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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002731 ID=TCONS_00002731|Name=TCONS_00002731|organism=Clytia hemisphaerica|type=transcript|length=2023bp
GTTTAAGTGTAGATCTTACAGTCAATGATGGCGCAGACAGGAGTTGCTTT
CAGCTACAAGCAATGGCtcaaaaaacgtcaaataaCTACCAAATTATTCT
ACTTTATTGGGCTTATCCTTGGAATTGAGTATTCATTTACATTTGCAACT
TTGCTCGtttatttaaaagatttccttCAAGTCAAAAACAATTCGTTGAA
TATCTTTTATAGTTGCATTTCTGGAATATACATCCTGTCTATGATTATAT
CATCAgttttcattggaaagatatttgacAGAACTCGGCGAANTGTTTAC
TTAAAAGATTTCCTTCAAGTCAAAAacaatttgaatatcttttataGTTG
CATTTCTGGAATATACATCCTGTCTATGATTATATCATCAGttttcgttg
gaaagatatttgacAGAACTCGGCGAACGCGTCTAATATTCAGTTTGATC
TTAACGCTGGTGACAATTGGCAATGTCCTGTATACGATACCGATTTCGCC
TTANCATCTTAGCGCTGGTGACAATTGGCAATGTCCTGTATACGATACCG
ATTTCCCCTTATTTGTTATTATTTGGAAGATTACTGTCCGGTTTAGGGGA
TTGTCTTCGAGCAATCATTGTGGCTGAAGTAGCCCGCTCTTTCGCACCGG
ACGAAGTCGTCTCACAAATATCCGCTGTGTCTTGTACATATGTTGTGGGA
TTTACTCTTGGACCATGTATAAATTCTGCTTTTGTTAGAGcagatttttg
gtttttgggtgtGCATGTAGAATACTCAAACGGAGCTAGCTTAGTGACCT
GCTTTCTTTACATGATTGCcttctttttatcattgttttttgtCAGTGAT
TTATCGAGAGAATTTGACTTAAAAGaagctttaaaaagtttttcagcAGA
AGAATTGGAAGAAGCTTCGTTGGATTCAGAGCAAAAACTCATCACCAATG
AATGTTTTGAATCAGATCAAGAAGAGCAGTCAACTCCTATGATCGAGAAT
AAGTCATCATTTAACACCGATAACGAAATGGAAACCATGTTTGTCTTACG
AAAATTTTTCACCAACCTTGATACAATTTTGATTCTGGTGATGTCTTTTA
CAACCATGCTCTGTGTAGTTGTTTATGACTTATGGGTACCTCTAGCATGC
ATCGAAATCTTAAATTGGACAAACTTGGATATAAATCTTATTTATCTGAC
AAATGGAACCATAAGCTTGTTATTTCTCCTCATATGCATTTTCAAACCAC
CCAAAACTGATAAGATGATTTACTTAGGTTATGCTGCTTTTCCATCAATC
ATGATTATATTTGGagcattctttttctttaagtttGACACTTGGCATAT
AATATGGTTGGATGCCTTTTTATGGCTTGTTACATGTCTCTGTTTAAGCA
TTATTATTACAGCAGAGGAACTGTTTCTGATCNCTCAGAAGGAATACGTC
AATCATCTGCGCGACTTGGAAGCGCCCTAGGTCTGTTTACCGCCGCCTTC
ACCTTTCAGCACCTGAATTATTTTTGTCCATTAGTATTTTTTATatgtat
tttattaattttgctttTGATCATTAGAAGAAGGCAGTTTTATGAGCCTG
TACCAATATTTTAATTGAAACACTTTAAGTAGGGNATTCTTACATTTGCT
GTTTTTCTTGAAGGAGATATTCTAATTCTTGGCCATGGAAAGTCGCATGA
CCTTCGCAACCGCGCACTCACGAAAAGTCTAACATTttgaaatggggaaa
ataaaacAACTACAAGCTAGATTTTGCAGGCAGAACCGGCAACCGTGTGG
CACGAAACATAGCGATTAGCATTAGCGATTTTCAATTGCTTTTTTATACC
TTTTAATTAACAATTCTGTGAAAGCAGTGAACtgttatcagatagaataa
TATCTCACTTTGGCTACTTCATCATCTATTCAAATTCactttgttaaaag
tgattattggtcgtaaaaacagtttctcaaaatttgatgcgtggatagaa
atctctttataagggtatgtttg Run BLAST on NCBI protein sequence of TCONS_00002731-protein >TCONS_00002731-protein ID=TCONS_00002731-protein|Name=TCONS_00002731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MSCIRYRFRLXILALVTIGNVLYTIPISPYLLLFGRLLSGLGDCLRAIIV
AEVARSFAPDEVVSQISAVSCTYVVGFTLGPCINSAFVRADFWFLGVHVE
YSNGASLVTCFLYMIAFFLSLFFVSDLSREFDLKEALKSFSAEELEEASL
DSEQKLITNECFESDQEEQSTPMIENKSSFNTDNEMETMFVLRKFFTNLD
TILILVMSFTTMLCVVVYDLWVPLACIEILNWTNLDINLIYLTNGTISLL
FLLICIFKPPKTDKMIYLGYAAFPSIMIIFGAFFFFKFDTWHIIWLDAFL
WLVTCLCLSIIITAEELFLIXQKEYVNHLRDLEAP Run BLAST on NCBI transcript from alignment at sc0000021:746825..748901- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002731 ID=TCONS_00002731|Name=TCONS_00002731|organism=Clytia hemisphaerica|type=transcript|length=2077bp|location=Sequence derived from alignment at sc0000021:746825..748901- (Clytia hemisphaerica)
GTTTAAGTGTAGATCTTACAGTCAATGATGGCGCAGACAGGAGTTGCTTT
CAGCTACAAGCAATGGCTCAAAAAACGTCAAATAACTACCAAATTATTCT
ACTTTATTGGGCTTATCCTTGGAATTGAGTATTCATTTACATTTGCAACT
TTGCTCGTTTATTTAAAAGATTTCCTTCAAGTCAAAAACAATTCGTTGAA
TATCTTTTATAGTTGCATTTCTGGAATATACATCCTGTCTATGATTATAT
CATCAGTTTTCATTGGAAAGATATTTGACAGAACTCGGCGAANTGTTTAC
TTAAAAGATTTCCTTCAAGTCAAAAACAATTTGAATATCTTTTATAGTTG
CATTTCTGGAATATACATCCTGTCTATGATTATATCATCAGTTTTCGTTG
GAAAGATATTTGACAGAACTCGGCGAACGCGTCTAATATTCAGTTTGATC
TTAACGCTGGTGACAATTGGCAATGTCCTGTATACGATACCGATTTCGCC
TTANCATCTTAGCGCTGGTGACAATTGGCAATGTCCTGTATACGATACCG
ATTTCCCCTTATTTGTTATTATTTGGAAGATTACTGTCCGGTTTAGGGGA
TTGTCTTCGAGCAATCATTGTGGCTGAAGTAGCCCGCTCTTTCGCACCGG
ACGAAGTCGTCTCACAAATATCCGCTGTGTCTTGTACATATGTTGTGGGA
TTTACTCTTGGACCATGTATAAATTCTGCTTTTGTTAGAGCAGATTTTTG
GTTTTTGGGTGTGCATGTAGAATACTCAAACGGAGCTAGCTTAGTGACCT
GCTTTCTTTACATGATTGCCTTCTTTTTATCATTGTTTTTTGTCAGTGAT
TTATCGAGAGAATTTGACTTAAAAGAAGCTTTAAAAAGTTTTTCAGCAGA
AGAATTGGAAGAAGCTTCGTTGGATTCAGAGCAAAAACTCATCACCAATG
AATGTTTTGAATCAGATCAAGAAGAGCAGTCAACTCCTATGATCGAGAAT
AAGTCATCATTTAACACCGATAACGAAATGGAAACCATGTTTGTCTTACG
AAAATTTTTCACCAACCTTGATACAATTTTGATTCTGGTGATGTCTTTTA
CAACCATGCTCTGTGTAGTTGTTTATGACTTATGGGTACCTCTAGCATGC
ATCGAAATCTTAAATTGGACAAACTTGGATATAAATCTTATTTATCTGAC
AAATGGAACCATAAGCTTGTTATTTCTCCTCATATGCATTTTCAAACCAC
CCAAAACTGATAAGATGATTTACTTAGGTTATGCTGCTTTTCCATCAATC
ATGATTATATTTGGAGCATTCTTTTTCTTTAAGTTTGACACTTGGCATAT
AATATGGTTGGATGCCTTTTTATGGCTTGTTACATGTCTCTGTTTAAGCA
TTATTATTACAGCAGAGGAACTGTTTCTGATCNCTCAGAAGGAATACGTC
AATCATCTGCGCGACTTGGAAGCGCCCTAGGTCTGTTTACCGCCGCCTTC
ACCTTTCAGCACCTGAATTATTTTTGTCCATTAGTATTTTTTATATGTAT
TTTATTAATTTTGCTTTTGATCATTAGAAGAAGGCAGTTTTATGAGCCTG
TACCAATATTTTAATTGAAACACTTTAAGTAGGGTGTTCTTGCATATTGT
TGTTTTTCTTGAAGGGGATATTTTAATTCTTAGCCAGGNATTCTTACATT
TGCTGTTTTTCTTGAAGGAGATATTCTAATTCTTGGCCATGGAAAGTCGC
ATGACCTTCGCAACCGCGCACTCACGAAAAGTCTAACATTTTGAAATGGG
GAAAATAAAACAACTACAAGCTAGATTTTGCAGGCAGAACCGGCAACCGT
GTGGCACGAAACATAGCGATTAGCATTAGCGATTTTCAATTGCTTTTTTA
TACCTTTTAATTAACAATTCTGTGAAAGCAGTGAACTGTTATCAGATAGA
ATAATATCTCACTTTGGCTACTTCATCATCTATTCAAATTCACTTTGTTA
AAAGTGATTATTGGTCGTAAAAACAGTTTCTCAAAATTTGATGCGTGGAT
AGAAATCTCTTTATAAGGGTATGTTTG Coding sequence (CDS) from alignment at sc0000021:746825..748901- >TCONS_00002731 ID=TCONS_00002731|Name=TCONS_00002731|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000021:746825..748901- (Clytia hemisphaerica)
ATGTCCTGTATACGATACCGATTTCGCCTTANCATCTTAGCGCTGGTGAC
AATTGGCAATGTCCTGTATACGATACCGATTTCCCCTTATTTGTTATTAT
TTGGAAGATTACTGTCCGGTTTAGGGGATTGTCTTCGAGCAATCATTGTG
GCTGAAGTAGCCCGCTCTTTCGCACCGGACGAAGTCGTCTCACAAATATC
CGCTGTGTCTTGTACATATGTTGTGGGATTTACTCTTGGACCATGTATAA
ATTCTGCTTTTGTTAGAGCAGATTTTTGGTTTTTGGGTGTGCATGTAGAA
TACTCAAACGGAGCTAGCTTAGTGACCTGCTTTCTTTACATGATTGCCTT
CTTTTTATCATTGTTTTTTGTCAGTGATTTATCGAGAGAATTTGACTTAA
AAGAAGCTTTAAAAAGTTTTTCAGCAGAAGAATTGGAAGAAGCTTCGTTG
GATTCAGAGCAAAAACTCATCACCAATGAATGTTTTGAATCAGATCAAGA
AGAGCAGTCAACTCCTATGATCGAGAATAAGTCATCATTTAACACCGATA
ACGAAATGGAAACCATGTTTGTCTTACGAAAATTTTTCACCAACCTTGAT
ACAATTTTGATTCTGGTGATGTCTTTTACAACCATGCTCTGTGTAGTTGT
TTATGACTTATGGGTACCTCTAGCATGCATCGAAATCTTAAATTGGACAA
ACTTGGATATAAATCTTATTTATCTGACAAATGGAACCATAAGCTTGTTA
TTTCTCCTCATATGCATTTTCAAACCACCCAAAACTGATAAGATGATTTA
CTTAGGTTATGCTGCTTTTCCATCAATCATGATTATATTTGGAGCATTCT
TTTTCTTTAAGTTTGACACTTGGCATATAATATGGTTGGATGCCTTTTTA
TGGCTTGTTACATGTCTCTGTTTAAGCATTATTATTACAGCAGAGGAACT
GTTTCTGATCNCTCAGAAGGAATACGTCAATCATCTGCGCGACTTGGAAG
CGCCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002731-exon-sc0000021-1575043694:747269..748901 | TCONS_00002731-exon-sc0000021-1575043694:747269..748901 | Clytia hemisphaerica | exon |
| TCONS_00002731-exon-sc0000021-1575043694:746825..747214 | TCONS_00002731-exon-sc0000021-1575043694:746825..747214 | Clytia hemisphaerica | exon |
| TCONS_00002731-exon-sc0000021-1510915933:747269..748901 | TCONS_00002731-exon-sc0000021-1510915933:747269..748901 | Clytia hemisphaerica | exon |
| TCONS_00002731-exon-sc0000021-1510915933:746825..747214 | TCONS_00002731-exon-sc0000021-1510915933:746825..747214 | Clytia hemisphaerica | exon |
| TCONS_00002731-exon-sc0000021-1491911889:747269..748901 | TCONS_00002731-exon-sc0000021-1491911889:747269..748901 | Clytia hemisphaerica | exon |
| TCONS_00002731-exon-sc0000021-1491911889:746825..747214 | TCONS_00002731-exon-sc0000021-1491911889:746825..747214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:746825..748901 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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