TCONS_00002794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002794
Unique NameTCONS_00002794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002794 ID=TCONS_00002794|Name=TCONS_00002794|organism=Clytia hemisphaerica|type=transcript|length=308bp
GTCGATGACAAAGAAGTCACATATAAAGGCAACATAAAGGCAGACCCTTT
GCTGAAGTTGATCACCAACCACTCTGGAAGACAtgatgaaatattctttc
acACTTATCACCAAATCACTGAATTATGGTTCCGGCAGATCATCACAGAG
CTCGACTCTATACAAGTCATATTCATAGAACACAAGGTCCATCAGAATAT
CATGCTTATCATAGAAAGGTTggatagaatcatcaaaatgtTTGAAGTGC
TGTGTGATCAAATGAAAGTCATGGAAACACTCAATCCCCTTGAATTCGTC
AATTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00002794-protein

>TCONS_00002794-protein ID=TCONS_00002794-protein|Name=TCONS_00002794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
VDDKEVTYKGNIKADPLLKLITNHSGRHDEIFFHTYHQITELWFRQIITE
LDSIQVIFIEHKVHQNIMLIIERLDRIIKMFEVLCDQMKVMETLNPLEFV
NF
Run BLAST on NCBI

transcript from alignment at sc0000023:96317..100372+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002794 ID=TCONS_00002794|Name=TCONS_00002794|organism=Clytia hemisphaerica|type=transcript|length=4056bp|location=Sequence derived from alignment at sc0000023:96317..100372+ (Clytia hemisphaerica)
GTCGATGACAAAGAAGTCACATATAAAGGCAACATAAAGGTTAGTCTTGG
AAATTAAACCagctgggaaattcaaactcataGTCAAGACCATGCTATTC
ATTTAGCCatcatataaaaaaagaaatcatggCATGGATTTCCAAGCTAC
CAGTGTTATGAACAATATTTTCAGTTGTCGGTAATTTTGATTAAGACCTa
attcaaagaaagaaaaaatcataaattgaGCAAACCAAACACGACCTATT
TTGCTTTAACAAAAGCCAAGAAAACTGTATTTAAAGTTGACCTATCTCGG
CttaaaaagaattttaaattttagtttccTACTGTGTACTGAAGGAGTTA
TGGGTGGATATGTGTTTACGACTTTTCATTTGCGAACTTTTCTGTAGCAT
CTTcaaaaagaattgaactgatTGCTATCATTTTGATATTTCAGGCAGAC
CCTTTGCTGAAGTTGATCACCAACCACTCTGGAAGACAtgatgaaatatt
ctttcacACTTATCACCAAAGTATGTTTTGTTAAATttcgaattttattt
tcaatcgtACATACACACGTTCAATTGTAACGTCCTGGTTGATAGCAAAA
AAGTTCCATACGAGTCATCATTAGAATATTGGGAGTTCAAACTCATAGCT
CAAACCATGCTATTCATTGGATTTACGCCAGTGTTTGtttgtaaaaattc
aataatccCGTAGGAAATGTTGTTAAGGAAGATTAATTGCGACTACAGGG
GAAAGATTATTGGCACAGCCGCGCAGCGCAagtgggcctttaaaaagcaa
ctgaacAAAAAGATTTTGGTTTTGTCAGGGCTTGTGCGCGCAATAAGTTA
ACGAATCCAGGCTAAACAACGCCCAACCGCCCGACCGCCCGTTTTTTGTC
TCGTCTACCCGCGTGATATTCAGCCtgtttagtttagtttagtAACAGag
tcaaatttcttttatttttggttGCGAGATGAAGTgagaaccattgagtt
tcaagccgaaggctagaggtcaatctccttggtaggatttgaagccaaca
aatcctaccaaagttgcgcggccttgagcgacccgcctggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaatccgtcatcaaaaatacggcgcatattttaaggcttcaatttt
tcttgcctgagaaaggttagagattgacctctagccttcggcttgaaact
caatggtgaGAACATGGTTATTTTCAAGAtggattgaaatttttattaca
aacttGACACAGAATTTTCCCAAAGTagactgattctggaatttgttaat
ggatactacaatgcagctcatgtgtaaatttgaaaaagatcgGAAGATTT
TTCATGGTGCTATGCTtgaaaaatggtcatttctggatctgccAGTCTGC
ATACTGTCTCCTCGTCGCATTTTAACGCTCGGttattggatttttcaaac
ttgacacagaATTTTCCCAAGTAAACCGATTCTGTAATTTGTTAATGGAT
ACtacaatgcagctcatgtgtaaatttgaaaaagatcgGGATATTTTTCA
TGGTGCTATGCGTGAAAATCGTCATTTCTAGATCTGTTACATTTAACGTT
CGGTGACTGGNTGCTAATAAACACCTGTTGAAGAGCTTAATAATTTTACT
CAGGTTATCTCTGATGGGCCTCAAGGTTAATTCTTGAAGGCTGTTGCTGA
TGGTATTTTTCAAGTTCGACACAGAATTTTTCTAAGTAAACTGATTCAGG
AATTTATTAatggatactaaaatgcagcccATGTCTTAAATTGAATAagg
ttgaaaacatttttcatgattctagCGTGTGAAAATGATGATCCTTTATT
GATCATTTTCAAGGTCAGTGACATGGGAAGTTTGAATTTATTAaccaatt
ttttctttcatattaCCGTCAAAGTGCATAAGATTCCGGTTCCTGGACTA
TAATAATTCCACTTGCAACTTGAAAacggaaaaagataaaaactttTTGG
ATAGCCAAAGAAGGAAATTTAGAAAGTTGGATGGTCACACAGAAGCGTCT
CGCTTTTTTCTGGGCGATTTCTAGCAATATGATTGCCGGTATAGCCGGGG
AGAATAGCAGAACGATTACAGAAAAGCGCCAGTAATTTTTGcactctttt
ttttctttgcaaaatttttgcactttgacggtagtatcaaaaatataaaa
tgaatttattttgtaCATAATGTAACTCTCATTCGTTTACCATTTCTGAC
TTTTTAGCGCATctgctttcttttgttttgatattttgttcgGCAAAGCT
TGGAACATTTTTGGCTTTTCATTTTTGCGCTTCGAGAGTATAAATTTGGT
ACTATTCGCAAAACCCAAAACGCAGAAATTAGTCCCGCCAACATTGCCGG
TACTCGGTACGAATGAACATTCAGTttttgccacgtcagctgggccttca
cgccgaTGCGGCTTCTTACTAGATTTTAGTTGGCTTTATTTCTGGAGATG
TATTGAAGTTATATAGCTTGGTATAAAAAATGACAAGCTAGCCAGTAAAG
AATCTTCAACAAAATCAACGAATTTGTAATTTGTTATTCACAGTCACTGA
ATTATGGTTCCGGCAGATCATCACAGAGCTCGACTCTATACAAGTCATAT
TCATAGAACACAAGGTTTGTGCTGCTAAGATTTCTAGCTTTATCTGAAAA
GCAAAACATATGATATGTCTTCAACAATAAAATATCAAGTTTCTATCTCT
AGCAGTTAAgtgtggggggcgtacggtatttcggaatcgcagaaatcgac
ccttttttctttggaattttggagatcgggcaaaattccttcggtatttt
ggaattctgaaattgtttcggtgtcagaaatccatgaatttttgcttcga
aatttcggtaatgTAAAGTTTTTATTCCCTTGAACGTATtctttacggaa
tttcggaaatttttgcaaaattattcggtatttctgAAATCGCAAACCCC
ATACGCCTCCACTTAAGCGAGCTTTGATTTTAAACGGTCGACCTTTGCTC
cccttttttgtcaaaaaaacgaCAGACAGAAAAGTCTAAACTGTCTAGAG
TCAATCTGATGCATTCTTTTGTCGCCTGGTACGATTGAATGtttcaaagt
ttcagccttGCTTTTGTAataagtcaaaattttcaaaaaaggaaaaaaca
gtCAAACCTTTCtaatttgaaattctgtaattcgaatcgtcttgtaattc
gaactaaaacattgatTCCCTCAATTGTGAAAATTAGTATAAAATTTTCT
CCTAATTctaatttttctctaattcgaagaataTTCTCTGTCCCTTGAAA
CTCGatttagagagagtcaactataCACGTCACTACGTAGAAAACCTGGG
AGAGTACTaaggcaaaatgggttacggggatgtgccgctggtcagggtac
cttttttcatgAGTCCCCGGTAGGGTcgcaaaacaccaaaatagaaaaat
tagtccctcgtagggtgtctttttggaagatttgtgtaaaaagtagaaaa
ttatgAGACAATTTTGTGAcccttttttcctcaaattttggcaaatttca
aaaccagtcccacgtagggtccatttttcgaacctcagcggagcacccat
GTCGGGGTAAAAAAATATCATGTACTCAAAACACGAATTCCATGAAAAAG
GCTAAATTGTGACTTGTATCTTTGCACACTACAGGTCCATCAGAATATCA
TGCTTATCATAGAAAGGTTggatagaatcatcaaaatgtTTGAAGTGCTG
TGTGATCAAATGAAAGTCATGGAAACACTCAATCCCCTTGAATTCGTCAA
TTTCAG

Coding sequence (CDS) from alignment at sc0000023:96317..100372+

>TCONS_00002794 ID=TCONS_00002794|Name=TCONS_00002794|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000023:96317..100372+ (Clytia hemisphaerica)
GTCGATGACAAAGAAGTCACATATAAAGGCAACATAAAGGCAGACCCTTT
GCTGAAGTTGATCACCAACCACTCTGGAAGACAtgatgaaatattctttc
acACTTATCACCAAATCACTGAATTATGGTTCCGGCAGATCATCACAGAG
CTCGACTCTATACAAGTCATATTCATAGAACACAAGGTCCATCAGAATAT
CATGCTTATCATAGAAAGGTTggatagaatcatcaaaatgtTTGAAGTGC
TGTGTGATCAAATGAAAGTCATGGAAACACTCAATCCCCTTGAATTCGTC
AATTTCGTCGATGACAAAGAAGTCACATATAAAGGCAACATAAAGGCAGA
CCCTTTGCTGAAGTTGATCACCAACCACTCTGGAAGACAtgatgaaatat
tctttcacACTTATCACCAAATCACTGAATTATGGTTCCGGCAGATCATC
ACAGAGCTCGACTCTATACAAGTCATATTCATAGAACACAAGGTCCATCA
GAATATCATGCTTATCATAGAAAGGTTggatagaatcatcaaaatgtTTG
AAGTGCTGTGTGATCAAATGAAAGTCATGGAAACACTCAATCCCCTTGAA
TTCGTCAATTTCGTCGATGACAAAGAAGTCACATATAAAGGCAACATAAA
GGCAGACCCTTTGCTGAAGTTGATCACCAACCACTCTGGAAGACAtgatg
aaatattctttcacACTTATCACCAAATCACTGAATTATGGTTCCGGCAG
ATCATCACAGAGCTCGACTCTATACAAGTCATATTCATAGAACACAAGGT
CCATCAGAATATCATGCTTATCATAGAAAGGTTggatagaatcatcaaaa
tgtTTGAAGTGCTGTGTGATCAAATGAAAGTCATGGAAACACTCAATCCC
CTTGAATTCGTCAATTTCGTCGATGACAAAGAAGTCACATATAAAGGCAA
CATAAAGGCAGACCCTTTGCTGAAGTTGATCACCAACCACTCTGGAAGAC
AtgatgaaatattctttcacACTTATCACCAAATCACTGAATTATGGTTC
CGGCAGATCATCACAGAGCTCGACTCTATACAAGTCATATTCATAGAACA
CAAGGTCCATCAGAATATCATGCTTATCATAGAAAGGTTggatagaatca
tcaaaatgtTTGAAGTGCTGTGTGATCAAATGAAAGTCATGGAAACACTC
AATCCCCTTGAATTCGTCAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001522XLOC_001522Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002794-exon-sc0000023-1491911889:96317..96355TCONS_00002794-exon-sc0000023-1491911889:96317..96355Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1510915933:96317..96355TCONS_00002794-exon-sc0000023-1510915933:96317..96355Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1575043694:96317..96355TCONS_00002794-exon-sc0000023-1575043694:96317..96355Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1491911889:96761..96836TCONS_00002794-exon-sc0000023-1491911889:96761..96836Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1510915933:96761..96836TCONS_00002794-exon-sc0000023-1510915933:96761..96836Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1575043694:96761..96836TCONS_00002794-exon-sc0000023-1575043694:96761..96836Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1491911889:99110..99180TCONS_00002794-exon-sc0000023-1491911889:99110..99180Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1510915933:99110..99180TCONS_00002794-exon-sc0000023-1510915933:99110..99180Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1575043694:99110..99180TCONS_00002794-exon-sc0000023-1575043694:99110..99180Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1491911889:100251..100372TCONS_00002794-exon-sc0000023-1491911889:100251..100372Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1510915933:100251..100372TCONS_00002794-exon-sc0000023-1510915933:100251..100372Clytia hemisphaericaexon
TCONS_00002794-exon-sc0000023-1575043694:100251..100372TCONS_00002794-exon-sc0000023-1575043694:100251..100372Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002794-proteinTCONS_00002794-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:96317..100372 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	1.90828	7.62251	5.93704	8.33846	10.258	0	0.275585	5.3303	7.17143	0	0	0	0	0.769089	0.686393	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004981Trp_2_3_dOase
Vocabulary: Biological Process
TermDefinition
GO:0019441tryptophan catabolic process to kynurenine
Vocabulary: Molecular Function
TermDefinition
GO:0004833tryptophan 2,3-dioxygenase activity
GO:0020037heme binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019441 tryptophan catabolic process to kynurenine
molecular_function GO:0020037 heme binding
molecular_function GO:0004833 tryptophan 2,3-dioxygenase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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