TCONS_00002782 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002782
Unique NameTCONS_00002782
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002782 ID=TCONS_00002782|Name=TCONS_00002782|organism=Clytia hemisphaerica|type=transcript|length=407bp
ACTTGACTTATCAGCACACCTCTGGTTGAGGCTTCGCCCACTTGTGAACT
TTCTCTCGCCATCTGGTTCTATCACGTGCGTATCGTTCGGCCGTTGCTAA
TGGAAGACCTGTGTCTTCCCTGATTTTATCTTGCCATCTTTTTGCAGGTC
TACCTCTCCTTCGTGTGCCTTGGAACTCATCtttcaaacatattttagcT
AGACTCTCCTCGGGCAGTCTTGCTACATGCCCAAACCAAGACAAGCGTCT
CTTTTTGATCATATAGACAATCGGCATTTTGAGCTTTGCTCTCTTACGTA
GCCTTTTGAGTGATATCCGGTCCTGGAGTCTAATCCCCAGTATGGAGCGA
ATACAATTGTTTTCGAATACTGAGAGCTTGTTTTCATCAAGCTTTGTTAG
AGACCAG
Run BLAST on NCBI

protein sequence of TCONS_00002782-protein

>TCONS_00002782-protein ID=TCONS_00002782-protein|Name=TCONS_00002782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
WSLTKLDENKLSVFENNCIRSILGIRLQDRISLKRLRKRAKLKMPIVYMI
KKRRLSWFGHVARLPEESLAKICLKDEFQGTRRRGRPAKRWQDKIREDTG
LPLATAERYARDRTRWREKVHKWAKPQPEVC
Run BLAST on NCBI

transcript from alignment at sc0000021:858777..859183

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002782 ID=TCONS_00002782|Name=TCONS_00002782|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0000021:858777..859183 (Clytia hemisphaerica)
CTGGTCTCTAACAAAGCTTGATGAAAACAAGCTCTCAGTATTCGAAAACA
ATTGTATTCGCTCCATACTGGGGATTAGACTCCAGGACCGGATATCACTC
AAAAGGCTACGTAAGAGAGCAAAGCTCAAAATGCCGATTGTCTATATGAT
CAAAAAGAGACGCTTGTCTTGGTTTGGGCATGTAGCAAGACTGCCCGAGG
AGAGTCTAgctaaaatatgtttgaaaGATGAGTTCCAAGGCACACGAAGG
AGAGGTAGACCTGCAAAAAGATGGCAAGATAAAATCAGGGAAGACACAGG
TCTTCCATTAGCAACGGCCGAACGATACGCACGTGATAGAACCAGATGGC
GAGAGAAAGTTCACAAGTGGGCGAAGCCTCAACCAGAGGTGTGCTGATAA
GTCAAGT

Coding sequence (CDS) from alignment at sc0000021:858777..859183

>TCONS_00002782 ID=TCONS_00002782|Name=TCONS_00002782|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000021:858777..859183 (Clytia hemisphaerica)
TGGTCTCTAACAAAGCTTGATGAAAACAAGCTCTCAGTATTCGAAAACAA
TTGTATTCGCTCCATACTGGGGATTAGACTCCAGGACCGGATATCACTCA
AAAGGCTACGTAAGAGAGCAAAGCTCAAAATGCCGATTGTCTATATGATC
AAAAAGAGACGCTTGTCTTGGTTTGGGCATGTAGCAAGACTGCCCGAGGA
GAGTCTAgctaaaatatgtttgaaaGATGAGTTCCAAGGCACACGAAGGA
GAGGTAGACCTGCAAAAAGATGGCAAGATAAAATCAGGGAAGACACAGGT
CTTCCATTAGCAACGGCCGAACGATACGCACGTGATAGAACCAGATGGCG
AGAGAAAGTTCACAAGTGGGCGAAGCCTCAACCAGAGGTGTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001510XLOC_001510Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002782-proteinTCONS_00002782-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002782-exon-sc0000021-1491911889:858777..859183TCONS_00002782-exon-sc0000021-1491911889:858777..859183Clytia hemisphaericaexon
TCONS_00002782-exon-sc0000021-1510915933:858777..859183TCONS_00002782-exon-sc0000021-1510915933:858777..859183Clytia hemisphaericaexon
TCONS_00002782-exon-sc0000021-1575043694:858777..859183TCONS_00002782-exon-sc0000021-1575043694:858777..859183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:858777..859183 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.51852	3.62919	2.49094	1.78635	3.08148	2.64393	1.61255	3.39881	1.9629	2.59998	3.78725	3.26623	3.12674	2.23251	1.62911	0.818698	1.39896	1.17399	2.03983	1.95363	0.692968	1.15701	0.205445	1.41931	4.98677	6.9767	1.93759	0.647046	1.65117	0.940498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top