TCONS_00002730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002730
Unique NameTCONS_00002730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002730 ID=TCONS_00002730|Name=TCONS_00002730|organism=Clytia hemisphaerica|type=transcript|length=467bp
TTTGATCAACCAAGGTCCAATGATATTTGCTCCCACACCAACAGCTCCCC
CAGAGAGTCCAACAGTAGCCCCGGCGATTGCAAAGCCTGCAATAACACTG
GCACCAGCTGTTACTGGGGCCAAGGCTATTGACACTGCAGTAACGGCAAA
ACTCGCCCCAACGAAGCCCACAACTCCACTAGCAACATTTGATATGTTGA
CATCCATGTGTGTTTCGTCGCATTGACCAGCAATTGCCTTCACGCTTTTG
ACCAATTCTTCCCTTTGAGATAACCAGGAATCAACCAAGACATCCAACCt
gtctttcttttcttcaaattcactGACCAAGTTTTTAAGGTCCCTCTCTG
TTACGGCTGAGACTTTTGGTTCTGTGCATTCATTTACAATCTTATGCGAA
GTAATTGTAGCTAATTGTATGGCTTTTGGAATAGCTTTTATCGGTACCTC
gatcatttttatttaat
Run BLAST on NCBI

transcript from alignment at sc0000021:712410..717033-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002730 ID=TCONS_00002730|Name=TCONS_00002730|organism=Clytia hemisphaerica|type=transcript|length=4624bp|location=Sequence derived from alignment at sc0000021:712410..717033- (Clytia hemisphaerica)
TTTGATCAACCAAGGTCCAATGATATTTGCTCCCACACCAACAGCTCCCC CAGAGAGTCCAACAGTAGCCCCGGCGATTGCAAAGCCTGCAATAACACTG GCACCAGCTGTTACTGGGGCCAAGGCTATTGACAATGCAGTAACGCCAAG ACCTGCTCCAACGACGCCTGCAACTCCACCAGCAACATTTGATATGTTGA CATCCATGTGTGTTTCGTCGCATTGACCAGCAATTGCCTTCACGCTTTTG ACCAATTCTTCCCTTTGAGATAACCAGGAATCAACCAAGACATCCAACCT GTCTTTCTTTTCTTCAAAGTCACTGACCAAGTTTTTAAGGTCCCTCTCTG TTACGGCTGAGACTTTTGGTTCTGTGCATTCGTTTACAATCTTATGCGAA GCCATTGTAGCTATTTGTATGGCTTTTGGAATAGCTTTTATTGGTACCTC GATCATTTTTATTTAATTCTGTAAAAATAAACCAACAAGATTTTCGATCA TTTGGAAGAGGGAAACAAACAATATGGATCAACTTTATAAAGTGAATACA CAAAATTCTAAGGTTTTGTTTTTAAGTAAGAGTGACGTCGTTTAATTAAG GCCGGCGCAAATGAATCCAACATTTGATCCAACATTATTGTTGGATCAAA TGTTGGGTTCATTTGCGCAAGTTATAAAATTGCAACTTTTTAAGAAAATT GTTGGAAATCATGTTGGATGAAGTTTGATCGCCGTCAAACTTTTCATCCA ACATTTTTTATGAGATTGACGTCACTTTTATGTTGGTTTCAATGTCGGAT ACATTTGCGTAATCATGTTGGATGAAGTTTGATCGCCGTCAAACTTTTCA TCCAACATTTTTTATGAGATTGACGTCACTTTTATGTTGGTTTCAATGTC GGATACATTTGCGTAATCATGTTGGAAGAAAATGTTTGACGTTTTTGCGC AAATGACTTTTCGTCCAACATGACGTCCAACAATGAATTGGAAATGTTGG ATTGAATACACAAAATTCTTTACTGAGTTAAATTTCAACCATAATATTGT CTAGTCTATCTCGATGTTTATAATATTATAAGTTTCACTTTCACGTGCGT TTATTGTGTCTGTTTGAGAATATGTAAGGTAGGGTAAAAATAAAGCACTG CCGGTAGACGACCGAAAAAAATGAAAATGACTGAGAAAACTAACAGACAA TACATAATATAAAAAAATGTTTCATTTTTTCAAAAATGCAGTCAAACGAA TGAACGAACGAACGGACGAACGAACATGGGTTAATTTAAAGGACCTCCAC CGGGGTCCAAAAATTGACTTTAGCCCCTCCAGAAAAATTTTCCCACAACG CCACTGTCTGCCCGCATCGTTACAGGCTGGTAGCGATCATCAAATTAAGC TTTGAGAAAAAGAATTTACTAGTTTGAAGAGGTCACCAATAGCAAGCACT TCAAACCTTGGGACGAGATGGAGCTTTTACAAGTTCTTATTTGATTTGGT TGGTTGTTAGCCAGTAATAAAAATTTTTCTGAAGAACGCATCATTTTAAT TACTTCAAATGACCAATTATTTTTACAGGTCTTGGTCTTGCCATTTTCTC AATTTTGGGGTAATTTATGTATTTTGTTCATAACTAATATATCCAGTATG GTATCAAATCAAGGAACAAAAAAAAATTATTAAAGCATCTTATAAAAACT CCATCTCATCTGCAAACCTTTGACGTATTGTGCTTTGACAGCTAATCTAA GGATGTTTAAAAATCGTTCGGAAAAGGTACAAAATGGTGATTTTTGTAAT GACTATTCAAGAGCCTTTTGAGCAACTGAACCTTTTTTTAAGTGGCCAAA ACGCGCCGGAAACGTGATAATGATATACTGCTGACCAATTGGAATCAATT AATATTTGGACTAGCATGTATGCATCCCTAAACAGTTTTTATTTTTTCAC CTTGGCTATTTCTGGTTATTTCTTTCCCATGTGATTTATATTTAAACATT TCGGAACTATATAGATTAGAAAACAACCTATTATGTACAGGCTTTGTCCG CAAAGGACAGCTCTCATGATAAGCTAGAGTGAGCTTAACTTTTCGATGAC GCCAACTCCAGTAAAACAAACAAGGAGCTCTTGACAAGGAAAACATCCAA ATTTCAATTAGAAAAAAAGCTACTTGAAAAAACTTTGTAGTGTAGATTTT TTATGACAAAGTAGCCCTTAGTTTAGGGTTGAGAGTGTCGTATTATTCAA AAACTTGAGAGAAGTTGTCTTGTGGCCTCTATGTCATTGAAATGTCTTTA AAATATCATTCAAAACGTTTTGCGCTACTTCACAATGGTTTGAAATATGA AAATCTACTGGAAATTTCTCATCCTGGTGACGGGGTTCATGAACTGTACA AAATTTAAAGAATTCCCCCTAATAAAAGATACAGTATGAATTTAAAATGA GCTAAGCTGTGCGTATATGTTTATTTACAAATGTTTTAAATTTCGGCGAA ACATTTTCAAATACGACGCTCCCTTATAGACTGACTCAGGCCCGGCGAAA GCGGAGTGACTGGNCCCCCTAATAAAAGATACAATATGAATTTAAAATGA GCTAAGCTGTGCGTATATGTTTATTTACAAATGTTTTAAATTTCGGCGAA ACATTTTCAAATACGACGCTCCCTGATAGACTCTTTGCTTCTCAGGCCCG GCGAAAGCAGGGTGACTGGGAGACTGGTGAGCCTCCCCAATTTTAAGAAA ATGAGATTTTTTTCTCAAATTCCAAGCAGATTTTATCCCATTGCCCCTGC AGCCTCCCTGCTTTTACGGTTGTTCCGCCGGGTATGCTTCTGGTTTGAAT GGTAATCACTGGATTTATTTCCAGAAGTATTCTCATTTTATATGACGCCT TTTGCAGATGATGACGGGAAAAGAGAAGAAATTTTGGCGAGAAGAAGTTT TGGCGAATCGAGCCCATTCGCCAATTTTGGTGCAATTTGGTGGAATTTAT TTTGGCGATTTAATAAAATTTCTAAATTTTGCGAGAATTTATTCTGGCGA ACGACCCATTTTTATTCAATATTTTAACTAAAAAAAGAGGCCCCCTCTAG TTGCTCTATCTATCTATAAACCCGCTCTACTTCCCCGAGGAATTGAATAT CCAAAACAAAATATCAAACAAAGCTGAACAAAGAAATTACATTGTATTTA AGTTATACTAGAGAAACTTCTGTGAGATAATGAATTAGAATTTTACGTTA TATAAAATATGTCTTTCTCTCCGGTTATATGTATGTAAATGTTCACTTTA GACTGTACTACTTCTTGTACGGGGCTGGTCATTTGTAATCTTGATCTGAC GAATTTTGGCTATCTGCTGTGTCAAGTTATCTGCAATTTTCATGAAACTT AATCCAGCTTCTGACTTTTCTTTTTTGTCAATCTTCCGGGAGTACCATGC AATTTCACCAATCGAAACGGCTAATCCAACAACTGCAAATACCATTGCCG TCTTACTGCCAGCCAACGCGGCCACTTTAGTCACGTCTACTATACCGTCG ATAATTTGAGAAGCAGTCGTGATACTTTTAATTGCTTTTGCGCACATCAC GATTTCCACAATGTCGGCTGCAGCTTTTGCAGCAAAACCAAATGAGCTAG CACCGATGTCGATGTGTTGGCGCTGTTTGAGTGACTCGATCGTTGACGAT ATTTTCTCGATTTCTTCAGAAAGTGCTTGAACTTCTTGCGTCATGATATC ATCTTTCTTTATAAGTTCATCAGCTTCTTTGCATTTTTCTAAATTTAAAA CGAGATTAAGACATTTAAGTCTTACCGGCTATAATTTGCGCCTTTGTTTT TACAAAGGTTCAGCGATGAATACACGATTGGGAAAGTCCTTTTTCTTATA AGACTCAAAAGTTTAAGATTTTTTTAAGAATTATGCTGAGCCTCAAAAGT TTTGTTTAATTTTTCTTTCTTCAGTTAGGGTTTTTCAGTTCTTCGGGGTT TTTGATTAGTTTTTTTTCTTTTCATTTTTTCGCTTTCAATACTTGAAAGG AGCATGAAAGTTCAACAAGTATTACTAAGAATATTTTAAGGCGAGACTCA TTTCGATTTATGTAATTCTTATATAAAAAATAAACTGTGTAGAGAAGCGC ACTTACTTTTGATCAACCAAGGTCCAATGATATTTGCTCCCACACCAACA GCTCCCCCAGAAAGTCCAACAGTAACCGCGGCGATTGAAAAGCCTGCAAT AACACTGGCACCAGCTGTTACTGGAGCCAAGGCTATTGACACTGCAGTAA CGGCAAAACTCGCCCCAACGAAGCCCACAACTCCACTAGCAACATTTGAT ATGTTGACATCCATGTGTGTTTCGTCGCATTGACCAGCAATTGCCTTCAC GCTTTTGACCAATTCTTCCCTTTGAGATAACCAGGAATCAACCAAGACAT CCAACCTGTCTTTCTTTTCTTCAAATTCACTGACCAAGTTTTTAAGGTCC CTCTCTGTTACGGCTGAGACTTTTGGTTCTGTGCATTCATTTACAATCTT ATGCGAAGTAATTGTAGCTAATTGTATGGCTTTTGGAATAGCTTTTATCG GTACCTCGATCATTTTTATTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001465XLOC_001465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002730-exon-sc0000021-1575043694:716910..717033TCONS_00002730-exon-sc0000021-1575043694:716910..717033Clytia hemisphaericaexon
TCONS_00002730-exon-sc0000021-1575043694:712410..712752TCONS_00002730-exon-sc0000021-1575043694:712410..712752Clytia hemisphaericaexon
TCONS_00002730-exon-sc0000021-1510915933:716910..717033TCONS_00002730-exon-sc0000021-1510915933:716910..717033Clytia hemisphaericaexon
TCONS_00002730-exon-sc0000021-1510915933:712410..712752TCONS_00002730-exon-sc0000021-1510915933:712410..712752Clytia hemisphaericaexon
TCONS_00002730-exon-sc0000021-1491911889:716910..717033TCONS_00002730-exon-sc0000021-1491911889:716910..717033Clytia hemisphaericaexon
TCONS_00002730-exon-sc0000021-1491911889:712410..712752TCONS_00002730-exon-sc0000021-1491911889:712410..712752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:712410..717033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.311393 0.609299 0 0.293076 0.353583 0 1.15878 1.57886 1.53248 0.824232 30.1798 40.7447 27.9537 23.714 2.78718 4.33805 15.2024 14.0726 2.92497 1.1673 0.946002 1.29008 0.590556 2.10823 0.377109 0.402461 0.152626 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008405ApoL
Vocabulary: Biological Process
TermDefinition
GO:0042157lipoprotein metabolic process
GO:0006869lipid transport
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
biological_process GO:0042157 lipoprotein metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008289 lipid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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