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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002777 ID=TCONS_00002777|Name=TCONS_00002777|organism=Clytia hemisphaerica|type=transcript|length=916bp
TTCGAAATTAGCATTTTACCgtaagtgaaaattttaaagaatggAACATA
ACAATTATATGATGAACTGTGTGGAATTGTATCGCTACAAacaaaaacta
ccaaaattgtTTTCTAGGGCATTGAAAGAGTGTCATTAACTTTAGTAGTG
TCAACCTTTCTCCATAATGTTTTAGTTTTCTTTGATCTCATTCCAGTTTC
AACCAGAACATCATCCAATCGCTCCTCAAGATCATCCATATTTTTCTCCA
GGAACTCATTCTGTTTACAAAGCTTTTGAATATCCACTTCTGTCTCCTTA
ACACAATCTTGCAATCGTTTATACATTGATATAGggacaaaaaacttttt
ccgatACTCAACAAGTGCTTGTAAACCTGTCACTTTTCGTTCAATTTTCG
TTTGCAATGTCTCTACTTTAATCTCGTTTTTCCGAATCTCATCATTTTGC
TCCATCTCAGCTCTAGCAATATCCTCTGGACTCATTGAATGTTCGATCTG
AATTGATTTCTGCTCTTCAAGCAGGATTCTTAACCTTTCATTTCTGCTGA
AAGCATCTTGTATTTCAATTTCCAGATTCTCGATTTCACGTTCCTTAACT
TTGACCATGTCTTCTTCAGAGGTCAGTGATTTTGAGCTACAAGCTCCAGG
CAGCGATGTATTTGAACGTTGCAAGAAGTTGTAGCCTTCAGTTTTAGCTG
ATCTTCCGCTGTCAAGCTGTAAATCCAGTAGAGCATTCACGTAATTGTCG
TAAGCTTGTTTAATTGTTTGTAATGCTTTTCCATGGGTCTTTGAAGATTC
GATGATTTCCTCCCACTTGTCACTGCTTCGTTGGAGATTGAAAAAGCTTA
ATTCAGACATGGGTCCTTTTATCTCTAATATTTGTCGAAAATGATTTGAG
AAAAGAAGACAAGAAC Run BLAST on NCBI protein sequence of TCONS_00002777-protein >TCONS_00002777-protein ID=TCONS_00002777-protein|Name=TCONS_00002777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
SCLLFSNHFRQILEIKGPMSELSFFNLQRSSDKWEEIIESSKTHGKALQT
IKQAYDNYVNALLDLQLDSGRSAKTEGYNFLQRSNTSLPGACSSKSLTSE
EDMVKVKEREIENLEIEIQDAFSRNERLRILLEEQKSIQIEHSMSPEDIA
RAEMEQNDEIRKNEIKVETLQTKIERKVTGLQALVEYRKKFFVPISMYKR
LQDCVKETEVDIQKLCKQNEFLEKNMDDLEERLDDVLVETGMRSKKTKTL
WRKVDTTKVNDTLSMP Run BLAST on NCBI transcript from alignment at sc0000021:634970..635885 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002777 ID=TCONS_00002777|Name=TCONS_00002777|organism=Clytia hemisphaerica|type=transcript|length=916bp|location=Sequence derived from alignment at sc0000021:634970..635885 (Clytia hemisphaerica)
GTTCTTGTCTTCTTTTCTCAAATCATTTTCGACAAATATTAGAGATAAAA
GGACCCATGTCTGAATTAAGCTTTTTCAATCTCCAACGAAGCAGTGACAA
GTGGGAGGAAATCATCGAATCTTCAAAGACCCATGGAAAAGCATTACAAA
CAATTAAACAAGCTTACGACAATTACGTGAATGCTCTACTGGATTTACAG
CTTGACAGCGGAAGATCAGCTAAAACTGAAGGCTACAACTTCTTGCAACG
TTCAAATACATCGCTGCCTGGAGCTTGTAGCTCAAAATCACTGACCTCTG
AAGAAGACATGGTCAAAGTTAAGGAACGTGAAATCGAGAATCTGGAAATT
GAAATACAAGATGCTTTCAGCAGAAATGAAAGGTTAAGAATCCTGCTTGA
AGAGCAGAAATCAATTCAGATCGAACATTCAATGAGTCCAGAGGATATTG
CTAGAGCTGAGATGGAGCAAAATGATGAGATTCGGAAAAACGAGATTAAA
GTAGAGACATTGCAAACGAAAATTGAACGAAAAGTGACAGGTTTACAAGC
ACTTGTTGAGTatcggaaaaagttttttgtccCTATATCAATGTATAAAC
GATTGCAAGATTGTGTTAAGGAGACAGAAGTGGATATTCAAAAGCTTTGT
AAACAGAATGAGTTCCTGGAGAAAAATATGGATGATCTTGAGGAGCGATT
GGATGATGTTCTGGTTGAAACTGGAATGAGATCAAAGAAAACTAAAACAT
TATGGAGAAAGGTTGACACTACTAAAGTTAATGACACTCTTTCAATGCCC
TAGAAAacaattttggtagtttttgtTTGTAGCGATACAATTCCACACAG
TTCATCATATAATTGTTATGTTccattctttaaaattttcacttacGGTA
AAATGCTAATTTCGAA Coding sequence (CDS) from alignment at sc0000021:634970..635885 >TCONS_00002777 ID=TCONS_00002777|Name=TCONS_00002777|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0000021:634970..635885 (Clytia hemisphaerica)
TCTTGTCTTCTTTTCTCAAATCATTTTCGACAAATATTAGAGATAAAAGG
ACCCATGTCTGAATTAAGCTTTTTCAATCTCCAACGAAGCAGTGACAAGT
GGGAGGAAATCATCGAATCTTCAAAGACCCATGGAAAAGCATTACAAACA
ATTAAACAAGCTTACGACAATTACGTGAATGCTCTACTGGATTTACAGCT
TGACAGCGGAAGATCAGCTAAAACTGAAGGCTACAACTTCTTGCAACGTT
CAAATACATCGCTGCCTGGAGCTTGTAGCTCAAAATCACTGACCTCTGAA
GAAGACATGGTCAAAGTTAAGGAACGTGAAATCGAGAATCTGGAAATTGA
AATACAAGATGCTTTCAGCAGAAATGAAAGGTTAAGAATCCTGCTTGAAG
AGCAGAAATCAATTCAGATCGAACATTCAATGAGTCCAGAGGATATTGCT
AGAGCTGAGATGGAGCAAAATGATGAGATTCGGAAAAACGAGATTAAAGT
AGAGACATTGCAAACGAAAATTGAACGAAAAGTGACAGGTTTACAAGCAC
TTGTTGAGTatcggaaaaagttttttgtccCTATATCAATGTATAAACGA
TTGCAAGATTGTGTTAAGGAGACAGAAGTGGATATTCAAAAGCTTTGTAA
ACAGAATGAGTTCCTGGAGAAAAATATGGATGATCTTGAGGAGCGATTGG
ATGATGTTCTGGTTGAAACTGGAATGAGATCAAAGAAAACTAAAACATTA
TGGAGAAAGGTTGACACTACTAAAGTTAATGACACTCTTTCAATGCCCTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002777-exon-sc0000021-1491911889:634970..635885 | TCONS_00002777-exon-sc0000021-1491911889:634970..635885 | Clytia hemisphaerica | exon |
| TCONS_00002777-exon-sc0000021-1510915933:634970..635885 | TCONS_00002777-exon-sc0000021-1510915933:634970..635885 | Clytia hemisphaerica | exon |
| TCONS_00002777-exon-sc0000021-1575043694:634970..635885 | TCONS_00002777-exon-sc0000021-1575043694:634970..635885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:634970..635885 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032755 | TSNAXIP1_N |
Blast
The following BLAST results are available for this feature:
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