TCONS_00002800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002800
Unique NameTCONS_00002800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002800 ID=TCONS_00002800|Name=TCONS_00002800|organism=Clytia hemisphaerica|type=transcript|length=1787bp
caataatgaTACAGTTGAATCTGAAGAAAAAGAACAACACCACCACCACA
GAGAGATAATTGCACCTGACCCGTCGAGTCTTCCCTATCTGCTGCTTGAT
ATACGTGACAGTGATGCTTTTGAAGAAGGACATATTATCGGAGcCATCAA
CTATCCATCAGCAATGTTAAATAGGACAGTTAATTATCTCTCCAAAGAAA
TATGCGCATTCGTAtctttttcaaatcattttcacACACTTTAATCTGAT
TTGTAACAGCTACTACACCGACTttcaaacgtcataattattagatAACC
TTTCTATAGAAACTTAAATTCAAGCCTTCGGCGATTCAGTGTTTGGCCCC
AAACCAGGTAGATTAGAATGATCAACAATATTGTTGAGATTTGCCTATAT
AGCTTCTTAAAAGTTGGCTATTTGTCCTCCCTGATGTTCAAGTTTTTTTT
CCTTGACAATCAAATGTTCACACGATAGAAAAACAAACCTGGGAAAATAA
TAATTGTTTACGACGATGACGAAAAGCTTGCTCCACAAGTCGCCACCTCG
CTTTtacaaaaagatgttgaaaatgtCATTATGCTGTCAGGAGgaaTGAA
AGTTTTACACAAGAAATTTCCATCTTGTTTCATCACGGGGACAGTACCTT
CCACTTGTTTCTCACCAAAGACAGACCGCAAAGGGAAATTGAAACCACCT
CCAAAAGTCATTTCAAATATAGGAGTGGAATGGTACACACCAGAACTGTT
AGAATCAATTCAAGAGCATCTGGATGAAGTCCTTCTCAGTAACGAGTCAA
GTCGAATGTCTTCACGTACTACCACACGAAATAGTAAAGTTTCATCCGCT
CGCTCCAGCGTTCCATCAACTGCTTCAAGCTATCGCTGACGAGTTTAATC
AATTATGTTGTTTTAAACACAGAATATCCCTAGCACAGACAATTTAGCAA
CTTGACATTGGATTTTTCCGTGACCTTATACGCTTTGTAATTATcttcct
ttcaattttttttcgaaatgtcGTCATGGAACGTTAGTTTGGGACTAAAG
CCTGATTTGGTATATTATTCAACTAAATTCAACTAGCAGCAAAAATCCtg
aacatttttaattttggcgtgaataaattttaaagaatggtcaaactttt
taattttgccgaatGACAGACTGAATCTGTTCTATTTTTGGGGAATTTTG
TCTAAACTCGCCATGTTCACCAGAATTAGCTCTCACCAAAATTATGTTCC
CTTAATGTACGACAAGGAATTACCAGAGCTTGTTGATGAACTATAAAACC
CCTCTAATTTGTCTTTACCGAAAAAGGACGAGATGTTTcgtgttttattt
tttgtttaataattttatgtttttgtgaTTTCCTATAAGGTTTCTGGAAA
ATTTTTCGATGTTTTAAATACTCAAATTTTTCTCCATGAGGAAAGATATT
TAcgaaatagaaaaaagaaattcgaaaaatattattaaagtTTATGCCTT
GACTCAACTCAAGCAATGGCAACGTTAACAATGGTAAATCCTCATATGAC
GTCACGACGTGGaaaaaatcgtcaattttttcAGGCACCATTTagcttta
ttttaagaaaatagaaaaagaaaatatttgtttttatttactgGAAATAG
TATCCTTGTAAAATTGtattaaaattattattataaatgttcatttcttt
tttataattattatatACACCATTTTTACTAATGCTGAATACATTTGAAA
ACGatttaaaataaagaaatataaattgacaaaagag
Run BLAST on NCBI

transcript from alignment at sc0000023:194371..200099+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002800 ID=TCONS_00002800|Name=TCONS_00002800|organism=Clytia hemisphaerica|type=transcript|length=5729bp|location=Sequence derived from alignment at sc0000023:194371..200099+ (Clytia hemisphaerica)
caataatgaTACAGTTGAATCTGAAGAAAAAGAACAACACCACCACCACA
GAGAGATAATTGCACCTGACCCGTCGAGTCTTCCCTATCTGCTGCTTGAT
ATACGTGACAGTGATGCTTTTGAAGAAGGACATATTATCGGAGGTAAAAA
TCCCTTTATCACCCTgacaaatccgccaaattttctctccgccaaaattt
cttcccataAGGTAATTCATACTTCTTAGAATTTTCGATTAAAACAATCA
TTTCAAGGTGAAAAAGAATCAAGTTTTACCCtgacttttatcaaaattag
tTCGACGGCGTTCTAAATCCATTCTCACTAAATTCTAAAACATTTGTGCC
TTTCTAAGTCCATCGCCAAATTCAATAACTTTTAGCATTTTTACTTCTCg
acaaaattagttccctcaaGGTTTTAATGATTGATTACCCtgacaaaaag
acaaaaaaatctcTTGCGTTGAAGTTTTAATTTAAAATGttcctttcttt
ttatttctagcCATCAACTATCCATCAGCAATGTTAAATAGGACAGTTAA
TTATCTCTCCAAAGAAATATGCGCATTCGTAtctttttcaaatcattttc
acACACTTTAATCTGATTTGTAACAGCTACTACACCGACTttcaaacgtc
ataattattagatAACCTTTCTATAGAAACTTAAATTCAAGCCTTCGGCG
ATTCAGTGTTTGGCCCCAAACCAGGTAGATTAGAATGATCAACAATATTG
TTGAGATTTGCCTATATAGCTTCTTAAAAGTTGGCTATTTGTCCTCCCTG
ATGTTCAAGTTTTTTTTCCTTGACAATCAAATGTTCACACGATAGAAAAA
CAAACCTGGGAAAATAATAATTGTTTACGACGATGACGAAAAGCTTGCTC
CACAAGTCGCCACCTCGCTTTtacaaaaagatgttgaaaatgtCATTATG
CTGTCAGGAGGTTAGTTAGTTCGTGGCTTGTCACTTACAATAATGATACG
AAGATCAGAGGGTTTTCAAACAACCCTATATAGGTTCCTTTAGCTTTTCA
CTTTTTGTAATCTTTAGTTCTTGACCAAAAGGTTTGGGTTAAAAGTTTGA
ATACAGAGggggtcaaaatttaaaaatttatttctNCCTCGTTGTtacaa
aaagatgttgaaaatgtCATTATGCTGTCAGGAGGTTAGTTAGTTCGTGG
CTCGTCACTTACAATAATGATACGAAGATCAGAGGGTTTTCAAACAACCC
TATAAGTTCCTTTGGTTTCACTTTTTGTAATCTTTAGTTCTTGATCAAAA
TTTGGGTTAAAAAGTTTGAATACAGAGGGGGTCAGAATTGAAAAACTTAT
CTCCAAACACCTCAAAAGGTGAACAAGATaaatattctcaaaaataaGTA
AACGGGGATCTTAACGAGGTCTAGTTCAGGAATTCAGTTTTATTATTCAA
GATCGATTTTCTCGCCACCTCATTGACACCCTTTCTGCCCGCAGAGGGTT
TTCTGAAATCGTATCTCACCAGAGCAAttcattgtttttaatttttagga
aTGAAAGTTTTACACAAGAAATTTCCATCTTGTTTCATCACGGGGACAGT
ACCTTCCACTTGTTTCTCACCAAAGACAGACCGCAAAGGGAAATTGAAAC
CACCTCCAAAAGTCATTTCAAATATAGGAGTGGAATGGTACACACCAGAA
CGTatctttttcaaatgaaatattACTTCACTTTGTTAAGTTTTTATTTG
GACCCACTGACTTCTTTTCTTCTCCACAGGATAGTTTTTTTCCTCGTGAA
ATTTCTCGAGAGATAAAGTAACGCAATTGTACAgaacattttgaatttga
ttagTTTTTTATCAGTAGAACTTCacgtatctcctaccatttgcttacat
aacacttttaaacaaaagaaaaagatcaacATCCATCCCTTCCTGTTCTT
CAAATAAGTCCAAATAGGTCCATTATATTTTATACACGTAAAGGggttgg
acgaacatttccagggggtaattcgaagaagaatttccagagagaaagtt
ttttattcttccaggaggtaaaaagttattttcaattttccagaGAATAA
AAGGCTGATTTTAGTTCATCAACCCTTACTTTTAGGTATGAACTTTTCCA
AGGGGTGTTTTGGCAAATTTGCTATTTTCCAGGGGCATCCAGGTGTCTTC
AAGAATTATCTTTGGCTTGAAAATTTTCGTCCACCTGCACGAATGGACTT
TAAATGGTATGCCCTTTAGAATACCTTATAAAAACTGACAAGTTGTGTAA
TGCGGAAATTGATAAATCGGACTCGTGTGAAAACTGATATCCCAGGGTGG
GACACTCGTTTCGTTTTTCTCACGGATGCGAAATCGTAAATAACACCCTT
AGTGTTTACACTATGTTGCATTGAGTATCAGACTAAAACATctcaaattt
ataatttaaGTCAGATTATGATTGTAGATTGAGCGTTAAGTTTGATAATT
GATTCGACAAGGTGTAAACACTTGTCAATTACCTTTTCACACCCGCGGAA
AAAACGAACCGGGTCACACACTGGGAAATCAGTTTTCACACGAGTGTGAT
TTGTGTAGTAACGAATCGATTCAATTGTTCTTGCATGAAAGTTAGATCAT
TTCCTTAACTCTTGATTTCTGAAACAATTTAGTGTTAGAATCAATTCAAG
AGCATCTGGATGAAGTCCTTCTCAGTAACGAGTCAAGTAAGGGCAATCGT
TGTTTGCTTTTGGCTTTCTAATAAGTACCTCAAATATGATCAATTCTTTT
TAAACTTCCCAGCATTCTTCACTATCTTTTCCCAACCATGTTTGTAAATT
CAtaaatgaaatatttctttcccTGAACAAATAAAGTCTATTCTTTTGAT
TAAGCTGTTTTGAATTTTCACTACttctcatcatcatcatcatcatcctt
cgacctaggtccgaatggacctaggtcggaaacaaacaataaccaTCCCT
CCACAGCTCTCGATCAGCCATTGCAGCGCCCAGTTCCTCAATCTCTAGCC
CTGTTTCTCGTTTCAAAGTATCAAGAAAAGTGCGCTTTCTCGAGCGCCTA
GTGCCCGCAGGACACCAAAGTAAGACCTCAGACACCATTTCGTTTTTCGC
ACGGAAACAGTGACCTGAGAAAGAGAGCATCCTGCTAGTCAGGACAGAGG
AAATTCTTGGGAGTCCATGATATATCNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGTTTTCTCTTCTTTTATCTGGTGAGCCACC
TTTGAGCTGAATAGAAGGGTGGTCTTTTCGACCTGTTAGATCATTGATCG
TTTTCCAAGCGGCCGAGTGGTTCACTACTTCTGAACTTTTGCATAAACTG
TAAAAATGTTTTAACAGCATGAAATGATAAATCTTTTTCTAGGTCGAATG
TCTTCACGTACTACCACACGAAATAGTAAAGTTTCATCCGCTCGCTCCAG
CGTTCCATCAACTGCTTCAAGCTATCGCTGACGAGTTTAATCAATTATGT
TGTTTTAAACACAGAATATCCCTAGCACAGACAATTTAGCAACTTGACAT
TGGATTTTTCCGTGACCTTATACGCTTTGTAATTATcttcctttcaattt
tttttcgaaatgtcGTCATGGAACGTTAGTTTGGGACTAAAGCCTGATTT
GGTATATTATTCAACTAAATTCAACTAGCAGCAAAAATCCtgaacatttt
taattttggcgtgaataaattttaaagaatggtcaaactttttaattttg
ccgaatGACAGACTGAATCTGTTCTATTTTTGGGGAATTTTGTCTAAACT
CGCCATGTTCACCAGAATTAGCTCTCACCAAAATTATGTTCCCTTAATGT
ACGACAAGGAATTACCAGAGCTTGTTGATGAACTATAAAACCCCTCTAAT
TTGTCTTTACCGAAAAAGGACGAGATGTTTcgtgttttattttttgttta
ataattttatgtttttgtgaTTTCCTATAAGGTTTCTGGAAAATTTTTCG
ATGTTTTAAATACTCAAATTTTTCTCCATGAGGAAAGATATTTAcgaaat
agaaaaaagaaattcgaaaaatattattaaagtTTATGCCTTGACTCAAC
TCAAGCAATGGCAACGTTAACAATGGTAAATCCTCATATGACGTCACGAC
GTGGaaaaaatcgtcaattttttcAGGCACCATTTagctttattttaaga
aaatagaaaaagaaaatatttgtttttatttactgGAAATAGTATCCTTG
TAAAATTGtattaaaattattattataaatgttcatttcttttttataat
tattatatACACCATTTTTACTAATGCTGAATACATTTGAAAACGattta
aaataaagaaatataaattgacaaaagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001526XLOC_001526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002800-exon-sc0000023-1491911889:194371..194513TCONS_00002800-exon-sc0000023-1491911889:194371..194513Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1510915933:194371..194513TCONS_00002800-exon-sc0000023-1510915933:194371..194513Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1575043694:194371..194513TCONS_00002800-exon-sc0000023-1575043694:194371..194513Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1491911889:194881..195330TCONS_00002800-exon-sc0000023-1491911889:194881..195330Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1510915933:194881..195330TCONS_00002800-exon-sc0000023-1510915933:194881..195330Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1575043694:194881..195330TCONS_00002800-exon-sc0000023-1575043694:194881..195330Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1491911889:195919..196071TCONS_00002800-exon-sc0000023-1491911889:195919..196071Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1510915933:195919..196071TCONS_00002800-exon-sc0000023-1510915933:195919..196071Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1575043694:195919..196071TCONS_00002800-exon-sc0000023-1575043694:195919..196071Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1491911889:197053..197106TCONS_00002800-exon-sc0000023-1491911889:197053..197106Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1510915933:197053..197106TCONS_00002800-exon-sc0000023-1510915933:197053..197106Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1575043694:197053..197106TCONS_00002800-exon-sc0000023-1575043694:197053..197106Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1491911889:199113..200099TCONS_00002800-exon-sc0000023-1491911889:199113..200099Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1510915933:199113..200099TCONS_00002800-exon-sc0000023-1510915933:199113..200099Clytia hemisphaericaexon
TCONS_00002800-exon-sc0000023-1575043694:199113..200099TCONS_00002800-exon-sc0000023-1575043694:199113..200099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:194371..200099 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107317	0.179607	0	0.0628457	1.59649	1.0515	0.445666	0.783226	0.86956	0.116138	0.0575247	0.219287	0.0736402	0	0.110422	0.0622738	0.281515	0	0.112945	0.0640826	0.0565168	0.178141	0	0	0.101393	0.261841	0.153966	0.0858806	0.257246	0.125059
Blast
[Close]
BLAST of TCONS_00002800 vs. Swiss-Prot (Human)
Match: CEP41 (Centrosomal protein of 41 kDa OS=Homo sapiens GN=CEP41 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.971e-19
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 2 
Query:  479 KNKPGKIIIVYDDDEKLAPQVATSLLQKDVENVIMLSGGMKVLHKKFPSCFITGTVPSTC---FSPKTDRK-GKLKPPPKVISNIGVEW-YTPELLESIQEHLDE 778
            KN  GKIII+YDDDE+LA Q AT++ ++  EN+ MLSGG+KVL +KFP   ITG++P++C     P + RK    K PP    N   +W +TPE L+ I+ +L+E
Sbjct:  215 KNAHGKIIILYDDDERLASQAATTMCERGFENLFMLSGGLKVLAQKFPEGLITGSLPASCQQALPPGSARKRSSPKGPPLPAEN---KWRFTPEDLKKIEYYLEE 316
The following BLAST results are available for this feature:
BLAST of TCONS_00002800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CEP412.971e-1947.62Centrosomal protein of 41 kDa OS=Homo sapiens GN=C... [more]
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