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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002720 ID=TCONS_00002720|Name=TCONS_00002720|organism=Clytia hemisphaerica|type=transcript|length=10522bp transcript from alignment at sc0000021:648691..695450- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002720 ID=TCONS_00002720|Name=TCONS_00002720|organism=Clytia hemisphaerica|type=transcript|length=46760bp|location=Sequence derived from alignment at sc0000021:648691..695450- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002720 vs. Swiss-Prot (Human)
Match: VWF (von Willebrand factor OS=Homo sapiens GN=VWF PE=1 SV=4) HSP 1 Score: 615.15 bits (1585), Expect = 1.218e-177 Identity = 380/1257 (30.23%), Postives = 590/1257 (46.94%), Query Frame = 1
Query: 202 RREQNMCSVWGSGHYQTFDGTTFNYPGQCTYALAIDCRPGKDDFAVHIENGVNCTAGKSCSRAVVVYLNDIPH-RISFDSTFTKDGKKVTLPYADQDVAVSRHAGYTYLDAWNGKLLVKYDGNNGVYVQVGDEFHNGAVCGLCGNNN-GPTDDFLKPGGQQAKNPTEYGNSWAKPIFGQTCKQVIGEVDYCNGTKDLVRLLSETKCKELKRSEVFTKCRQMVNPEPYYKACVQEACKCQGDHKCTCGAFEQYSRECLRHGITA-NWRSEDQCPVQCTDGKVFMECGPSCSAECGQKGVISNCKTGCIDGCHCPKGTVLSKGVCIPETQCPCLHNGNSYNHGVTVKMPGGCKNCTCNGGEWDCNNMECDGTASLYGNGHYNTFDGKSFSYRNTCPSILVSHRGKAPFSVITDRQSCAS---KTCYMTIIIVY---KTNQIKLSTELGKFLASVNDLGTKLPIVSNKGFRVEAVSSMIRIETTEGLRVTWDGKSRVNIKIPPSFKNQVSGLLGNFNGKTIDDFTEVSGDLAHSEIE-FGNSWLLPSKCKPLSSTDFSLTPCEANHQNAQVAETKCDILNSGPFKKCHAMVDTVKYFDNCKQDVCGCGNHGSECFCAVLSAYAAECAMAGVEMKGWRKTSGCEVTCPVGQSYQECSSSCTHSCSDVITPDAKCNEDCIEGCACPKGMVKKDDISNVCVAKTACGCQVEDKLIANGGRVQKGCNTCVCREGSLVCTTLKCKSDIV-----------------KCKPDMVYTTCLP--------TCPNTCATKQLGQTCLADKQKCVSGCTCPDGTIEHDGKCITPEQCPCFHDGKTYEENSKMSRGCNDCICKSGKWKCTEDNCPGVCSVFGDPHYKTFDGKIFDYQGRCKHTMVSDTCAGQPSKYKKEQIHVEVNTQACGSQEVTCAKEITAIIHGSTFILKKGDKKAVIKPALEDKPTFKVYDYAGSYVHIVTDHGISLMWDNGTRLYITVQPALAGKLCGLCGNYDGSEANDFVTIQGDTTASATIFGDSWADDDSCPKAKEI-----EDTCKARPHRLDPSKKECSIIKSDVFKQCHHAVDPSIYYDRCVFDVCGCDQLGDCDCICDAVGAYQKACQDEGIYIGWRKGHSICEKEMCCPTNM---------TYQIKGQACPPTCQYPKGDPNCPTKFVEGC--QCPVGMVQKVDRPNGNVFCVPPSECVYCEMNGHRYIDGERVPHKPGTAEGDET---EITNPDCQECVCNKGKVV 3810
R CS++GS TFDG+ +++ G C+Y LA C+ +NG + + VYL + + + T T+ ++V++PYA + + + AGY L + + DG+ V + D + N CGLCGN N DDF+ G +P ++ NSWA Q C++ CN + ++ +C+ LK + VF +C +V+PEP+ C + C+C G +C C A +Y+R C + G+ W C C G + +C C+ C + C+ C+DGC CP+G +L +G+C+ T+CPC+H+G Y G ++ C C C +W C+N EC G + G H+ +FD + F++ C +L FS++ + CA C ++ + + +KL G +++ +LP++ V++ +R+ E L++ WDG+ R+ +K+ P + + GL GN+NG DDF SG LA +E FGN+W L C+ L PC N + + +E C +L S F+ CH V + Y NC+ DVC C + G EC C L++YAA CA GV + WR+ CE+ CP GQ Y +C + C +C + PD +CNE C+EGC CP G+ D CV K C C + ++ C C +G + CT ++ C+P MV C C TC L C++ CVSGC CP G + H+ +C+ E+CPCFH GK Y + GCN C+C+ KW CT+ C CS G HY TFDG + + G C++ +V D C P ++ + V + C V C K +T ++ G L G+ +K ++D+ F+V + +G Y+ ++ +S++WD + + ++ K+CGLCGN+DG + ND + FG+SW C +++ TC + C I+ SDVF+ C+ VDP Y D C++D C C+ +GDC C CD + AY C G + WR ++C + C N+ Y AC TCQ+P+ CP + VEGC CP G + +D CV P +C CE+ G R+ G++V P E + ++ N C+ C G VV
Sbjct: 29 RSSTARCSLFGSDFVNTFDGSMYSFAGYCSYLLAGGCQKRSFSIIGDFQNGKRVS--------LSVYLGEFFDIHLFVNGTVTQGDQRVSMPYASKGLYLETEAGYYKLSGEAYGFVARIDGSGNFQVLLSDRYFN-KTCGLCGNFNIFAEDDFMTQEGTLTSDPYDFANSWALSSGEQWCERASPPSSSCNISSGEMQKGLWEQCQLLKSTSVFARCHPLVDPEPFVALCEKTLCECAGGLECACPALLEYARTCAQEGMVLYGWTDHSACSPVCPAGMEYRQCVSPCARTCQSLHINEMCQERCVDGCSCPEGQLLDEGLCVESTECPCVHSGKRYPPGTSLSR--DCNTCICRNSQWICSNEECPGECLVTGQSHFKSFDNRYFTFSGICQYLLARDCQDHSFSIVIETVQCADDRDAVCTRSVTVRLPGLHNSLVKLKHGAG---VAMDGQDVQLPLLKGDLRIQHTVTASVRLSYGEDLQMDWDGRGRLLVKLSPVYAGKTCGLCGNYNGNQGDDFLTPSG-LAEPRVEDFGNAWKLHGDCQDLQKQHSD--PCALNPRMTRFSEEACAVLTSPTFEACHRAVSPLPYLRNCRYDVCSCSD-GRECLCGALASYAAACAGRGVRV-AWREPGRCELNCPKGQVYLQCGTPCNLTCRSLSYPDEECNEACLEGCFCPPGLYM--DERGDCVPKAQCPCYYDGEIFQPEDIFSDHHTMCYCEDGFMHCTMSGVPGSLLPDAVLSSPLSHRSKRSLSCRPPMVKLVCPADNLRAEGLECTKTCQNYDL--ECMS--MGCVSGCLCPPGMVRHENRCVALERCPCFHQGKEYAPGETVKIGCNTCVCQDRKWNCTDHVCDATCSTIGMAHYLTFDGLKYLFPGECQYVLVQDYCGSNPGTFR-----ILVGNKGCSHPSVKCKKRVTILVEGGEIELFDGEVN--VKRPMKDETHFEVVE-SGRYIILLLGKALSVVWDRHLSISVVLKQTYQEKVCGLCGNFDGIQNNDLTSSNLQVEEDPVDFGNSWKVSSQCADTRKVPLDSSPATCHNNIMKQTMVDSSCRILTSDVFQDCNKLVDPEPYLDVCIYDTCSCESIGDCACFCDTIAAYAHVCAQHGKVVTWRTA-TLCPQS-CEERNLRENGYECEWRYNSCAPACQVTCQHPE-PLACPVQCVEGCHAHCPPGKI--LDELLQT--CVDPEDCPVCEVAGRRFASGKKVTLNPSDPEHCQICHCDVVNLTCEACQEPGGLVV 1245 HSP 2 Score: 110.538 bits (275), Expect = 1.851e-23 Identity = 90/369 (24.39%), Postives = 161/369 (43.63%), Query Frame = 1
Query: 217 MCSVWGSGHYQTFDGTTFNYPGQCTYALAIDCRPGKDDFAVHIENGVNCTAG--KSCSRAVVVYLNDIPHRISFDSTFTKDGKKVTLPYADQDVAVSRHAGYTYLDAWN--GKLLVKYDGNNGVYVQVGDEFHNGAVCGLCG--NNNGPTDDFLKPGGQQAKNPTEYGNSWAKPIFGQTCKQVIGEVDYCNGTKDLVRLLSETKCKELKRSEVFTKCRQMVNPEPYYKACVQEACKCQGDHKCTCGAFEQYSRECLRHGITANWRSEDQCPVQCTDGKVFMECGPSCSAECGQKGVISNCKTGCIDGCHCPKGTVLSKGVCIPETQCP-CLHNGNSYNHGVTVKMPGG--CKNCTC-NGGEWDCNNMEC 1293
+C+ + H TFDG F G C+Y L + + D V + NG C+ G + C +++ V + + + D T +G+ V++PY ++ V+ + + +N G + NN +Q+ + GLCG + NG +DF+ G + W GQTC+ ++ E C L+ ++ ++ +F +C +++ P +Y C Q++C + C Y+ C +G+ +WR+ D C + C V+ C C C G +S+C +GC CP V+ +G C+PE C C+ + + +P C+ CTC +G + +C C
Sbjct: 1949 VCTGSSTRHIVTFDGQNFKLTGSCSYVLFQN---KEQDLEVILHNGA-CSPGARQGCMKSIEVKHSALSVELHSDMEVTVNGRLVSVPYVGGNMEVNVYGAIMHEVRFNHLGHIFTFTPQNNEFQLQLSPKTFASKTYGLCGICDENG-ANDFMLRDGTVTTDWKTLVQEWTVQRPGQTCQPILEE--QC--------LVPDSSHCQVLLLPLFAECHKVLAPATFYAICQQDSCH----QEQVCEVIASYAHLCRTNGVCVDWRTPDFCAMSCPPSLVYNHCEHGCPRHC--DGNVSSCGDHPSEGCFCPPDKVMLEGSCVPEEACTQCIGEDGVQHQFLEAWVPDHQPCQICTCLSGRKVNCTTQPC 2296 HSP 3 Score: 85.8853 bits (211), Expect = 4.673e-16 Identity = 93/393 (23.66%), Postives = 146/393 (37.15%), Query Frame = 1
Query: 2671 NCPGVCSVFGDPHYKTFDGKIFDYQGRCKHTMVSDTCAGQPSKYKKEQIHVEVNTQAC--GSQEVTCAKEITAIIHGSTFILKKGDKKAVIKPALEDKP----TFKVYDYAGSYVHIVTDH--GISLMWDNGTRLYITVQP-ALAGKLCGLCGNYDGSEANDFVTIQGDTTASATIFGDSWADDDSCPKAKEI-EDTCKARPHRLDPSKKECSIIKSDVFKQCHHAVDPSIYYDRCVFDVCGCDQLGDCDCICDAVGAYQKACQDEGIYIGWRKGHSICEKEMCCPTNMTYQIKGQACPPTCQYPKGDPNCPTKFVEGCQCPVGMVQKVDRPNGNVFCVPPSECVYC---EMNGHRYIDGERVPHKPGTAEGDETEITNPDCQECVCNKGKVV 3810
CP VC+ H TFDG+ F G C + + + K++ + V ++ AC G+++ C K I + H + + D + + L P +V Y + +H I + + P A K GLCG D + ANDF+ G T W + I E+ C L P C ++ +F +CH + P+ +Y C D C +Q +C+ + +Y C+ G+ + WR C M CP ++ Y CP C +C EGC CP D+ CVP C C + H++++ H+P CQ C C G+ V
Sbjct: 1945 TCPCVCTGSSTRHIVTFDGQNFKLTGSCSYVLFQN---------KEQDLEVILHNGACSPGARQ-GCMKSI-EVKHSALSVELHSDMEVTVNGRLVSVPYVGGNMEVNVYGAIMHEVRFNHLGHIFTFTPQNNEFQLQLSPKTFASKTYGLCGICDENGANDFMLRDGTVTTDWKTLVQEWTVQRPGQTCQPILEEQC------LVPDSSHCQVLLLPLFAECHKVLAPATFYAICQQDSCHQEQ------VCEVIASYAHLCRTNGVCVDWRTP-DFC--AMSCPPSLVYNHCEHGCPRHCD--GNVSSCGDHPSEGCFCP------PDKVMLEGSCVPEEACTQCIGEDGVQHQFLEAWVPDHQP--------------CQICTCLSGRKV 2289 The following BLAST results are available for this feature:
BLAST of TCONS_00002720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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