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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002797 ID=TCONS_00002797|Name=TCONS_00002797|organism=Clytia hemisphaerica|type=transcript|length=2863bpRun BLAST on NCBI protein sequence of TCONS_00002797-protein >TCONS_00002797-protein ID=TCONS_00002797-protein|Name=TCONS_00002797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp RTNFILGLLLFVVTIATMLNPAECKKGKGPKGKDKGPKGRDRKSRKKFKLRun BLAST on NCBI transcript from alignment at sc0000023:109597..124627+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002797 ID=TCONS_00002797|Name=TCONS_00002797|organism=Clytia hemisphaerica|type=transcript|length=15031bp|location=Sequence derived from alignment at sc0000023:109597..124627+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:109597..124627+ >TCONS_00002797 ID=TCONS_00002797|Name=TCONS_00002797|organism=Clytia hemisphaerica|type=CDS|length=20460bp|location=Sequence derived from alignment at sc0000023:109597..124627+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002797 vs. Swiss-Prot (Human)
Match: MMP13 (Collagenase 3 OS=Homo sapiens GN=MMP13 PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.072e-35 Identity = 99/253 (39.13%), Postives = 129/253 (50.99%), Query Frame = 3
Query: 231 QDFFGLPLTGQLDYVTMRTMEQPRCGMTDPIERFKDXXXXXXXXXXXXXXXXXXXXXXIHRGKRFLQQGTSWLPLFEKTGENKLKWTLLTTGTQL------LSRDEVLIETRKAFQFWADVTNLIFEEVSLEDVDKKYAKDDI-EILVSFGNEDHGDPYPFDGQGGTLAHAFYPLSNDGLSGDVHFDDDEDYTIQSEQGTNLLWVATHEIGHSLGLEHSNVNGALMYPVYT-GYRPDFSLNIDDILGIQSLYG 965
Q FFGL +TG+LD T+ M++PRCG+ D E +F +T LKW+ + ++ ++ EV +KAF+ W+DVT L F + D I +I++SFG ++HGD YPFDG G LAHAF P N G GD HFDDDE +T S +G NL VA HE GHSLGL+HS GALM+P+YT + F L DD+ GIQSLYG
Sbjct: 72 QSFFGLEVTGKLDDNTLDVMKKPRCGVPDVGE----------------------------------------YNVFPRT----LKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRL----------HDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYG--GDAHFDDDETWT-SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 267 The following BLAST results are available for this feature:
BLAST of TCONS_00002797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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