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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002730 ID=TCONS_00002730|Name=TCONS_00002730|organism=Clytia hemisphaerica|type=transcript|length=467bp
TTTGATCAACCAAGGTCCAATGATATTTGCTCCCACACCAACAGCTCCCC
CAGAGAGTCCAACAGTAGCCCCGGCGATTGCAAAGCCTGCAATAACACTG
GCACCAGCTGTTACTGGGGCCAAGGCTATTGACACTGCAGTAACGGCAAA
ACTCGCCCCAACGAAGCCCACAACTCCACTAGCAACATTTGATATGTTGA
CATCCATGTGTGTTTCGTCGCATTGACCAGCAATTGCCTTCACGCTTTTG
ACCAATTCTTCCCTTTGAGATAACCAGGAATCAACCAAGACATCCAACCt
gtctttcttttcttcaaattcactGACCAAGTTTTTAAGGTCCCTCTCTG
TTACGGCTGAGACTTTTGGTTCTGTGCATTCATTTACAATCTTATGCGAA
GTAATTGTAGCTAATTGTATGGCTTTTGGAATAGCTTTTATCGGTACCTC
gatcatttttatttaat Run BLAST on NCBI transcript from alignment at sc0000021:712410..717033- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002730 ID=TCONS_00002730|Name=TCONS_00002730|organism=Clytia hemisphaerica|type=transcript|length=4624bp|location=Sequence derived from alignment at sc0000021:712410..717033- (Clytia hemisphaerica)
TTTGATCAACCAAGGTCCAATGATATTTGCTCCCACACCAACAGCTCCCC
CAGAGAGTCCAACAGTAGCCCCGGCGATTGCAAAGCCTGCAATAACACTG
GCACCAGCTGTTACTGGGGCCAAGGCTATTGACAATGCAGTAACGCCAAG
ACCTGCTCCAACGACGCCTGCAACTCCACCAGCAACATTTGATATGTTGA
CATCCATGTGTGTTTCGTCGCATTGACCAGCAATTGCCTTCACGCTTTTG
ACCAATTCTTCCCTTTGAGATAACCAGGAATCAACCAAGACATCCAACCT
GTCTTTCTTTTCTTCAAAGTCACTGACCAAGTTTTTAAGGTCCCTCTCTG
TTACGGCTGAGACTTTTGGTTCTGTGCATTCGTTTACAATCTTATGCGAA
GCCATTGTAGCTATTTGTATGGCTTTTGGAATAGCTTTTATTGGTACCTC
GATCATTTTTATTTAATTCTGTAAAAATAAACCAACAAGATTTTCGATCA
TTTGGAAGAGGGAAACAAACAATATGGATCAACTTTATAAAGTGAATACA
CAAAATTCTAAGGTTTTGTTTTTAAGTAAGAGTGACGTCGTTTAATTAAG
GCCGGCGCAAATGAATCCAACATTTGATCCAACATTATTGTTGGATCAAA
TGTTGGGTTCATTTGCGCAAGTTATAAAATTGCAACTTTTTAAGAAAATT
GTTGGAAATCATGTTGGATGAAGTTTGATCGCCGTCAAACTTTTCATCCA
ACATTTTTTATGAGATTGACGTCACTTTTATGTTGGTTTCAATGTCGGAT
ACATTTGCGTAATCATGTTGGATGAAGTTTGATCGCCGTCAAACTTTTCA
TCCAACATTTTTTATGAGATTGACGTCACTTTTATGTTGGTTTCAATGTC
GGATACATTTGCGTAATCATGTTGGAAGAAAATGTTTGACGTTTTTGCGC
AAATGACTTTTCGTCCAACATGACGTCCAACAATGAATTGGAAATGTTGG
ATTGAATACACAAAATTCTTTACTGAGTTAAATTTCAACCATAATATTGT
CTAGTCTATCTCGATGTTTATAATATTATAAGTTTCACTTTCACGTGCGT
TTATTGTGTCTGTTTGAGAATATGTAAGGTAGGGTAAAAATAAAGCACTG
CCGGTAGACGACCGAAAAAAATGAAAATGACTGAGAAAACTAACAGACAA
TACATAATATAAAAAAATGTTTCATTTTTTCAAAAATGCAGTCAAACGAA
TGAACGAACGAACGGACGAACGAACATGGGTTAATTTAAAGGACCTCCAC
CGGGGTCCAAAAATTGACTTTAGCCCCTCCAGAAAAATTTTCCCACAACG
CCACTGTCTGCCCGCATCGTTACAGGCTGGTAGCGATCATCAAATTAAGC
TTTGAGAAAAAGAATTTACTAGTTTGAAGAGGTCACCAATAGCAAGCACT
TCAAACCTTGGGACGAGATGGAGCTTTTACAAGTTCTTATTTGATTTGGT
TGGTTGTTAGCCAGTAATAAAAATTTTTCTGAAGAACGCATCATTTTAAT
TACTTCAAATGACCAATTATTTTTACAGGTCTTGGTCTTGCCATTTTCTC
AATTTTGGGGTAATTTATGTATTTTGTTCATAACTAATATATCCAGTATG
GTATCAAATCAAGGAACAAAAAAAAATTATTAAAGCATCTTATAAAAACT
CCATCTCATCTGCAAACCTTTGACGTATTGTGCTTTGACAGCTAATCTAA
GGATGTTTAAAAATCGTTCGGAAAAGGTACAAAATGGTGATTTTTGTAAT
GACTATTCAAGAGCCTTTTGAGCAACTGAACCTTTTTTTAAGTGGCCAAA
ACGCGCCGGAAACGTGATAATGATATACTGCTGACCAATTGGAATCAATT
AATATTTGGACTAGCATGTATGCATCCCTAAACAGTTTTTATTTTTTCAC
CTTGGCTATTTCTGGTTATTTCTTTCCCATGTGATTTATATTTAAACATT
TCGGAACTATATAGATTAGAAAACAACCTATTATGTACAGGCTTTGTCCG
CAAAGGACAGCTCTCATGATAAGCTAGAGTGAGCTTAACTTTTCGATGAC
GCCAACTCCAGTAAAACAAACAAGGAGCTCTTGACAAGGAAAACATCCAA
ATTTCAATTAGAAAAAAAGCTACTTGAAAAAACTTTGTAGTGTAGATTTT
TTATGACAAAGTAGCCCTTAGTTTAGGGTTGAGAGTGTCGTATTATTCAA
AAACTTGAGAGAAGTTGTCTTGTGGCCTCTATGTCATTGAAATGTCTTTA
AAATATCATTCAAAACGTTTTGCGCTACTTCACAATGGTTTGAAATATGA
AAATCTACTGGAAATTTCTCATCCTGGTGACGGGGTTCATGAACTGTACA
AAATTTAAAGAATTCCCCCTAATAAAAGATACAGTATGAATTTAAAATGA
GCTAAGCTGTGCGTATATGTTTATTTACAAATGTTTTAAATTTCGGCGAA
ACATTTTCAAATACGACGCTCCCTTATAGACTGACTCAGGCCCGGCGAAA
GCGGAGTGACTGGNCCCCCTAATAAAAGATACAATATGAATTTAAAATGA
GCTAAGCTGTGCGTATATGTTTATTTACAAATGTTTTAAATTTCGGCGAA
ACATTTTCAAATACGACGCTCCCTGATAGACTCTTTGCTTCTCAGGCCCG
GCGAAAGCAGGGTGACTGGGAGACTGGTGAGCCTCCCCAATTTTAAGAAA
ATGAGATTTTTTTCTCAAATTCCAAGCAGATTTTATCCCATTGCCCCTGC
AGCCTCCCTGCTTTTACGGTTGTTCCGCCGGGTATGCTTCTGGTTTGAAT
GGTAATCACTGGATTTATTTCCAGAAGTATTCTCATTTTATATGACGCCT
TTTGCAGATGATGACGGGAAAAGAGAAGAAATTTTGGCGAGAAGAAGTTT
TGGCGAATCGAGCCCATTCGCCAATTTTGGTGCAATTTGGTGGAATTTAT
TTTGGCGATTTAATAAAATTTCTAAATTTTGCGAGAATTTATTCTGGCGA
ACGACCCATTTTTATTCAATATTTTAACTAAAAAAAGAGGCCCCCTCTAG
TTGCTCTATCTATCTATAAACCCGCTCTACTTCCCCGAGGAATTGAATAT
CCAAAACAAAATATCAAACAAAGCTGAACAAAGAAATTACATTGTATTTA
AGTTATACTAGAGAAACTTCTGTGAGATAATGAATTAGAATTTTACGTTA
TATAAAATATGTCTTTCTCTCCGGTTATATGTATGTAAATGTTCACTTTA
GACTGTACTACTTCTTGTACGGGGCTGGTCATTTGTAATCTTGATCTGAC
GAATTTTGGCTATCTGCTGTGTCAAGTTATCTGCAATTTTCATGAAACTT
AATCCAGCTTCTGACTTTTCTTTTTTGTCAATCTTCCGGGAGTACCATGC
AATTTCACCAATCGAAACGGCTAATCCAACAACTGCAAATACCATTGCCG
TCTTACTGCCAGCCAACGCGGCCACTTTAGTCACGTCTACTATACCGTCG
ATAATTTGAGAAGCAGTCGTGATACTTTTAATTGCTTTTGCGCACATCAC
GATTTCCACAATGTCGGCTGCAGCTTTTGCAGCAAAACCAAATGAGCTAG
CACCGATGTCGATGTGTTGGCGCTGTTTGAGTGACTCGATCGTTGACGAT
ATTTTCTCGATTTCTTCAGAAAGTGCTTGAACTTCTTGCGTCATGATATC
ATCTTTCTTTATAAGTTCATCAGCTTCTTTGCATTTTTCTAAATTTAAAA
CGAGATTAAGACATTTAAGTCTTACCGGCTATAATTTGCGCCTTTGTTTT
TACAAAGGTTCAGCGATGAATACACGATTGGGAAAGTCCTTTTTCTTATA
AGACTCAAAAGTTTAAGATTTTTTTAAGAATTATGCTGAGCCTCAAAAGT
TTTGTTTAATTTTTCTTTCTTCAGTTAGGGTTTTTCAGTTCTTCGGGGTT
TTTGATTAGTTTTTTTTCTTTTCATTTTTTCGCTTTCAATACTTGAAAGG
AGCATGAAAGTTCAACAAGTATTACTAAGAATATTTTAAGGCGAGACTCA
TTTCGATTTATGTAATTCTTATATAAAAAATAAACTGTGTAGAGAAGCGC
ACTTACTTTTGATCAACCAAGGTCCAATGATATTTGCTCCCACACCAACA
GCTCCCCCAGAAAGTCCAACAGTAACCGCGGCGATTGAAAAGCCTGCAAT
AACACTGGCACCAGCTGTTACTGGAGCCAAGGCTATTGACACTGCAGTAA
CGGCAAAACTCGCCCCAACGAAGCCCACAACTCCACTAGCAACATTTGAT
ATGTTGACATCCATGTGTGTTTCGTCGCATTGACCAGCAATTGCCTTCAC
GCTTTTGACCAATTCTTCCCTTTGAGATAACCAGGAATCAACCAAGACAT
CCAACCTGTCTTTCTTTTCTTCAAATTCACTGACCAAGTTTTTAAGGTCC
CTCTCTGTTACGGCTGAGACTTTTGGTTCTGTGCATTCATTTACAATCTT
ATGCGAAGTAATTGTAGCTAATTGTATGGCTTTTGGAATAGCTTTTATCG
GTACCTCGATCATTTTTATTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002730-exon-sc0000021-1575043694:716910..717033 | TCONS_00002730-exon-sc0000021-1575043694:716910..717033 | Clytia hemisphaerica | exon |
| TCONS_00002730-exon-sc0000021-1575043694:712410..712752 | TCONS_00002730-exon-sc0000021-1575043694:712410..712752 | Clytia hemisphaerica | exon |
| TCONS_00002730-exon-sc0000021-1510915933:716910..717033 | TCONS_00002730-exon-sc0000021-1510915933:716910..717033 | Clytia hemisphaerica | exon |
| TCONS_00002730-exon-sc0000021-1510915933:712410..712752 | TCONS_00002730-exon-sc0000021-1510915933:712410..712752 | Clytia hemisphaerica | exon |
| TCONS_00002730-exon-sc0000021-1491911889:716910..717033 | TCONS_00002730-exon-sc0000021-1491911889:716910..717033 | Clytia hemisphaerica | exon |
| TCONS_00002730-exon-sc0000021-1491911889:712410..712752 | TCONS_00002730-exon-sc0000021-1491911889:712410..712752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:712410..717033 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008405 | ApoL |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042157 | lipoprotein metabolic process |
| GO:0006869 | lipid transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008289 | lipid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006869 |
lipid transport |
| biological_process |
GO:0042157 |
lipoprotein metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008289 |
lipid binding |
Blast
The following BLAST results are available for this feature:
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