TCONS_00002828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002828
Unique NameTCONS_00002828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1013

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002828 ID=TCONS_00002828|Name=TCONS_00002828|organism=Clytia hemisphaerica|type=transcript|length=1013bp
AACTAgttggagggtttagaacgcCATCATGTAAAATACCAGCAACACTA
ATATTAGTTTCTATATCTTTGATCTCTACGGAACGAAGTTTTTGTAGTCC
CATTTCAACAAAACGATTCTCTATTTCCTCATCCCATTCTAATTTCAGAT
GAGATTTGGAAAACGTTTTGTAAGCCAATCGGATTTCAACAAAGGTGCTG
GTTATGTTTGAAAAAAGCAGCGATGTCAGATTTCGAGCTTGACTTAATTT
CTTTGAACCATGATACATCACTTGATATTGTATGGGAACTTTCAGTTCAC
GTTCTATGAATTTCATCAAGTCGGCAGTATCACAATTTCTGTTATTAGGA
TGCCAGCAGGCGAGCTCTTTGCCTTGGGTCGTTATAATTTTTATAAACGG
AAGGAGTAGAAAATTCGATTGCTCTACATGATTGCCAAGAAAGTTTTGAT
CAGAGCTATTGGGATTGTATTTCCCAAGTTTAACATTTAACGTTTTTGAC
CGATAACCATAGTCGTTTAAGATTGCCATCCATTGAAAGGTGTTAGTTAT
GACTGTCTTCTCCGTTGAACTTTTGACGTACAgaaacaaatagtcatcaa
atgcTATCTTCACTCTATCTTCAATCATTTTCTTAAACGCAGTAAATGTG
CAGATCTCGAGATTATTTTGAAAGTCATCATATCCGATTTCGATAGCATT
GGTCTGTGTATCCTGCCAAGGACCGTGGTTCGACAAAACTTTAATTTGTG
GGAAGATGAATGTTTTCTCCATTTGGTGCGCACAAGGTGGAGATGAacga
ttttctttgattacaAGACATCGAAGGGTAATCGAATCTGATTCGTTGTC
AATTTTGCAAACTACATCTTTATCCATTAGAACTTTTAAGTCATCTCCAA
TTTTCCTAAGGATAACTAGATTCTCCAGTGGAACATGCCTGGTAACGCCA
ATGCAACGCTTGATGTCTTTTATGGTTGCATTCTTTTCTAAGGAGCAAAT
TTCAATCTCATTT
Run BLAST on NCBI

transcript from alignment at sc0000023:797447..798568+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002828 ID=TCONS_00002828|Name=TCONS_00002828|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at sc0000023:797447..798568+ (Clytia hemisphaerica)
AACTAgttggagggtttagaacgcCATCATGTAAAATACCAGCAACACTA ATATTAGTTTCTATATCTTTGATCTCTACGGAACGAAGTTTTTGTAGTCC CATTTCAACAAAACGATTCTCTATTTCCTCATCCCATTCTAATTTCAGAT GAGATTTGGAAAACGTTTTGTAAGCCAATCGGATTTCAACAAAGGTGCTG GTTATGTTTGAAAAAAGCAGCGATGTCAGATTTCGAGCTTGACTTAATTT CTTTGAACCATGATACATCACTTGATACTGTANTAACAAAGGTACTGGTT ATGTTTGAAAAAAGCAGCGATGTCAGATTTCGAGCTTGgcttaaattttt tgaagcatGATACATCACTTGATACATCACTTGATATTGTATGGGAACTT TCAGTTCACGTTCTATGAATTTCATCAAGTCGGCAGTATCACAATTTCTG TTATTAGGATGCCAGCAGGCGAGCTCTTTGCCTTGGGTCGTTATAATTTT TATAAACGGAAGGAGTAGAAAATTCGATTGCTCTACATGATTGCCAAGAA AGTTTTGATCAGAGCTATTGGGATTGTATTTCCCAAGTTTAACATTTAAC GTTTTTGACCGATAACCATAGTCGTTTAAGATTGCCATCCATTGAAAGGT GTTAGTTATGACTGTCTTCTCCGTTGAACTTTTGACGTACAgaaacaaat agtcatcaaatgcTATCTTCACTCTATCTTCAATCATTTTCTTAAACGCA GTAAATGTGCAGATCTCGAGATTATTTTGAAAGTCATCATATCCGATTTC GATAGCATTGGTCTGTGTATCCTGCCAAGGACCGTGGTTCGACAAAACTT TAATTTGTGGGAAGATGAATGTTTTCTCCATTTGGTGCGCACAAGGTGGA GATGAacgattttctttgattacaAGACATCGAAGGGTAATCGAATCTGA TTCGTTGTCAATTTTGCAAACTACATCTTTATCCATTAGAACTTTTAAGT CATCTCCAATTTTCCTAAGGATAACTAGATTCTCCAGTGGAACATGCCTG GTAACGCCAATGCAACGCTTGATGTCTTTTATGGTTGCATTCTTTTCTAA GGAGCAAATTTCAATCTCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001543XLOC_001543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002828-exon-sc0000023-1491911889:797447..797712TCONS_00002828-exon-sc0000023-1491911889:797447..797712Clytia hemisphaericaexon
TCONS_00002828-exon-sc0000023-1510915933:797447..797712TCONS_00002828-exon-sc0000023-1510915933:797447..797712Clytia hemisphaericaexon
TCONS_00002828-exon-sc0000023-1575043694:797447..797712TCONS_00002828-exon-sc0000023-1575043694:797447..797712Clytia hemisphaericaexon
TCONS_00002828-exon-sc0000023-1491911889:797822..798568TCONS_00002828-exon-sc0000023-1491911889:797822..798568Clytia hemisphaericaexon
TCONS_00002828-exon-sc0000023-1510915933:797822..798568TCONS_00002828-exon-sc0000023-1510915933:797822..798568Clytia hemisphaericaexon
TCONS_00002828-exon-sc0000023-1575043694:797822..798568TCONS_00002828-exon-sc0000023-1575043694:797822..798568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:797447..798568 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0441265 0.0860607 0.499623 0.342162 7.97395 7.0535 4.82219 5.47048 1.18991 3.50049 4.20237 1.49879 3.49231 1.55434 0.626413 1.85537 0.695638 1.45997 3.65878 3.63231 0.810617 0.37458 0.961298 0.827962 1.27917 1.81815 3.99341 4.90762 0.097954 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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