25.66 28.9511 43.9793 46.5697 43.171 43.3052 21.8941 14.3197 2.03323 8.46807
Blast
BLAST of TCONS_00002836 vs. Swiss-Prot (Human)
Match: PRI1 (DNA primase small subunit OS=Homo sapiens GN=PRIM1 PE=1 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 3.178e-133
Identity = 200/412 (48.54%), Postives = 275/412 (66.75%), Query Frame = 3
Query:  177 DLGILLKHYYKRLFPTKLYHKWLQYGEGTTT-FENREFSFTLKDDIYIRYMSFGDASDLDKELQKRVPYKIDIGAVYNHKPKDNKTLQAGVFKPLEKELVFDIDMTDYDDVRTCCSGAAICKKCWPFMNLAIKIIDKVLSDDFGFKHRLWVYSGRRGVHCWVADETARKLTQAGRSAVAEYINVIKGGESQNKKVQFRGTNHELHPSLERAKAHVTKYFNDSYLTDQNILENEEQRELMLKLIPD----------EKTRKTVSEQWEKMGSSASTEELWTYLSQTVEEKHFNKHIADEIMFQYVYPRLDINVSKGLNHLLKSPFCIHPKTGRVCVPINPSKVDEFEPEKVPTISQLMEELDEAKKLSDGNTQDTKDS------KEYMSTSLRDSIVLFKKFVTSLDVQLRGD 1361
            +L  LLK YY+RLFP   Y++WL YG      F++REFSFTLKDDIYIRY SF + SDL+KE+QK  PYKIDIGAVY+H+P  + T++ G F+  EKELVFDIDMTDYDDVR CCS A IC KCW  M +AI+IID+ L +DFGFKHRLWVYSGRRGVHCWV DE+ RKL+ A RS + EY++++KGG+   KKV     + ++HP + ++   + KYF +  L +Q+ILEN+E  + +L L+P+          +K+  ++ ++WE +   AS  +        ++   +   +  EIM QY +PRLDINVSKG+NHLLKSPF +HPKTGR+ VPI+  KVD+F+P  VPTIS +  ELD      +   ++  +S      ++Y  TSL   + +F+ F+ +LD   +G+
Sbjct:    8 ELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHL---SEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIHDELQQSFQKSHNSL-QRWEHLKKVASRYQ------NNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGE 409          
The following BLAST results are available for this feature:
BLAST of TCONS_00002836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRI13.178e-13348.54DNA primase small subunit OS=Homo sapiens GN=PRIM1... [more]
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