TCONS_00002771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002771
Unique NameTCONS_00002771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002771 ID=TCONS_00002771|Name=TCONS_00002771|organism=Clytia hemisphaerica|type=transcript|length=429bp
TACTAATTTTTGTTgttattcaatgattttaaactttttctttgctCTGA
TAGTTTCTAATTGGGAGAAATTCGTAATTCGCATAAATAAACTAAACATG
AATATAAATAActaaaaagtagcaaaaaatattacaataCATTTATAAAT
TTacagtttttttttctacaggCAAGAGTTACAAAGTTACAAAACCTTTC
GGAGGTTCAGGTACAAGCAAGTTTTCCAGAGTCGTTATATATATACAAAA
GAAAGTAACGTAAAAGAAAATACGAAGTAAATATTGAGAATAATTTAGGG
ATATTTACAatctacaatcagggacaaaatacttggcacaaagggaaatt
caccggggtgttttgaaaccacaatcgatttgtaagtgctctaaagtagg
ttcgaagggtagagttttaactctgagtt
Run BLAST on NCBI

transcript from alignment at sc0000021:582752..583180

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002771 ID=TCONS_00002771|Name=TCONS_00002771|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at sc0000021:582752..583180 (Clytia hemisphaerica)
aactcagagttaaaactctacccttcgaacctactttagagcacttacaa
atcgattgtggtttcaaaacaccccggtgaatttccctttgtgccaagta
ttttgtccctgattgtagatTGTAAATATCCCTAAATTATTCTCAATATT
TACTTCGTATTTTCTTTTACGTTACTTTCTTTTGTATATATATAACGACT
CTGGAAAACTTGCTTGTACCTGAACCTCCGAAAGGTTTTGTAACTTTGTA
ACTCTTGcctgtagaaaaaaaaactgtAAATTTATAAATGtattgtaata
ttttttgctactttttagTTATTTATATTCATGTTTAGTTTATTTATGCG
AATTACGAATTTCTCCCAATTAGAAACTATCAGagcaaagaaaaagttta
aaatcattgaataacAACAAAAATTAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001499XLOC_001499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002771-exon-sc0000021-1491911889:582752..583180TCONS_00002771-exon-sc0000021-1491911889:582752..583180Clytia hemisphaericaexon
TCONS_00002771-exon-sc0000021-1510915933:582752..583180TCONS_00002771-exon-sc0000021-1510915933:582752..583180Clytia hemisphaericaexon
TCONS_00002771-exon-sc0000021-1575043694:582752..583180TCONS_00002771-exon-sc0000021-1575043694:582752..583180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:582752..583180 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.2131	39.6203	12.0493	9.86988	0	0.175418	0.849163	0.999079	2.90975	0.684006	2.34359	0.557007	0.884806	0.923998	0	0	8.75098	8.4544	3.83485	1.31484	12.041	13.8826	19.1923	9.95024	3.23287	8.62347	20.2939	19.8498	7.5587	7.77169
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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