TCONS_00002748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002748
Unique NameTCONS_00002748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002748 ID=TCONS_00002748|Name=TCONS_00002748|organism=Clytia hemisphaerica|type=transcript|length=718bp
GCTTTAAACGGATCTTACACAATCTCCAAACATGCCATCGAAGCTTTCTC
ATACTGCTTAATGGAAGAGGTCGTCCATGATGGAATCTCTGTGCACATAA
TTTGTCCAACTGGTCAAAAAACTAACATCGTCGTTCCTGAGATACAACGC
AAACAATGGGAGGATGATTTCAATAAACAAAATGATGATATCAAACAAAG
ATATGgcccaaatttgaccaaatttttgaacGACGCATTTGCTCGGCAAG
CTAAAGTACCCGAAGGAACTGCTCAAGTCGTATCGAAAGTCAATCACGCT
ATCATGTCATCTAACCCTCACATCAAATACGTCGTTGGACCTTTATCGTG
GACCTACCAAATTCTAGCATGTTTACCTGTCTCTTATTTTCAATCGGCTG
CACATTCTATTTTCCCTCAGCTTAAACCCGTGATCGATCGGTTTGGACAA
AGATAAATTCTACTACTAAATTCTATATTGAAGTATTCACAATACACGGC
TGAGAAGCTTTCAACCTCACTGAACTTCAATCTCAAATGCCATAttattt
aaatctttttttgtggATTTAGGGTACAGATTTATAAAACCCGAAAAGAT
AGAtatcgtgctttaagccattgcaggcaaaaaaatattggaaaaatatt
gttgctattttgtttttgcttttcgaaaacccgtgaagcttctgattggt
caagtgctgaaattctat
Run BLAST on NCBI

transcript from alignment at sc0000021:1068655..1069694-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002748 ID=TCONS_00002748|Name=TCONS_00002748|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at sc0000021:1068655..1069694- (Clytia hemisphaerica)
GCTTTAAACGGATCTTACACAATCTCCAAACATGCCATCGAAGCTTTCTC ATACTGCTTAATGGAAGAGGTCGTCCATGATGGAATCTCTGTGCACATAA TTTGTCCAACTGGTCAAAAAACTAACATCGTCGTTCCTGAGATACAACGC AAACAATGGGAGGATGATTTCAATAAACAAAATGATGATATCAAACAAAG ATATGGCCCAAATTTGACCAAATGTAAGTTTTGTTTTTATTTTATCTCTG AAAAGCAGGTATGAAAATTGTAAAGTAACATTGTGAAATATTTTGATCGA TGTATATTTGCATGCCAAGAAGTGTAAGGCTTCAGTGTCATAAACCAGTG ATTCGCGGCTCAAATCCCCACGGTTTTCATGTTCAGTTCTTAAATAGCCA AGCAAGCTGGCTGTGGAATACGTCAAAACAATTGTCTGAAACAACTGTCT AAAAGTCCTAGATCACTCTGGGCCATCCAAGTGAAATATCGACCCTATCT TACCAATATCTTTAAATGAATGGAATCTTTATTTATTTTTTATAGTTTTG AACGACGCATTTGCTCGGCAAGCTAAAGTACCCGAAGGAACTGCTCAAGT CGTATCGAAAGTCAATCACGCTATCATGTCATCTAACCCTCACATCAAAT ACGTCGTTGGACCTTTATCGTGGACCTACCAAATTCTAGCATGTTTACCT GTCTCTTATTTTCAATCGGCTGCACATTCTATTTTCCCTCAGCTTAAACC CGTGATCGATCGGTTTGGACAAAGATAAATTCTACTACTAAATTCTATAT TGAAGTATTCACAATACACGGCTGAGAAGCTTTCAACCTCACTGAACTTC AATCTCAAATGCCATATTATTTAAATCTTTTTTTGTGGATTTAGGGTACA GATTTATAAAACCCGAAAAGATAGATATCGTGCTTTAAGCCATTGCAGGC AAAAAAATATTGGAAAAATATTGTTGCTATTTTGTTTTTGCTTTTCGAAA ACCCGTGAAGCTTCTGATTGGTCAAGTGCTGAAATTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001476XLOC_001476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002748-exon-sc0000021-1575043694:1069472..1069694TCONS_00002748-exon-sc0000021-1575043694:1069472..1069694Clytia hemisphaericaexon
TCONS_00002748-exon-sc0000021-1575043694:1068655..1069149TCONS_00002748-exon-sc0000021-1575043694:1068655..1069149Clytia hemisphaericaexon
TCONS_00002748-exon-sc0000021-1510915933:1069472..1069694TCONS_00002748-exon-sc0000021-1510915933:1069472..1069694Clytia hemisphaericaexon
TCONS_00002748-exon-sc0000021-1510915933:1068655..1069149TCONS_00002748-exon-sc0000021-1510915933:1068655..1069149Clytia hemisphaericaexon
TCONS_00002748-exon-sc0000021-1491911889:1069472..1069694TCONS_00002748-exon-sc0000021-1491911889:1069472..1069694Clytia hemisphaericaexon
TCONS_00002748-exon-sc0000021-1491911889:1068655..1069149TCONS_00002748-exon-sc0000021-1491911889:1068655..1069149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:1068655..1069694 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6542 10.6453 4.65984 3.15397 0.84596 1.03987 19.7715 22.8273 26.1582 30.3107 20.8626 22.9904 31.513 29.8168 57.0365 80.8572 7.14745 11.9171 14.5999 14.1316 3.64562 3.31425 12.5365 14.3527 6.81357 7.88522 156.05 88.2395 3.901 5.39209
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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