TCONS_00002776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002776
Unique NameTCONS_00002776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002776 ID=TCONS_00002776|Name=TCONS_00002776|organism=Clytia hemisphaerica|type=transcript|length=416bp
CGCTCCTCAAGATCATCCATATTTTTCTCCAGGAACTCATTCTGTTTACA
AAGCTTTTGAATATCCACTTCTGTCTCCTTAACACAATCTTGCAATCGTT
TATACATTGATATAGggacaaaaaactttttccgatACTCAACAAGTGCT
TGTAAACCTGTCACTTTTCGTTCAATTTTCGTTTGCAATGTCTCAACCTT
AATCTCATTTTTCCGAATCTCATCATTTTGCTCCATCTCAGCTCTGGCAA
TATCCTCTGGACTCATTGAATGTTCGATCTGAATTGATTTCTGCTCTTCA
AGCAGGATTCTTAACCTTTCATTTCTGCTGAAAGCATCTTGTATTTCAAT
TTCCAGATTCTCGATTTCACGTTCCTTAACTTTGACCATGTCTTCTTCAG
AGGTCAGTGATTTTGA
Run BLAST on NCBI

protein sequence of TCONS_00002776-protein

>TCONS_00002776-protein ID=TCONS_00002776-protein|Name=TCONS_00002776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
SKSLTSEEDMVKVKEREIENLEIEIQDAFSRNERLRILLEEQKSIQIEHS
MSPEDIARAEMEQNDEIRKNEIKVETLQTKIERKVTGLQALVEYRKKFFV
PISMYKRLQDCVKETEVDIQKLCKQNEFLEKNMDDLEE
Run BLAST on NCBI

transcript from alignment at sc0000021:634359..634774

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002776 ID=TCONS_00002776|Name=TCONS_00002776|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at sc0000021:634359..634774 (Clytia hemisphaerica)
TCAAAATCACTGACCTCTGAAGAAGACATGGTCAAAGTTAAGGAACGTGA
AATCGAGAATCTGGAAATTGAAATACAAGATGCTTTCAGCAGAAATGAAA
GGTTAAGAATCCTGCTTGAAGAGCAGAAATCAATTCAGATCGAACATTCA
ATGAGTCCAGAGGATATTGCCAGAGCTGAGATGGAGCAAAATGATGAGAT
TCGGAAAAATGAGATTAAGGTTGAGACATTGCAAACGAAAATTGAACGAA
AAGTGACAGGTTTACAAGCACTTGTTGAGTatcggaaaaagttttttgtc
cCTATATCAATGTATAAACGATTGCAAGATTGTGTTAAGGAGACAGAAGT
GGATATTCAAAAGCTTTGTAAACAGAATGAGTTCCTGGAGAAAAATATGG
ATGATCTTGAGGAGCG

Coding sequence (CDS) from alignment at sc0000021:634359..634774

>TCONS_00002776 ID=TCONS_00002776|Name=TCONS_00002776|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000021:634359..634774 (Clytia hemisphaerica)
TCAAAATCACTGACCTCTGAAGAAGACATGGTCAAAGTTAAGGAACGTGA
AATCGAGAATCTGGAAATTGAAATACAAGATGCTTTCAGCAGAAATGAAA
GGTTAAGAATCCTGCTTGAAGAGCAGAAATCAATTCAGATCGAACATTCA
ATGAGTCCAGAGGATATTGCCAGAGCTGAGATGGAGCAAAATGATGAGAT
TCGGAAAAATGAGATTAAGGTTGAGACATTGCAAACGAAAATTGAACGAA
AAGTGACAGGTTTACAAGCACTTGTTGAGTatcggaaaaagttttttgtc
cCTATATCAATGTATAAACGATTGCAAGATTGTGTTAAGGAGACAGAAGT
GGATATTCAAAAGCTTTGTAAACAGAATGAGTTCCTGGAGAAAAATATGG
ATGATCTTGAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001504XLOC_001504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002776-exon-sc0000021-1491911889:634359..634774TCONS_00002776-exon-sc0000021-1491911889:634359..634774Clytia hemisphaericaexon
TCONS_00002776-exon-sc0000021-1510915933:634359..634774TCONS_00002776-exon-sc0000021-1510915933:634359..634774Clytia hemisphaericaexon
TCONS_00002776-exon-sc0000021-1575043694:634359..634774TCONS_00002776-exon-sc0000021-1575043694:634359..634774Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002776-proteinTCONS_00002776-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:634359..634774 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.167132	0	0	0	0	0.220349	0	0.144427	0	0.694564	0	0	0	0	0	0	0.0226824	0	0	0.458993	0	0	0	0	1.11314	0	0	0	0.033336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top