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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002801 ID=TCONS_00002801|Name=TCONS_00002801|organism=Clytia hemisphaerica|type=transcript|length=3658bpRun BLAST on NCBI protein sequence of TCONS_00002801-protein >TCONS_00002801-protein ID=TCONS_00002801-protein|Name=TCONS_00002801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=890bp MSDEPGTPERRGGESPRTGVVTSSPGRDDLAPFEDETDALLGNEAPDEEERun BLAST on NCBI transcript from alignment at sc0000023:329499..367006+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002801 ID=TCONS_00002801|Name=TCONS_00002801|organism=Clytia hemisphaerica|type=transcript|length=37508bp|location=Sequence derived from alignment at sc0000023:329499..367006+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:329499..367006+ >TCONS_00002801 ID=TCONS_00002801|Name=TCONS_00002801|organism=Clytia hemisphaerica|type=CDS|length=42768bp|location=Sequence derived from alignment at sc0000023:329499..367006+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002801 vs. Swiss-Prot (Human)
Match: MCM2 (DNA replication licensing factor MCM2 OS=Homo sapiens GN=MCM2 PE=1 SV=4) HSP 1 Score: 1237.63 bits (3201), Expect = 0.000e+0 Identity = 642/916 (70.09%), Postives = 746/916 (81.44%), Query Frame = 3
Query: 240 LNQKSNPGTMSDEPGTPERRGGESP----------RTGVVTSSPGRDDLAPFEDETDALLXXXXXXXXXXXXXXXXXXXXXNDYRPIPQLDTYDQS--ILDDEDQSELSVDGRVEAERAMRKRDREDGFAGGRMRRGLLYDESEEDEAAEPTXXXXXXXXXXXXXXXXXXXXXXXMIESIENLEDMKGHSVREWVSLAAPRLEIKNRFKQFLKTFCDERGENVYRTKIKQMCENNKQSLTVDYNTLANEHQVLAYFLPEAPAEMLKIFDEAAKEVVLSMFKNYERIAPDIHVRVSELPLMEDLRSLRQLHLNQLIRTGGVVTCSSGILPQLNMVKYDCVKCRFVLGPFFQGQNQELKPGSCPQCQSRGPFEINMEQTLYQNYQKIKIQESPSKVAAGRLPRSKDVVLLADLVDACKPGDEIEVTGIYRNNYDGSLNTANGFPVFATVIEANHVTKQDDKMAVTNLTDEDVREIIKLSKDEKIADRIMASIAPSIYGHDDIKRGIALALFGGVPKNPGGKHKLRGDINILLCGDPGTAKSQFLKYLEKTAIRPVFTTGQGASAVGLTAYVQRHPVTKEWTLEAGALVLADRGVCLIDEFDKMNDADRTSIHEAMEQQSISISKAGIVTSLQARCSIIAAANPIGGRYDASLTFAENVDLTEPILSRFDILCVVRDVVDPVQDEMLARFVVGSHVRHHPN-----GLXXXXXXXXXXXNTAGESKVEQLSQEMLKKYIIYAKDKVTPNLLNMDQDKVSKMFASLRRESMITGSIPITVRHIESMIRMSEAHARMHLREYVHEDDVNMAIRVMLESFIDTQKFSVMRNMKKTFASYLSFKRDNNELLLFVLKQLVRDQVSYYKNRYRSEPDXXXXXXXDFMERARQINIHSLATFYESPLFTSNRFTHDKKRKCVIQNL 2936
+ + S TM+ P +RR G P RT +TSSPGRD L PFEDE++ LLG E P EEE DGEEL GD ME DYR IP+LD Y+ LDDED EL+ R AERAMR+RDRE G GRMRRGLLYD EEDE R R + E ++D+EMIESIENLED+KGHSVREWVS+A PRLEI +RFK FL+T D G NV++ +I MC+ N++SL V+Y LA VLAYFLPEAPAE+L+IFDEAA EVVL+M+ Y+RI IHVR+S LPL+E+LRSLRQLHLNQLIRT GVVT +G+LPQL+MVKY+C KC FVLGPF Q QNQE+KPGSCP+CQS GPFE+NME+T+YQNYQ+I+IQESP KVAAGRLPRSKD +LLADLVD+CKPGDEIE+TGIY NNYDGSLNTANGFPVFATVI ANHV K+D+K+AV LTDEDV+ I LSKD++I ++I ASIAPSIYGH+DIKRG+ALALFGG PKNPGGKHK+RGDIN+LLCGDPGTAKSQFLKY+EK + R +FTTGQGASAVGLTAYVQRHPV++EWTLEAGALVLADRGVCLIDEFDKMND DRTSIHEAMEQQSISISKAGIVTSLQARC++IAAANPIGGRYD SLTF+ENVDLTEPI+SRFDILCVVRD VDPVQDEMLARFVVGSHVRHHP+ GL + + NT G VE L QE+LKKYIIYAK++V P L MDQDKV+KM++ LR+ESM TGSIPITVRHIESMIRM+EAHAR+HLR+YV EDDVNMAIRVMLESFIDTQKFSVMR+M+KTFA YLSF+RDNNELLLF+LKQLV +QV+Y +NR+ ++ D IE+ E+D +++ARQINIH+L+ FY+S LF N+F+HD KRK ++Q
Sbjct: 1 MAESSESFTMASSPA--QRRRGNDPLTSSPGRSSRRTDALTSSPGRD-LPPFEDESEGLLGTEGPLEEEEDGEELIGDGMERDYRAIPELDAYEAEGLALDDEDVEELTASQREAAERAMRQRDREAGRGLGRMRRGLLYDSDEEDE------ERPARKRRQVERATEDGEEDEEMIESIENLEDLKGHSVREWVSMAGPRLEIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRESLVVNYEDLAAREHVLAYFLPEAPAELLQIFDEAALEVVLAMYPKYDRITNHIHVRISHLPLVEELRSLRQLHLNQLIRTSGVVTSCTGVLPQLSMVKYNCNKCNFVLGPFCQSQNQEVKPGSCPECQSAGPFEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGIYHNNYDGSLNTANGFPVFATVILANHVAKKDNKVAVGELTDEDVKMITSLSKDQQIGEKIFASIAPSIYGHEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKYIEKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIISRFDILCVVRDTVDPVQDEMLARFVVGSHVRHHPSNKEEEGLANGSAAEPAMPNTYG---VEPLPQEVLKKYIIYAKERVHPKLNQMDQDKVAKMYSDLRKESMATGSIPITVRHIESMIRMAEAHARIHLRDYVIEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFARYLSFRRDNNELLLFILKQLVAEQVTYQRNRFGAQQDTIEVPEKDLVDKARQINIHNLSAFYDSELFRMNKFSHDLKRKMILQQF 904 The following BLAST results are available for this feature:
BLAST of TCONS_00002801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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