TCONS_00002712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002712
Unique NameTCONS_00002712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002712 ID=TCONS_00002712|Name=TCONS_00002712|organism=Clytia hemisphaerica|type=transcript|length=1050bp
ACACAATCTACAACAACAGTTAGAATATCAACGAACATTTACACTGAACC
ACCGCTTACTACCGAACCACAAGTTAAAGAAACTACTACAGAACAATCAA
CAACAGAATCTTCGACAACAGAATCACAAACAACAGAATCTTCAACAACA
GAATCACCAACAACAAAATCTTCAACAACTCAATCGCAAACAACACCAGA
GGCTTCAACAATTCCATCACAATCAACAACAGAAGCTTCGACAACAGAGG
CTGCAACAACTCAATCACAAACTACACCAGAAACCTCAACAACGCAATCA
ACGATACCGACAACAGTGACTACCCCAATCGTCACAACTTCACCTCAATG
TCCTTCGATGCAAGTATACAGTACCAACTGTACCAGTGAATATCATTGTG
ATTCGAGAGAAATGTGTCAACCAGTGCAATACGCAGGATGCTGTTGTCCT
AATGGCGGTTACAAGATCGGTGATATGTGTGTTCCACAAAAAAATGAATG
TCCATGTGTCAATAATGGTATTGTCAAGGCGCCAGGTGAAACATGGAAAC
CAAATGATCATGAATTCTGTCGTTGCAACGGTGATACCCAAGAATGTGTA
CCAACATGTCCAGAATCTTTGAAATGTAAACCATACGAGAAGAAGATCTT
CACGGGTCCATCAGAAGATGGAGAGTGCTGCAAATGTGTACCAAGTTGTC
AGTattGTAAGATTGGCTCTCACAAATACGTTCCTATTGGAGAGAAGTGG
AGTATCAGCCGTGATGAGAATTCGTGTGTCGAGGGACAATGTTTGTTGGA
TGAGGATGGTGAATGcgccattttggaaaaagaTCAAATTATCTGTGAAA
AACCATGTCCAAAGGATATGAAACGAAGCACAAATGGAACTTGTTGTGAT
TGTGAACCAACAACGCAAGTGTCGACAACTCCTTCGACAACAGAAGCTTC
AACAACAATAGAATCCTCGACAACAAAATCACAATCAACAACAGAATCCT
CAACAACTCAATCACAATCAACCACAGAGGCTGCAACAACTCCATCACAA
Run BLAST on NCBI

transcript from alignment at sc0000021:640462..645838-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002712 ID=TCONS_00002712|Name=TCONS_00002712|organism=Clytia hemisphaerica|type=transcript|length=5377bp|location=Sequence derived from alignment at sc0000021:640462..645838- (Clytia hemisphaerica)
ACACAATCTACAACAACAGTTAGAATATGTAAGAAGCCTTGTGTTTGTTA
ATTTTTCTATGACCAAATTTAGCTTTACTTTGATTCGAGGCGCGAAAAAA
AGTAGAGTATCTCCCAGACATTTTAGGCTGTTTTCCTAGCAACTTTAGAT
TACTCTGAAACTCTTATTTCTTTCTTTCAGCAACGAACATTTACACTGAA
CCACCGCTTACTACCGAACCACAAGTTAAAGGTAGATTATTTTGAATTTT
GTGCATATTTTCAAATAAAGAAATCTCTATATTTTTGTGAGGAGCCGTCA
AATTAAGTTCCAATCCAGGAAATTGTCGCGTTCTATCCAGGAAGTGCAAT
CGCCCGGGAGGCAATGTTTTAGAATCAATATTTTCAAAAAAAGATTGGTT
ATTTTATACAAGCCTTTGCTATGTTTGAAACTTTAGAAACTACTACAGAA
CAATCAACAACAGAATCTTCGACAACAGAATCACAAACAACAGAATCTTC
AACAACAGAATCACCAACAACAAAATCTTCAACAACTCAATCGCAAACAA
CACCAGAGGCTTCAACAATTCCATCACAATCAACAACAGAAGCTTCGACA
ACAGAGGCTGCAACAACTCAATCACAAACTACACCAGAAACCTCAACAAC
GCAATCAACGATACCGACAACAGTGACTACCCCAATCGTCACAACTTCAC
CTCGTAAGTTACCTTTTTAACGCCGTCAATTCAGACTTACACAATTTTTC
GTTTTCTTTAAAAATCCTAAGTCCGTCAAAAACCAGTTTACATAAATCAA
TGTGGCATAAAAAACTTTAAGATATAAAAGGAGTATATCGTATTAAAACA
ATTTTTCTTTTATTGTTTTGTAAGAAAGTTTTAGTCTTGAATCACTTTCG
AACGCTTATGGCCTGCCATCTCAGTCGGTAGAGTATTCGCCTTACCTTTC
AAGGGTTGTGGGCTCGATCCCCGGTCACTGCCAACTCAGCGAAAAAGCAG
CTTAGATCGGTAATCTGACCTAGGCGGTAAGTTAGTGGAAACTGAGAATA
TGTGCGGCGCTCTACCTCAGCATTCAACCTCCCAGGTCTAGCGCAAATAA
AGAAGGGAATGGACTCCCTCACTCCGGTTTCGTTGACAGCCACCAGATGA
TGCTTACTTAGAATTAAATAAACCATAAATGGACTGTTCCATTTAAAATC
CATACAGAAGGGGGGGGGGGCTGGACGAACGTTTTCAAGCAAAAAAAGTA
ATTCTTGAAAATGTGTGGATACCTCCTGGAAAATGGCAAAATTGGCAAAA
AAAACCCTTAGAAAAAATTTTTTCATACCTTAAAGTGAGGTGGTGAACTA
AAATCAGTCATTTTCCCCTTGGAAGTCTTAGAATGATTTTTAACCCCTGG
AACAAATAAAATCCTTTTCCTTAGAATGAATACTATAAAATAGAATGGCC
CAATGCAGTGCGAATATTCTGTAAATAACGCTTCTTTTTCAAACACTTTT
CAGAATGTCCTTCGATGCAAGTATACAGTACCAACTGTACCAGTGAATAT
CATTGTGATTCGAGAGAAATGTGTCAACCAGTGCAATACGCAGGATGCTG
TTGTCCTAATGGCGGTTACAAGATCGGTGATATGTGTGTTCCACAAAAAA
ATGAATGTCCATGTGTCAATAATGGTATTGTCAAGGTTGGTCTATTATTT
TGTTAATGAAAGTTATGTTTTGTAAAAAGGAAACCTTTTTTTACGCTGAA
TATCTTAAGAACAATAGTTATACTTGTGAATTTCGTAATTGATGAGAACA
GCCAGAATTGTGACAAAATTTACTTAATCTTCTCAGAAGAAATTGTTTTA
ACAACTTTTAATATGCTCTCAATGCTATGCTTTTCTTTACACAGGCGCCA
GGTGAAACATGGAAACCAAATGATCATGAATTCTGTCGTTGCAACGGTGA
TACCCAAGAATGTGTACCAACATGTCCAGAATCTTTGAAATGTAAACCAG
TAAGTAGAAACAAAAGAAAAATATGAGATTTGATTTGTGTATCTCCACTG
TAAAACACCGCGCTCAGGTGGTCGGTAATAGTAATTTTTATAACAGTTTT
CACAATGTATTTATTGAATGCCCCTACCCCTGATTGTTAATTTTTCGATT
TTTTCCAACCCCAGACTTTATTAGGACCCCCTGTTTATAAAGTTTAGGTA
TATTTAGCTGTCGAAATTCCAAACCCCAGTTTATTAGGCATCTGAGAGTA
CAAATGTCCTTGACCTGTCTAGGTTCTAATTTTCTTTTTTGTTGCGTCTT
TTAGTACGAGAAGAAGATCTTCACGGGTCCATCAGAAGATGGAGAGTGCT
GCAAATGTGTACCAAGTTGTCAGTGTAAGTAAATTCTTAACTAGTCTTCC
GCAGCCGAAAGCTTGATACTATACAAGGAACGGATTTTCTTTTTGCTTAG
TTTTTGAGAATTGTATTTAAATTTATCTGCGGTAACTGAATACACGTTTT
TTTATAAGAACATCCAAATTTTTTGAAGCCTTCGGATGTTCTTAACTTTT
TGAGCTTTAGGCCTAAAAATGTTCTCGATATGTTCTTATTTTGACCATTT
TGTGAATATTTTCATCGATTTTTTTTCCTAAGAAATAGGGTGTTTTTGAG
TCTACAAAGTCTCAAAATGTTCTTAACTTGTTCCTAACATTTTGGCCAGC
GAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAGCGTATATCGT
GTCGATTCTGCATCACTTAGTTCTATCTGCTCTCTTTTATTTTCAGATTG
TAAGATTGGCTCTCACAAATACGTTCCTGTAAGCCAATTTTCCACTTTCT
TCAATAATTACATTTTCAAAATATTCAATCGGAGAAATTAGTCATAACCA
GATCTTTTATATGTATTTGATTTTGGAACCTAAAACTTTCTTAAATGCCT
ATGTTATATAATCTGAAGATCGATTACCAAGGAAGTACCTAAAGCCACTA
GATTTTAACAGTTTCCTTCAATTAAAGCTTTCAAACTGTACACCAGTCGA
CGCAAAATTTCACGTAGATTTCAAAAATTCAATAAAAGTTTCTATATCAA
AAGTTATGGCCCTTTTTTGAAGCACTATAGGTTTTGTTGATCCCTCAGTC
ACGGGTATACTCGTAGCCGCCAGCGAATATGATAAACGTATGCCATCTTA
TTGTAGATTGGAGAGAAGTGGAGTATCAGCCGTGATGAGAATTCGTGTGT
CGAGGGACAATGTTTGTTGGATGAGGATGGTGAATGCGCCATTTTGGAAA
AAGATCAAATTATCTGTGAAAAACCATGTCCAAAGGTTTGATAGTTTATA
ACCACGTTGAACCACATTTTTTTATAGAAATTGTCACTTTAACGTATTGT
AATTGATGGAGATATCCTTCGAAAATTTTTCTAATCTTCAGAAATTTAGT
CTGAATCGCAGACCTCTACAAAACCGCAGGTAGTATAAGGAGCATAAATC
CGGTAGTGGATGCCAGCAGACTAATTCACGGTGATCTTTCTGTGGAACTT
TTAAAAAATCGGGATAATTTCGGCTAGTTTTCCCTGAATCCCCAAAATTA
GTGTCCATATGGAGATGAAGTTTTGCACACAAAGTTACCTCATAACAAGT
CAAAAGTAGAAGAAAGAAGTTTTTGATACATCCCCCAGATCATAGGTACC
AGGACACTTTTGTTTTCGAGAGATCCCTCTATCCCTTCCTCATCCCGGGT
GGCCTCTCTCTAAATCGAAATCAAGATAATTTCCGGATTGGAAAAAGCTA
GATAGAAACTTTAAATTTTGAGAAAATGTGTTCTATGCTTTTCAAAGGAT
AAAAGAAAAAGGGAGTAATTATTCTCAAAACCAAAAATTTTGAATCCTAT
TAATCTGGTTACAGATGGCCGTGCGTACAGAAAAGTTTGACCGATTCCTA
CGGTAAAGCTCTCTGACCCCAACTGTCACGATTTGCAATTCATCAGAAAG
GAAGTTTTATTTTTCCGACTTTCTTTTAGGATATGAAACGAAGCACAAAT
GGAACTTGTTGTGATTGTGGTAAGATTATTTACCTATACAAAAACATCTG
TTTGCGGTACACTCAATCATGAATTTATTATATACACTGGATAAACAACA
AGCTAAGTTTTCATTGAGTTCTTATGCTCTAGCTTAGTCTGAATTGCAGA
CCTCTACAAAACCCCAGGTAGTATAGGTCTGCTTAATGGTCTACCAACCG
CTTTCCGGTTTCAGGTTTTTTTAATTCGATGTATTTTACAGAATCTTGGC
GAGTTAATAAATGAGATTATTAATCATTTTTCAAAATCAGAGAATTCCAA
GCCGCCATGACAGTTGTCCTTTGCAGACATAGCTCGATCTACGGTTGTTT
CCTTAAACAATGGAAAGACAATACTTCGCTCTCCACCGTTTCATGCGTTG
TTCATCCAGTGTATATAATAAATTCATGATTCAATTCAAACTCGAACGTC
TAATTTGTTCTAATTATAGAGAGTATTTTTAGAGGGTTTCCTCATACTGG
GAACTGAGAATTGGTTCCAACTTAAGGGAAGAAATTTTCGCGGAATTTAA
TTTTGCGGTTGAGAGGAATTTTTGTTATATGGCTTTTTTTGCCCCCAAAC
CACCAATTCTATAGGTGATTTTTTAAATCATGACAATATTCTTGTTTCGC
GGAATTTAATTTCACGGATTTGTCAAAAAAAACCGAAATTAAATTCCGCG
AACCGAAAATTTCTCCCCTTAAGGTATAGAAAGATTCGAATAATGTAATT
TCGAAGTAGCGAGAGTCGATTGTATACTAATTTATTAATCAATACCGAAA
TCTATTTGTAGCAAGGTCTGTTAGCACATAAAAACGTACGAACACTTCAG
ATAGTGATAAAAGCACACAATTTGGCACAGATGACACTTTAGAGGGGGTT
TAAAACTTTTTTTCTCGTTCTAAAATATATCCCATATTGTACTCTTGTAC
CGTGTGATAGCTGTTACTAAATAACATAATCTGATAATATTCCATTCCTG
AATATCACTCTCACCGCTATTTGATTCGAGCTCTATCAAAAGTAACAGAC
TTTTTTGTGTCCGCTGCACACTATTTCGAGACAGCCTAAGTGATAATTTT
CACCATTCTCAAAAGAAATTGGCATAAAAATAAAATTCGATCAAGCTCAT
TTTTAGAGTTTCATTGATTGTTTTATCTCAGAACCAACAACGCAAGTGTC
GACAACTCCTTCGACAACAGAAGCTTCAACAACAATAGAATCCTCGACAA
CAAAATCACAATCAACAACAGAATCCTCAACAACTCAATCACAATCAACC
ACAGAGGCTGCAACAACTCCATCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001463XLOC_001463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002712-exon-sc0000021-1575043694:645811..645838TCONS_00002712-exon-sc0000021-1575043694:645811..645838Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:645608..645658TCONS_00002712-exon-sc0000021-1575043694:645608..645658Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:645136..645402TCONS_00002712-exon-sc0000021-1575043694:645136..645402Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:644154..644335TCONS_00002712-exon-sc0000021-1575043694:644154..644335Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:643840..643944TCONS_00002712-exon-sc0000021-1575043694:643840..643944Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:643465..643534TCONS_00002712-exon-sc0000021-1575043694:643465..643534Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:643011..643042TCONS_00002712-exon-sc0000021-1575043694:643011..643042Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:642504..642632TCONS_00002712-exon-sc0000021-1575043694:642504..642632Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:641770..641809TCONS_00002712-exon-sc0000021-1575043694:641770..641809Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1575043694:640462..640607TCONS_00002712-exon-sc0000021-1575043694:640462..640607Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:645811..645838TCONS_00002712-exon-sc0000021-1510915933:645811..645838Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:645608..645658TCONS_00002712-exon-sc0000021-1510915933:645608..645658Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:645136..645402TCONS_00002712-exon-sc0000021-1510915933:645136..645402Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:644154..644335TCONS_00002712-exon-sc0000021-1510915933:644154..644335Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:643840..643944TCONS_00002712-exon-sc0000021-1510915933:643840..643944Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:643465..643534TCONS_00002712-exon-sc0000021-1510915933:643465..643534Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:643011..643042TCONS_00002712-exon-sc0000021-1510915933:643011..643042Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:642504..642632TCONS_00002712-exon-sc0000021-1510915933:642504..642632Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:641770..641809TCONS_00002712-exon-sc0000021-1510915933:641770..641809Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1510915933:640462..640607TCONS_00002712-exon-sc0000021-1510915933:640462..640607Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:645811..645838TCONS_00002712-exon-sc0000021-1491911889:645811..645838Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:645608..645658TCONS_00002712-exon-sc0000021-1491911889:645608..645658Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:645136..645402TCONS_00002712-exon-sc0000021-1491911889:645136..645402Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:644154..644335TCONS_00002712-exon-sc0000021-1491911889:644154..644335Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:643840..643944TCONS_00002712-exon-sc0000021-1491911889:643840..643944Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:643465..643534TCONS_00002712-exon-sc0000021-1491911889:643465..643534Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:643011..643042TCONS_00002712-exon-sc0000021-1491911889:643011..643042Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:642504..642632TCONS_00002712-exon-sc0000021-1491911889:642504..642632Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:641770..641809TCONS_00002712-exon-sc0000021-1491911889:641770..641809Clytia hemisphaericaexon
TCONS_00002712-exon-sc0000021-1491911889:640462..640607TCONS_00002712-exon-sc0000021-1491911889:640462..640607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:640462..645838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.636829	0.574167	1.17471	0.512341	1.47731	1.0006	1.52401	2.25974	2.68199	2.96858	4.09041	2.61238	6.41022	11.0501	3.80655	2.01836	0.954955	1.42305	28.1755	34.1507	4.38933	4.1491	1.77461	4.62541	9.24725	8.16568	0.173533	0	0.10921	0.312547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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