TCONS_00002690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002690
Unique NameTCONS_00002690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002690 ID=TCONS_00002690|Name=TCONS_00002690|organism=Clytia hemisphaerica|type=transcript|length=1454bp
TTCAACCAGCAGGACAACAAAATGGCGTCTACAAGTGATGAGATTATGGA
cgactttgttttgaattttgatacaGAGTTGCCAGAGGAGCTGTtatcaa
ttgaaaatttagaattAGATGATATGAATCtcgatgaagatgaagaaata
CAATTTGACATTGAACCAATCATAGTGGATGAGGACATTATCCAGGAGGC
AGATGAACTTGAGCTGGACATTGAGTCCGAATCCACCAATTCAGAAATCT
CAATCATTTTTACAAGTGACACTGATGTAGCCATTGTAAAATCATATGAT
GAACTGGTTGAAGATAAGAAAGAGACCAAGGATAAACCTATTTTGCACTG
CAAACATTGCAACAAGCAGTATGTCATCCCTAAATACTTGAAAGATCACG
AAGAATCATGTGtatCCAAATCAAGCAAGAACCTCACAGAATGGAGGAGA
AATATACAACAACaaacattcaaatttttggagAATGCTGTTGAAGATGC
TTCAAAAGACAGAATATTCAACCTGAAAAAGGAATCAATTATCCATCAGC
TCATCAAATATTTGAAATCCAAATTGGAAGAAAAGGACAACACGACAACA
ATCAATTCTTTCAAACAATTTACTGTATGTATGCTTCAGTGCATACCGGA
TCACCCTTCTAAAATCGAAAGTTGTACATTCAAATTAGAGGAAGTTTTCA
GCAACAAAACCATATGGACACTATGGAGAACATTATTCAAGGACTTTCCA
GAGACGAAAGAGCTTAGAATTTTACTCCATTACATACTTCAAAAACTCCA
TAAAGAGATATGGAATTATCGAAATAATCTTGAGGAAAACAGGcctgaaa
caaaaaaacttgagtTAAAACTGACACTTcaggaagaaaatattttacgg
TATGTCGCAGGTTACATTCCATACGTACTCCTGAAAAAGCTTGAAGACAG
GAAAGAATCAGACTCAAAAACGGCTTTGTTGTTAGTGCTCCATAGCTGGA
GCCAAGAACAAGGTGGCAAGGTCATCCCTTTTCTAGAATACACTCGTGCA
TGGACTGAAAGAATTAACAGAGGAGGAGCATATGtcatcaatgatgaatt
ttacatttttatacgCCGTTTGGAGAATGTTATTCGGACAGTTCTCAAAC
AGAAATTTGATGGTGCACTATGCTGGGGAGGATTTGAGACCTTTGATTTA
TGAGAAAATGGACAAGAGTAGTCTTGTGAGAATGTCATGGGACTCCCTGA
CGAAAGATTTAAATGATTCTCTCTCCAACTATTTAAGGAAGGCTGTCTTC
AAAATATGGACCAATGTTCGTGCTAACGCATTCATCAAGGCTTGGGTTAC
TATTATTAAACTTAAAAAGAACAGTAAAACAAATATTGACGATAAGGGAA
AACCAGCACAGAGAAAACAGCTTTCAGGATAGAATTGGGTTGATAGTTTG
TCAN
Run BLAST on NCBI

protein sequence of TCONS_00002690-protein

>TCONS_00002690-protein ID=TCONS_00002690-protein|Name=TCONS_00002690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
FNQQDNKMASTSDEIMDDFVLNFDTELPEELLSIENLELDDMNLDEDEEI
QFDIEPIIVDEDIIQEADELELDIESESTNSEISIIFTSDTDVAIVKSYD
ELVEDKKETKDKPILHCKHCNKQYVIPKYLKDHEESCVSKSSKNLTEWRR
NIQQQTFKFLENAVEDASKDRIFNLKKESIIHQLIKYLKSKLEEKDNTTT
INSFKQFTVCMLQCIPDHPSKIESCTFKLEEVFSNKTIWTLWRTLFKDFP
ETKELRILLHYILQKLHKEIWNYRNNLEENRPETKKLELKLTLQEENILR
YVAGYIPYVLLKKLEDRKESDSKTALLLVLHSWSQEQGGKVIPFLEYTRA
WTERINRGGAYVINDEFYIFIRRLENVIRTVLKQKFDGALCWGGFETFDL
Run BLAST on NCBI

transcript from alignment at sc0000021:453080..455129-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002690 ID=TCONS_00002690|Name=TCONS_00002690|organism=Clytia hemisphaerica|type=transcript|length=2050bp|location=Sequence derived from alignment at sc0000021:453080..455129- (Clytia hemisphaerica)
TTCAACCAGCAGGACAACAAAATGGCGTCTACAAGTGATGAGATTATGGA
CGACTTTGTTTTGAATTTTGATACAGAGTTGCCAGAGGAGCTGTTATCAA
TTGAAAATTTAGAATTAGATGATATGAATCTCGATGAAGATGAAGAAATA
CAATTTGACATTGAACCAATCATAGTGGATGAGGACATTATCCAGGAGGC
AGATGAACTTGAGCTGGACATTGAGTCCGAATCCACCAATTCAGAAATCT
CAATCATTTTTACAAGTGACACTGATGTAGCCATTGTAAAATCATATGAT
GAACTGGTTGAAGATAAGAAAGAGACCAAGGATAAACCTATTTTGCACTG
CAAACATTGCAACAAGCAGTATGTCATCCCTAAATACTTGAAAGATCACG
AAGAATCATGTGGTGAGTTTTACTTGATAATTATATATGTATATGTATAT
GTCTCAGTTTTTCTGTTCTGCTTTAATTCAATTGCCTGCTCATGCAGTTA
TGATATGATCGCTTAGTCTGAAGACCGTAGTCTTTGTAATGCAACGTCCC
CTAGCATCTCGAGAAAAAAAAGAGGATTTTCCTTACCTACTACTACTACT
ATACTGTGGCTATGTAGCCAAAACTTTGTTTACATTCTTCAATCAAAACT
ACTCAATAAACTGTACCAGTTTGTTGGATGATACCGTCAACAGCTCTAAC
TTGGGACAGTCTGACAAAACATGGGACAGCAATTTGGCCATCATTTTACT
GAACCTCCAAAGTCATCAAATTAACATAGTCGCAAAATCATAGAAAACAA
ACTTGTTGTCAACAGAGATTTAACAGTAAGTGAAAATATAGACCAGAAAG
TCAACCATACCATGATATGACCACCCATCCCAAGTTAGAGCTGTTGACGG
TATTACACAAAATCCTTCCTTTCTTTGTTATTTTTTGGATCAAAATATGA
TATATTATGTCCCCATATGATGGCATGTTGAATAATCATGATTTTATTTT
TATTTCAGTATCCAAATCAAGCAAGAACCTCACAGAATGGAGGAGAAATA
TACAACAACAAACATTCAAATTTTTGGAGAATGCTGTTGAAGATGCTTCA
AAAGACAGAATATTCAACCTGAAAAAGGAATCAATTATCCATCAGCTCAT
CAAATATTTGAAATCCAAATTGGAAGAAAAGGACAACACGACAACAATCA
ATTCTTTCAAACAATTTACTGTATGTATGCTTCAGTGCATACCGGATCAC
CCTTCTAAAATCGAAAGTTGTACATTCAAATTAGAGGAAGTTTTCAGCAA
CAAAACCATATGGACACTATGGAGAACATTATTCAAGGACTTTCCAGAGA
CGAAAGAGCTTAGAATTTTACTCCATTACATACTTCAAAAACTCCATAAA
GAGATATGGAATTATCGAAATAATCTTGAGGAAAACAGGCCTGAAACAAA
AAAACTTGAGTTAAAACTGACACTTCAGGAAGAAAATATTTTACGGTATG
TCGCAGGTTACATTCCATACGTACTCCTGAAAAAGCTTGAAGACAGGAAA
GAATCAGACTCAAAAACGGCTTTGTTGTTAGTGCTCCATAGCTGGAGCCA
AGAACAAGGTGGCAAGGTCATCCCTTTTCTAGAATACACTCGTGCATGGA
CTGAAAGAATTAACAGAGGAGGAGCATATGTCATCAATGATGAATTTTAC
ATTTTTATACGCCGTTTGGAGAATGTTATTCGGACAGTTCTCAAACAGAA
ATTTGATGGTGCACTATGCTGGGGAGGATTTGAGACCTTTGATTTATGAG
AAAATGGACAAGAGTAGTCTTGTGAGAATGTCATGGGACTCCCTGACGAA
AGATTTAAATGATTCTCTCTCCAACTATTTAAGGAAGGCTGTCTTCAAAA
TATGGACCAATGTTCGTGCTAACGCATTCATCAAGGCTTGGGTTACTATT
ATTAAACTTAAAAAGAACAGTAAAACAAATATTGACGATAAGGGAAAACC
AGCACAGAGAAAACAGCTTTCAGGATAGAATTGGGTTGATAGTTTGTCAN

Coding sequence (CDS) from alignment at sc0000021:453080..455129-

>TCONS_00002690 ID=TCONS_00002690|Name=TCONS_00002690|organism=Clytia hemisphaerica|type=CDS|length=2406bp|location=Sequence derived from alignment at sc0000021:453080..455129- (Clytia hemisphaerica)
TATCCAAATCAAGCAAGAACCTCACAGAATGGAGGAGAAATATACAACAA
CAAACATTCAAATTTTTGGAGAATGCTGTTGAAGATGCTTCAAAAGACAG
AATATTCAACCTGAAAAAGGAATCAATTATCCATCAGCTCATCAAATATT
TGAAATCCAAATTGGAAGAAAAGGACAACACGACAACAATCAATTCTTTC
AAACAATTTACTGTATGTATGCTTCAGTGCATACCGGATCACCCTTCTAA
AATCGAAAGTTGTACATTCAAATTAGAGGAAGTTTTCAGCAACAAAACCA
TATGGACACTATGGAGAACATTATTCAAGGACTTTCCAGAGACGAAAGAG
CTTAGAATTTTACTCCATTACATACTTCAAAAACTCCATAAAGAGATATG
GAATTATCGAAATAATCTTGAGGAAAACAGGCCTGAAACAAAAAAACTTG
AGTTAAAACTGACACTTCAGGAAGAAAATATTTTACGGTATGTCGCAGGT
TACATTCCATACGTACTCCTGAAAAAGCTTGAAGACAGGAAAGAATCAGA
CTCAAAAACGGCTTTGTTGTTAGTGCTCCATAGCTGGAGCCAAGAACAAG
GTGGCAAGGTCATCCCTTTTCTAGAATACACTCGTGCATGGACTGAAAGA
ATTAACAGAGGAGGAGCATATGTCATCAATGATGAATTTTACATTTTTAT
ACGCCGTTTGGAGAATGTTATTCGGACAGTTCTCAAACAGAAATTTGATG
GTGCACTATGCTGGGGAGGATTTGAGACCTTTGATTTATGATTCAACCAG
CAGGACAACAAAATGGCGTCTACAAGTGATGAGATTATGGACGACTTTGT
TTTGAATTTTGATACAGAGTTGCCAGAGGAGCTGTTATCAATTGAAAATT
TAGAATTAGATGATATGAATCTCGATGAAGATGAAGAAATACAATTTGAC
ATTGAACCAATCATAGTGGATGAGGACATTATCCAGGAGGCAGATGAACT
TGAGCTGGACATTGAGTCCGAATCCACCAATTCAGAAATCTCAATCATTT
TTACAAGTGACACTGATGTAGCCATTGTAAAATCATATGATGAACTGGTT
GAAGATAAGAAAGAGACCAAGGATAAACCTATTTTGCACTGCAAACATTG
CAACAAGCAGTATGTCATCCCTAAATACTTGAAAGATCACGAAGAATCAT
GTGTATCCAAATCAAGCAAGAACCTCACAGAATGGAGGAGAAATATACAA
CAACAAACATTCAAATTTTTGGAGAATGCTGTTGAAGATGCTTCAAAAGA
CAGAATATTCAACCTGAAAAAGGAATCAATTATCCATCAGCTCATCAAAT
ATTTGAAATCCAAATTGGAAGAAAAGGACAACACGACAACAATCAATTCT
TTCAAACAATTTACTGTATGTATGCTTCAGTGCATACCGGATCACCCTTC
TAAAATCGAAAGTTGTACATTCAAATTAGAGGAAGTTTTCAGCAACAAAA
CCATATGGACACTATGGAGAACATTATTCAAGGACTTTCCAGAGACGAAA
GAGCTTAGAATTTTACTCCATTACATACTTCAAAAACTCCATAAAGAGAT
ATGGAATTATCGAAATAATCTTGAGGAAAACAGGCCTGAAACAAAAAAAC
TTGAGTTAAAACTGACACTTCAGGAAGAAAATATTTTACGGTATGTCGCA
GGTTACATTCCATACGTACTCCTGAAAAAGCTTGAAGACAGGAAAGAATC
AGACTCAAAAACGGCTTTGTTGTTAGTGCTCCATAGCTGGAGCCAAGAAC
AAGGTGGCAAGGTCATCCCTTTTCTAGAATACACTCGTGCATGGACTGAA
AGAATTAACAGAGGAGGAGCATATGTCATCAATGATGAATTTTACATTTT
TATACGCCGTTTGGAGAATGTTATTCGGACAGTTCTCAAACAGAAATTTG
ATGGTGCACTATGCTGGGGAGGATTTGAGACCTTTGATTTATGATTCAAC
CAGCAGGACAACAAAATGGCGTCTACAAGTGATGAGATTATGGACGACTT
TGTTTTGAATTTTGATACAGAGTTGCCAGAGGAGCTGTTATCAATTGAAA
ATTTAGAATTAGATGATATGAATCTCGATGAAGATGAAGAAATACAATTT
GACATTGAACCAATCATAGTGGATGAGGACATTATCCAGGAGGCAGATGA
ACTTGAGCTGGACATTGAGTCCGAATCCACCAATTCAGAAATCTCAATCA
TTTTTACAAGTGACACTGATGTAGCCATTGTAAAATCATATGATGAACTG
GTTGAAGATAAGAAAGAGACCAAGGATAAACCTATTTTGCACTGCAAACA
TTGCAACAAGCAGTATGTCATCCCTAAATACTTGAAAGATCACGAAGAAT
CATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001451XLOC_001451Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002690-proteinTCONS_00002690-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002690-exon-sc0000021-1575043694:454718..455129TCONS_00002690-exon-sc0000021-1575043694:454718..455129Clytia hemisphaericaexon
TCONS_00002690-exon-sc0000021-1575043694:453080..454121TCONS_00002690-exon-sc0000021-1575043694:453080..454121Clytia hemisphaericaexon
TCONS_00002690-exon-sc0000021-1510915933:454718..455129TCONS_00002690-exon-sc0000021-1510915933:454718..455129Clytia hemisphaericaexon
TCONS_00002690-exon-sc0000021-1510915933:453080..454121TCONS_00002690-exon-sc0000021-1510915933:453080..454121Clytia hemisphaericaexon
TCONS_00002690-exon-sc0000021-1491911889:454718..455129TCONS_00002690-exon-sc0000021-1491911889:454718..455129Clytia hemisphaericaexon
TCONS_00002690-exon-sc0000021-1491911889:453080..454121TCONS_00002690-exon-sc0000021-1491911889:453080..454121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:453080..455129 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.626916	0.416824	0.258119	0.0946983	4.9573	4.22099	1.90509	2.20379	0.888488	1.24926	1.53013	0.759132	0.777028	0.413317	0.258897	0.573037	0.449231	0.306965	0.302921	0.475477	0.303069	0.282214	0.261385	0.415865	0.703687	0.791856	0.351665	0.0834015	0.189771	0.0644489
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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