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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002702 ID=TCONS_00002702|Name=TCONS_00002702|organism=Clytia hemisphaerica|type=transcript|length=1471bp
ATTTTAGACAACAATAAAAACTGACAGACAGCTAATCGTTCATAACTTAA
GAAAAAGAGATTCaatctctcaaaaaattaaccaatatggacgctgAAGA
GATGCCTTTTCCAAGGCTAAATGGTATCTCAGTGGTCACTGGCACCTGTT
TTGTAGTCGGTGAAGTCGTTGGTGCCGGTATCGTGGCCCTACCATACACA
ATGAAACTGGTCAGTTGGTGGgggattcctttgttttttcttgGTGCATT
TATAATGAGCCTGTGTGGTGTACTGTTATCACATTCTTATGTATTAGCGT
TCAGAGACGTTAAAAATAGAGAAGAGATACGTGACCCATACCCACAGATC
GCTGAGAAAGCATACGGCAAACCAGCAAAACATTGTATCATAATAATGTT
GAATTTATCCTTGTTATTCGTctgtgttgtttttttgttactCCTGGGTG
AAATATTCAGTGAATTTGCACCAATACATGGACTATCACATCGTAACCAA
ATGAGAATCTGGTTTGTAGTATCCAGTTTTGTTTTGATCCCGTTAACCAT
GTTTGGAACACCGAAAGACTTTTGGGGGATTGGTTTATTAGCATCTATAT
GCAGTGCAATTGCAGGTGTTATGATATGTTTAAATCTAGCCATTACCAGT
TCGCGATATGGATATACAGTACCACATCGATATCGAATCAATCCGGAAAC
AGCACTGGCTGTATTTGGAACAATATCTTTTACATTTGGTGGAAACGCCA
TATTCCCAACTATACAAAATGATCTAAGAGAACCACACAAGTTTCCTAGA
GCTGTTGTATTTGGATATTGTGTGGTCCTGGTTTTATACACTGGAGTCAG
TATTGGTGCATTTTTAGTTTTCGACACCAGGATTGAGGAAGATTTACTAA
CTTCATTCGCCAGATCTGAAATTCATGACAAATGTATATACTTTCGTGTG
TATACCATGTTGGCTCAAATATCTATTTGTGGGcacctgttagcagcttt
tgtAATAATCATCAATCCGGTGAACCAACAAGTTGAATATATACTCAAAT
CTCCTGTTGAATTTTGTTGGCAACGTGTTGTCCTACGAACAATTTGCGTA
ATGGTGATTCTTATAACAGCGGTGGCAATTCCCAACTTTGGACCAGTCCT
CAGTCTTCTTGGTGGCTCATTTTTCACGCTCCTAAGCGTTGTGTTCCCTA
TTATATTTTATAATAAACTCAAAGAAGGTCAGCTTGCACTGTGGAAGAAA
TTTGGACTATTGGCAATCATGTGCATTACTGTTTCTTCAGCTATTGGAAA
CTTTTATGTTGAaagtaaaaatatattcaaagtgATCAAAGGAAGTTATG
AAACGTAACGATTTGCATTCCTAAGTTActttataaatcaaaatctcgAT
ATTAGATTATCAATTAACAACGAAGTCGCAAAGGGGGTTGGGATCGAGTT
AAAAAGggtgcgagtgacgtc Run BLAST on NCBI protein sequence of TCONS_00002702-protein >TCONS_00002702-protein ID=TCONS_00002702-protein|Name=TCONS_00002702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MDAEEMPFPRLNGISVVTGTCFVVGEVVGAGIVALPYTMKLVSWWGIPLF
FLGAFIMSLCGVLLSHSYVLAFRDVKNREEIRDPYPQIAEKAYGKPAKHC
IIIMLNLSLLFVCVVFLLLLGEIFSEFAPIHGLSHRNQMRIWFVVSSFVL
IPLTMFGTPKDFWGIGLLASICSAIAGVMICLNLAITSSRYGYTVPHRYR
INPETALAVFGTISFTFGGNAIFPTIQNDLREPHKFPRAVVFGYCVVLVL
YTGVSIGAFLVFDTRIEEDLLTSFARSEIHDKCIYFRVYTMLAQISICGH
LLAAFVIIINPVNQQVEYILKSPVEFCWQRVVLRTICVMVILITAVAIPN
FGPVLSLLGGSFFTLLSVVFPIIFYNKLKEGQLALWKKFGLLAIMCITVS
SAIGNFYVESKNIFKVIKGSYET Run BLAST on NCBI transcript from alignment at sc0000021:609288..611561- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002702 ID=TCONS_00002702|Name=TCONS_00002702|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at sc0000021:609288..611561- (Clytia hemisphaerica)
ATTTTAGACAACAATAAAAACTGACAGACAGCTAATCGTTCATAACTTAA
GAAAAAGAGATTCAATCTCTCAAAAAATTAACCAATATGGACGCTGAAGA
GATGCCTTTTCCAAGGCTAAATGGTATCTCAGTGGTCACTGGCACCTGTT
TTGTAGTCGGTGAAGTCGTTGGTGCCGGTATCGTGGCCCTACCATACACA
ATGAAACTGGTCAGTTGGTGGGGGATTCCTTTGTTTTTTCTTGGTGCATT
TATAATGAGCCTGTGTGGTGTACTGTTATCACATTCTTATGTATTAGCGT
TCAGAGACGTTAAAAATAGAGAAGAGATACGTGACCCATACCCACAGATC
GCTGAGAAAGCATACGGCAAACCAGCAAAACATTGTATCATAATAATGTT
GAATTTATCCTTGTTATTCGTCTGTGTTGTTTTTTTGTTACTCCTGGGTG
AAATATTCAGTGAATTTGCACCAATACATGGACTATCACATCGTAACCAA
ATGAGAATCTGGTTTGTAGTATCCAGTTTTGTTTTGATCCCGTTAACCAT
GTTTGGAACACCGAAAGACTTTTGGGGGATTGGTTTATTAGCATCTATAT
GCAGTGCAATTGCAGGCGTTATGATATGTTTAAATCTAGCCATTACCAGT
TCGCGATATGGATATACAGTACCANTAGTGCAATCGCAGGTGTTATGATA
TGTTTAAATCTAGCCATTACCAGTTCGCGATATGGATATACAGTACCACA
TCGATATCGAATCAATCCGGAAACAGCACTGGCTGTATTTGGAACAATAT
CTTTTACATTTGGTGGAAACGCCATATTCCCAACTATACAAAATGATCTA
AGAGAACCACACAAGTTTCCTAGAGCTGTTGTATTTGGATATTGTGTGGT
CCTGGTTTTATACACTGGAGTCAGTATTGGTGCATTTTTAGTTTTCGACA
CCAGGATTGAGGAAGATTTACTAACTTCATTCGCCAGATCTGAAATTCAT
GACAAATGTATATACTTTCGTGTGTATACCATGTTGGCTCAAATATCTAT
TTGTGGGCACCTGTTAGCAGCTTTTGTAATAATCATCAATCCGGTGAACC
AACAAGTTGAATATATACTCAAATCTCCTGTTGGTAAGTAACTAACTAAT
CATATTCACCCCTTTCTCACAAACCCGGTGGGACCCCCTCCCACTGGAAA
AAATGGCCAAAATATCGTTATCAGTAGCAAATTTTACTCTAATTTTTGTC
CCTGCTGGGAATGGTAAACAAATGATTAAATCTTCATTGTTTCATCTTCA
ACATTGTGTTATTTTTCTATCCCCACTGAATTTCCTAACTTAAAAGTAAT
GGAATTTAAATTCCCGGCCATAAAATAACGTGGCAAAATCGATCCTCATC
GAGTTTCAGTTTGAAAAATTCTGCTCCAATTTTTGTCTGAAAAATCAAGT
GAAAAAATCCTCACTGCAAAATATTGTCTTACCCTCGGTTTTTATTCATT
TTTCTCAATAACCCAGTTATTGAATTCAGTATATCTAGTATCTCAGAAGG
AAATTCTTAAAGATTTTGGATCAAGTGCCGGTTAACGTGGTTAGTGCCAC
TTAAGTAAAATACTGAATAAATAACAATCTCACTTAAGCGGCACTTACCA
CGCTAATTCATGATATTTATGATGTAATGTTTTCTACGGGACCAACCCCG
GTTTTCACCAGTAGTGGCAAATTGAAACTATAGAAAAACTGTTCAAAATT
TGCCTCTATCAAAAACCGGGATGTTTCCGTTAAAAAATTACGACATGTTC
ATCAACTGATTTAATTTTTCTAGTATTCTTAACAACATGTTTTTCTTATG
TTCTGCTCATAGAATTTTGTTGGCAACGTGTTGTCCTACGAACAATTTGC
GTAATGGTGATTCTTATAACAGCGGTGGCAATTCCCAACTTTGGACCAGT
CCTCAGTCTTCTTGGTGGCTCATTTTTCACGCTCCTAAGCGTTGTGTTCC
CTATTATATTTTATAATAAACTCAAAGAAGGTCAGCTTGCACTGTGGAAG
AAATTTGGACTATTGGCAATCATGTGCATTACTGTTTCTTCAGCTATTGG
AAACTTTTATGTTGAAAGTAAAAATATATTCAAAGTGATCAAAGGAAGTT
ATGAAACGTAACGATTTGCATTCCTAAGTTACTTTATAAATCAAAATCTC
GATATTAGATTATCAATTAACAACGAAGTCGCAAAGGGGGTTGGGATCGA
GTTAAAAAGGGTGCGAGTGACGTC Coding sequence (CDS) from alignment at sc0000021:609288..611561- >TCONS_00002702 ID=TCONS_00002702|Name=TCONS_00002702|organism=Clytia hemisphaerica|type=CDS|length=3816bp|location=Sequence derived from alignment at sc0000021:609288..611561- (Clytia hemisphaerica)
AATTTTGTTGGCAACGTGTTGTCCTACGAACAATTTGCGTAATGGTGATT
CTTATAACAGCGGTGGCAATTCCCAACTTTGGACCAGTCCTCAGTCTTCT
TGGTGGCTCATTTTTCACGCTCCTAAGCGTTGTGTTCCCTATTATATTTT
ATAATAAACTCAAAGAAGGTCAGCTTGCACTGTGGAAGAAATTTGGACTA
TTGGCAATCATGTGCATTACTGTTTCTTCAGCTATTGGAAACTTTTATGT
TGAAAGTAAAAATATATTCAAAGTGATCAAAGGAAGTTATGAAACGTAAG
TGTTATGATATGTTTAAATCTAGCCATTACCAGTTCGCGATATGGATATA
CAGTACCACATCGATATCGAATCAATCCGGAAACAGCACTGGCTGTATTT
GGAACAATATCTTTTACATTTGGTGGAAACGCCATATTCCCAACTATACA
AAATGATCTAAGAGAACCACACAAGTTTCCTAGAGCTGTTGTATTTGGAT
ATTGTGTGGTCCTGGTTTTATACACTGGAGTCAGTATTGGTGCATTTTTA
GTTTTCGACACCAGGATTGAGGAAGATTTACTAACTTCATTCGCCAGATC
TGAAATTCATGACAAATGTATATACTTTCGTGTGTATACCATGTTGGCTC
AAATATCTATTTGTGGGCACCTGTTAGCAGCTTTTGTAATAATCATCAAT
CCGGTGAACCAACAAGTTGAATATATACTCAAATCTCCTGTTGATGGACG
CTGAAGAGATGCCTTTTCCAAGGCTAAATGGTATCTCAGTGGTCACTGGC
ACCTGTTTTGTAGTCGGTGAAGTCGTTGGTGCCGGTATCGTGGCCCTACC
ATACACAATGAAACTGGTCAGTTGGTGGGGGATTCCTTTGTTTTTTCTTG
GTGCATTTATAATGAGCCTGTGTGGTGTACTGTTATCACATTCTTATGTA
TTAGCGTTCAGAGACGTTAAAAATAGAGAAGAGATACGTGACCCATACCC
ACAGATCGCTGAGAAAGCATACGGCAAACCAGCAAAACATTGTATCATAA
TAATGTTGAATTTATCCTTGTTATTCGTCTGTGTTGTTTTTTTGTTACTC
CTGGGTGAAATATTCAGTGAATTTGCACCAATACATGGACTATCACATCG
TAACCAAATGAGAATCTGGTTTGTAGTATCCAGTTTTGTTTTGATCCCGT
TAACCATGTTTGGAACACCGAAAGACTTTTGGGGGATTGGTTTATTAGCA
TCTATATGCAGTGCAATTGCAGAATTTTGTTGGCAACGTGTTGTCCTACG
AACAATTTGCGTAATGGTGATTCTTATAACAGCGGTGGCAATTCCCAACT
TTGGACCAGTCCTCAGTCTTCTTGGTGGCTCATTTTTCACGCTCCTAAGC
GTTGTGTTCCCTATTATATTTTATAATAAACTCAAAGAAGGTCAGCTTGC
ACTGTGGAAGAAATTTGGACTATTGGCAATCATGTGCATTACTGTTTCTT
CAGCTATTGGAAACTTTTATGTTGAAAGTAAAAATATATTCAAAGTGATC
AAAGGAAGTTATGAAACGTAAGTGTTATGATATGTTTAAATCTAGCCATT
ACCAGTTCGCGATATGGATATACAGTACCACATCGATATCGAATCAATCC
GGAAACAGCACTGGCTGTATTTGGAACAATATCTTTTACATTTGGTGGAA
ACGCCATATTCCCAACTATACAAAATGATCTAAGAGAACCACACAAGTTT
CCTAGAGCTGTTGTATTTGGATATTGTGTGGTCCTGGTTTTATACACTGG
AGTCAGTATTGGTGCATTTTTAGTTTTCGACACCAGGATTGAGGAAGATT
TACTAACTTCATTCGCCAGATCTGAAATTCATGACAAATGTATATACTTT
CGTGTGTATACCATGTTGGCTCAAATATCTATTTGTGGGCACCTGTTAGC
AGCTTTTGTAATAATCATCAATCCGGTGAACCAACAAGTTGAATATATAC
TCAAATCTCCTGTTGATGGACGCTGAAGAGATGCCTTTTCCAAGGCTAAA
TGGTATCTCAGTGGTCACTGGCACCTGTTTTGTAGTCGGTGAAGTCGTTG
GTGCCGGTATCGTGGCCCTACCATACACAATGAAACTGGTCAGTTGGTGG
GGGATTCCTTTGTTTTTTCTTGGTGCATTTATAATGAGCCTGTGTGGTGT
ACTGTTATCACATTCTTATGTATTAGCGTTCAGAGACGTTAAAAATAGAG
AAGAGATACGTGACCCATACCCACAGATCGCTGAGAAAGCATACGGCAAA
CCAGCAAAACATTGTATCATAATAATGTTGAATTTATCCTTGTTATTCGT
CTGTGTTGTTTTTTTGTTACTCCTGGGTGAAATATTCAGTGAATTTGCAC
CAATACATGGACTATCACATCGTAACCAAATGAGAATCTGGTTTGTAGTA
TCCAGTTTTGTTTTGATCCCGTTAACCATGTTTGGAACACCGAAAGACTT
TTGGGGGATTGGTTTATTAGCATCTATATGCAGTGCAATTGCAGAATTTT
GTTGGCAACGTGTTGTCCTACGAACAATTTGCGTAATGGTGATTCTTATA
ACAGCGGTGGCAATTCCCAACTTTGGACCAGTCCTCAGTCTTCTTGGTGG
CTCATTTTTCACGCTCCTAAGCGTTGTGTTCCCTATTATATTTTATAATA
AACTCAAAGAAGGTCAGCTTGCACTGTGGAAGAAATTTGGACTATTGGCA
ATCATGTGCATTACTGTTTCTTCAGCTATTGGAAACTTTTATGTTGAAAG
TAAAAATATATTCAAAGTGATCAAAGGAAGTTATGAAACGTAAGTGTTAT
GATATGTTTAAATCTAGCCATTACCAGTTCGCGATATGGATATACAGTAC
CACATCGATATCGAATCAATCCGGAAACAGCACTGGCTGTATTTGGAACA
ATATCTTTTACATTTGGTGGAAACGCCATATTCCCAACTATACAAAATGA
TCTAAGAGAACCACACAAGTTTCCTAGAGCTGTTGTATTTGGATATTGTG
TGGTCCTGGTTTTATACACTGGAGTCAGTATTGGTGCATTTTTAGTTTTC
GACACCAGGATTGAGGAAGATTTACTAACTTCATTCGCCAGATCTGAAAT
TCATGACAAATGTATATACTTTCGTGTGTATACCATGTTGGCTCAAATAT
CTATTTGTGGGCACCTGTTAGCAGCTTTTGTAATAATCATCAATCCGGTG
AACCAACAAGTTGAATATATACTCAAATCTCCTGTTGATGGACGCTGAAG
AGATGCCTTTTCCAAGGCTAAATGGTATCTCAGTGGTCACTGGCACCTGT
TTTGTAGTCGGTGAAGTCGTTGGTGCCGGTATCGTGGCCCTACCATACAC
AATGAAACTGGTCAGTTGGTGGGGGATTCCTTTGTTTTTTCTTGGTGCAT
TTATAATGAGCCTGTGTGGTGTACTGTTATCACATTCTTATGTATTAGCG
TTCAGAGACGTTAAAAATAGAGAAGAGATACGTGACCCATACCCACAGAT
CGCTGAGAAAGCATACGGCAAACCAGCAAAACATTGTATCATAATAATGT
TGAATTTATCCTTGTTATTCGTCTGTGTTGTTTTTTTGTTACTCCTGGGT
GAAATATTCAGTGAATTTGCACCAATACATGGACTATCACATCGTAACCA
AATGAGAATCTGGTTTGTAGTATCCAGTTTTGTTTTGATCCCGTTAACCA
TGTTTGGAACACCGAAAGACTTTTGGGGGATTGGTTTATTAGCATCTATA
TGCAGTGCAATTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002702-exon-sc0000021-1575043694:610947..611561 | TCONS_00002702-exon-sc0000021-1575043694:610947..611561 | Clytia hemisphaerica | exon |
| TCONS_00002702-exon-sc0000021-1575043694:610429..610872 | TCONS_00002702-exon-sc0000021-1575043694:610429..610872 | Clytia hemisphaerica | exon |
| TCONS_00002702-exon-sc0000021-1575043694:609288..609699 | TCONS_00002702-exon-sc0000021-1575043694:609288..609699 | Clytia hemisphaerica | exon |
| TCONS_00002702-exon-sc0000021-1510915933:610947..611561 | TCONS_00002702-exon-sc0000021-1510915933:610947..611561 | Clytia hemisphaerica | exon |
| TCONS_00002702-exon-sc0000021-1510915933:610429..610872 | TCONS_00002702-exon-sc0000021-1510915933:610429..610872 | Clytia hemisphaerica | exon |
| TCONS_00002702-exon-sc0000021-1510915933:609288..609699 | TCONS_00002702-exon-sc0000021-1510915933:609288..609699 | Clytia hemisphaerica | exon |
| TCONS_00002702-exon-sc0000021-1491911889:610947..611561 | TCONS_00002702-exon-sc0000021-1491911889:610947..611561 | Clytia hemisphaerica | exon |
| TCONS_00002702-exon-sc0000021-1491911889:610429..610872 | TCONS_00002702-exon-sc0000021-1491911889:610429..610872 | Clytia hemisphaerica | exon |
| TCONS_00002702-exon-sc0000021-1491911889:609288..609699 | TCONS_00002702-exon-sc0000021-1491911889:609288..609699 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:609288..611561 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013057 | AA_transpt_TM |
Blast
The following BLAST results are available for this feature:
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