TCONS_00002661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002661
Unique NameTCONS_00002661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002661 ID=TCONS_00002661|Name=TCONS_00002661|organism=Clytia hemisphaerica|type=transcript|length=2568bp
CGCAGTGACTTGACATTTTTGGTTGCACCTGCTTTACAGCCCTCGTGGCG
TTTGTTCCTAGAACGAAAAATTTCCGCGTGTAACATCCGCACCAAATTTG
TTTACATCGTGCATTCGAAAAGTCAAGATGGCGGCTAAAATCAAGGCAAT
CGTTTCTCTTTTTATGGTAATATTCTTCACAAATACTCACTCTGAAGATG
TATCTTTTGCTTTTGGTAAGAACACTTTACATGTGACTTCTCAGACTCAC
AATATAACtgaaaatacaagatatattatGCACGATGTCAACCCTGGGGA
GGGATTTAACCTAAGACGTGATGTTTACATTCGAATTGCAAATCTTGTAA
AAAGActcaatgaagaagaaaatcaacacTGGATTCTTGTTCTTGCTCCT
TGGAAGCATCTGTACCATTGGCAGAACAGATATTTGGATCAAAACGGTGA
ACCATGGTCAAACTTTTTTGACGTAGCAAGCCTGAATCGCTATGTTCCAG
TTATGGAATTTGACGATTTTTTACAAATAACTGGATCAAGTTCAATAGAT
CTTGTCATGTATCTTCAACGTCATCCAGATGGCTTTTCAGGAGGTTGGAA
AGAAATGTGTGAAGTTGGAAAGTGTGGTGATAGAATTCCTTTTTCAAAGC
AAGGGAACAAGTGGAGATCCAATTTTTGGGGGCATCATGAAGTTGTTGCG
CAAGATTTAGATTGCTATGATGTGCAAGGACACGCAACCATCCTCATTGA
CACCTTAAAGAAAGTTAAAGCAAGATCAATTCTGGTTGACAGATTTGAAC
AAGTTCTTCATACTGACTATGGCAGTGTTGAATTTTACAAGGCACGAAGA
AGTCTGGTTTTTGCTCAACATTTGCGTGAAGTTGCCGACAAATTTCGTGA
GAAGAAATTAAAATCAACTGATGATAAAGATAAAACACCTTACGCAGATG
ACTGGAGAAAGCAAATGCCTGAAGACGGATCGGCCCTCGGCGGACCCTAT
TTATCACTCCACATGAGGCGTGGTGATTTCACGTATGCTCATCAAGAGAC
TGTTCCTTCCATTGAGGAGATTGGTACCGAGGTTACGAAACAGTTGAAAA
AATACAAACTGAAGAAGGTGTACTTGGCTACCGACGGTACTGATGAAGAG
GTGAAAGAATTACAATCTCACTTTGAAGCAAAGATTTACCGTATATCACG
CACAAAGAAAGATGTAGAAATGTATCGAGACGGGGGTATTGCTATCATGG
ACCAATGGATTGCTGCTCATGGCAGGTATTTCATTGGCACATGTTCATCT
ACATTTTCATTTCGTATTTATGAAGAACGAGATATCTTAGGATTTGACCC
TAAAACAACGTACAATTGTATTTGTGGTCAACAAGCACCAAAAGACCGTT
GTGAACAGCCTGGTGGATGGAGAGTCAAATTCGGTTAAATCTGAATAATT
GATTATCAATTTttgttccttaacacttttttcAGACAATATTCAGGTTC
TATTgaattatttacattttttggaacttttggaaaaattagtTCACAAT
ATTTACAAAGGCTTTAAANGATTTGACCCTAAAACAACGTACAATTGTAT
TTGTGGTCAACAAGCACCAAAAGACCGTTGTGAACAGCCTGGTGGATGGA
GAGTCAAATTCGGTTAAATCTGAATAATTGATTATCAATTTttgttcctt
aacacttttttcAGACAATATTCAGGTTCTattgaattattttcattttt
tggaacttttggaaaaattagtTCACAATATTTACAAAGGctttaaAATC
TtcaatattttccaaatttcaatgTACTTTCAAGTCAGGTATTCAAAGTA
GTTATAATTGAATTTTCATTGAATTGTTCATTTCAGTATTTTGTCATTGA
TATTCATCGTCGTTATTTTCCTTACTTAACTtgatgggataaacttttgc
agGGATCAAATTTCCTGGTTGACCTTATCTTCGAAATGTTAAGATTCCGT
GGGGActtaattttttataaacatttcgcggataaggcctttccaaattt
ccattgagacTTAATTTCACGGATGACATCCAAATTCGTGAAATGTTATC
CAATTAAAGTAGCTTTCCATAACTTGTCGTGAAGAATTTGTTAACATTCA
ATAGCAGATGTTTGTTATAGAAAAATTCCAtgttaaatttttacattcgG
TGAgaaattttacaagattttttaagTAAATTCCATTCGTGAGATACCTC
GTATAAAGAAATACAGTAGCAAGGGATgttacctttttttattttgagaa
ataaGATACATGATAgcgttttaaaattttattcagTAATAGAATGGTGC
TTGGATAATGACTTTTATATAGAAATAATTTTATACTTCAACTTAACTTT
AATTAGCGtatacaaaattttgatagttACAATTTTCGTTAGTCCTCACT
AGGAATATTTTAGTAGCAATTTTTGACATAGGgtgaattttcttatttat
ttttttgtatcttaTTTATTAGCACAATAATaaatttcaaagatacaaat
ATAGTattctaaaataac
Run BLAST on NCBI

transcript from alignment at sc0000021:151363..162262-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002661 ID=TCONS_00002661|Name=TCONS_00002661|organism=Clytia hemisphaerica|type=transcript|length=10900bp|location=Sequence derived from alignment at sc0000021:151363..162262- (Clytia hemisphaerica)
CGCAGTGACTTGACATTTTTGGTTGCACCTGCTTTACAGCCCTCGTGGCG
TTTGTTCCTAGAACGAAAAATTTCCGCGTGTAACATCCGCACCAAATTTG
TTTACATCGTGCATTCGAAAAGTCAAGATGGCGGCTAAAATCAAGGCAAT
CGTTTCTCTTTTTATGGTAATATTCTTCACAAATACTCACTCTGAAGATG
TATCTTTTGCTTTTGGTAAGAACACTTTACATGTGACTTCTCAGACTCAC
AATATAACTGAAAATACAAGATATATTATGCACGATGTCAACCCTGGGGA
GGGATTTAACCTAAGACGTGATGTTTACATTCGAATTGCAAATCTTGTAA
AAAGACTCAATGAAGAAGAAAATCAACACTGGATTCTTGTTCTTGCTCCT
TGGAAGCATCTGTACCATTGGCAGAACAGATATTTGGATCAAAACGGTGA
ACCATGGTCAAACTTTTTTGACGTAGCAAGCCTGAATCGCTATGTTCCAG
TTATGGAATTTGACGATTTTTTACAAATAACTGGATCAAGTTCAATAGAT
CTTGTCATGTATCTTCAACGTCATCCAGATGGCTTTTCAGGAGGTTGGAA
AGAAATGTGTGAAGTTGGAAAGTGTGGTGATAGAATTCCTTTTTCAAAGC
AAGGGAACAAGTGGAGATCCAATTTTTGGGGGCATCATGAAGTTGTTGCG
CAAGATTTAGATTGCTATGATGTGCAAGGACACGCAACCATCCTCATTGA
CACCTTAAAGAAAGTTAAAGCAAGGTAACTTCAAAAATAATATTGCCTTC
CTTTGGCAGTTACATCAAAATGCCTCGAAAATGTCAATATGAAAATTGCG
TAATCAGAGAACGTATGTCTCGCTCATTATAAAAAGGCCGAGACAAACTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCTCACACTTATGTCTTT
TTTTTTCGCGTCCTTTTCCGTGATTACTTTTATTTATATTTTTAAAGACA
GGTAAGAAGGCATATTGATGTAACTGTTTGGTAGGAAAAAACAACTTTTC
CTTGGCAAAATGCAGGAGACAAAAATTATTTATGTTGGAGAATTTTTTAC
TCTGGAATTTTTTTTCAGTACCATGAGAGGTCCTAAATCCGACACCACTG
CCTAAATCCGATGGGGTCTTTCAAAGATACAAACTAAAATAAAAACAAAC
CTTTCGCTGTGACGCAACGATGATACCAAAGTGTCAACTAAACTGAGAGA
TTTGATACACTGAACCAATTGAACCAAATAACAATAATTGCTTCTTATAA
CAAAATATTTTTTTTTGTTGCGCAATATGCACAACGTCATAAATGACAAC
AGTAGTAACAACATCATAAAAAGTACCGTGAGTGGTCCTAAATCCGACAG
CCCTGCCTAAATCTGATGGGGTCTTTCAAAGATACAAACTAAAATAAAAA
CAAGCATTTCGCTGTGACGCAATGAAGATACCAAAGTGTCAACTAAACTG
AGACATTTGATGCACTTAACCAATTGAACCAAAATATTAATTGCTTCTTA
TACAAAACATAATTTTTTTATTACTAAATTGTTAACGTTTTAAACACGAG
CAACAAATTCAGAAAAATAGATTAATTGACATCTTGACATTTTAGTCATC
TTGTTAGATGTTTTGTTTCGAGAATTCTTGCAATATAGTTTATTGCTTAA
CTTGGAGAGGGATTGTTTGTAAACATAGAATTTTTTTTCATAGCAGTTAT
TTGGGGGGTCGGATTTAGACAGGGCTGTCGGATTTAGGACCACTCACGGT
AATGAGATGTTTTGATTTTCCAAAGCTCACGAAAATATAAAAGAGGTCTG
TGTACAAGCGTGCTCATTTTGAAACGTTACGTAATCAAGCCTGGTTTTTA
TTACTTTAGACTGGCACTAGGCTTGATTGCGGGCCTTCCGTAAATGAACA
TCCGGACTTATGGGTGGTAAAGAGGGCGTTGATAAATGCCGCCTCATTGA
TTCGATGTTTGTTATTCAAATCAACTGCTACCGCATCCGCCCTTTTTTCA
ACTCTGCGCCATTTTTACAATTTAGTCTGTTTGTTTCTTGATGGAAACCA
GTCCAAGTTGTTTCGTATTTTTCCCGCACAAGTCACTTTTATTACAAAAC
TGTTATCGTTTTAAACATGAGCAACTGATCCAGAATTAAAGGTAATTATT
TTTACAACTCACACTTTTTAATTACATTAATTGACATTACAGCTATCTTG
TTAGATGTTTTGTTTCGAGAGTTCTAGCAATAGTTTATCGTTCAACTTGG
AGAGGGAATGTTTGTAAACATAGAATTTTTTTTCATAACAGTTATTTGGG
GGGTCGGAATTAGGCAGTGGTGTCGGATTTAGGACCTCTCACGGTATCAG
GTGTCAAGATCAGGAAAAACTTAACAATTTTGAAAAATAATTAGGAAAAG
GCAGCAGAAGTCTAAACTTTATATTATAGGATTAGAAACGCGGCTAGACT
TACCGTCAACTGCTCTAACTTGGGACTATCTGACAAAACATGGGACAGCA
ACTTAGCCACCATTTCACCGAACCTCCAAAGTCATTTGATTTTAGTTAAT
GAATGGCTTATTAAAAATTACACAATTTCTCTTTCGCACTGAGTAGGCTT
TTAAATCAAAATATGAAAAAAATCCGTAGTGGAACACACGCAAGTGTGTC
AAAACAAATTTGTTGTCAAAGAGATTTAACAGTAAGTGAAAATACAGGCA
ATATATCAACGGTTCCATGTTTCGACCAATCGTCCCAAGTTAGAGCAGTT
GACGGTATATACATCTTTTCTTTCCCTTTTTCAACGATTGCAATGCTGAC
ACAACACGTTGACGTCAAAAGTATACCCCCCCATGAGAAGTACCTTAAGG
GAAGAAGTTTTGGCGAATTGCATAAAAAATTCGCCAAAATTTCTTTCCAC
CAAATTTAAATTTATAGGTCATTTGCCAAAAAAAAATTCTTGCCAAATTT
AATTTTTTTTCAATTTAGTCTCCATTTCTCCTAAAAGCCCCTTTTTTTCC
TCTTTGTTCAGCTAAAATATTGAACAAAAATAGGTCGTTCCCCAAAATTA
ATTCTGGCCAAATTGACAAATTTTATTAGATAAATTGCCAAAATAAATTC
CACCAAATTGCATCAAAATTGACGAAAAAATTTCTTTACTTAAGGTATAT
TGAAATCTGCTACAAAAACAAAAATAAAAATATTGTGTATAGCTAAAAAA
CGTTACAAACCTATGTTTACATCTTGTTAGAGTAAACAGCAGAAACATCA
AAATGATAAATGATAATATTAAAGTTTTACAGGTTTTCTTTTTCCTGTTT
TTATTTGGTTAAAAGGGGTGGAGGCAAACTCTTTTTGATGCAGTTTGATG
AAGTGTTATTTTTTGTATGATTAAGTCAAAACAAAAGATCTTTTTTGATG
TGCACAATGCACAATTTGAAGAGTAATTGAACAATTGGTTCCATTGTGGA
CACCTTGGATTGAGATCATCTTGTCAATTATGATTATGATTTATAGTCAC
AAATAACAAATATAGCCACAAATAACAATTAGCTTGGAAATTATGAAGCG
CTTTCATTTCACAACTTAGAGATAACAACTTACAATTTAAATCTCCAAAT
GGGGGAAATTTTCAGAACACGACACTGACCTTTGTATTAGCCCGAGTAAA
ATTTGTGATTGTTTGGTGTACAATGTGTTAGGAAGAATTTTTTTTGCTTT
GCTCACCTGAAGATTCCAATTAAGACTTGCAACCCTATCAAAAGGTGATT
GGTGCATGATATGTCTAGGTTTTATGTCAAAATTCAAAATGTTTATTCAT
AATCAGTCAGTAGAAAAAACTGAAAATTAAGACTACCATTCAGCACACTT
GGACCAGCAAATAGACTCCAGTCTTTTTTCCACCGTGATTCCTTACAAAA
AATAAAAAGGTTTTTTAGTCTATTTTGTAAAATGTTTTACAAATACTAAT
GTAGTCCTACTAATTATTTAAGTTTGAAATGAAAATTATGGTTAGACATA
AAGTAAAGTCATTAGAATGAAGAATCAAATCATACTACCTTCTGTTCCCT
TAACTAAGGCACTGCGTATGGAGTACGAGGTTTTCTGATGTATAGAATCA
AAATATTATCCGCTTAGCTACTTCATCATTTTATGATTTGTTTTAGATCA
ATTCTGGTTGACAGATTTGAACAAGTTCTTCATACTGACTATGGCAGTGT
TGAATTTTACAAGGTATACCATTTTAAATCATTGTCGTTTGTTAATTAAG
AGGTTTATTTCTTTTTCTCTAATAAAGTGTTTTCTTTTTGGCTATGTGTG
TGTATTAAAGAACTTTTTAGTTTGATAAAACATAGAATGCACCTCCCCCT
TAGCTTAGGGCTGGGTGTTGTGTAATAGAACTGGGGGCAGAGTTGATAGG
TTGAAGATATTTTAAATTATGTTAAAAATCTATGCTGTGGGGAAGGTTTT
ATCTCTCTCGAAAAAAATTTTTACCTGCGGTGGTGGGGGCTATGTTTCTA
GAATTTAGCTGGGGGCTATTTTCCTTAGCCCCCTGAAAAATACTTGGGGC
TGGACCCCTCTGCACACTATGAAACAATTCCCTGAACAGCAAAATATATA
ATTACCGCAAAAGATTCGATAATTCAGCATTTAGGGATTATGATGCTACA
AAGTTCTGAAAACTCAAAGTAATGAAATTGAATTGAATTATAATTAACAG
GCACGAAGAAGTCTGGTTTTTGCTCAACATTTGCGTGAAGTTGCCGACAA
ATTTCGTGAGAAGAAATTAAAATCAACTGATGATAAAGATAAAACACCTT
ACGCAGATGACTGGAGAAAGCAAATGCCTGAAGACGGATCGGCCCTCGGC
GGACCCTATTTATCACTCCACATGAGGCGTGGTGATTTCACGTATGCTCA
TCAAGAGACTGTTCCTTCCATTGAGGAGATTGGTACCGAGGTTACGAAAC
AGTTGAAAAAATACAAACTGAAGAAGGTGTACTTGGCTACCGACGGTACT
GATGAAGGTAAAAGTATTTCACACGTAAAGAATGTATCTAAAGTCTGTCC
AGATATAATTGGCAGTGGAAACAAGAATGCCTGTAACTTTTGATAGTCAA
ATATAACTATGCAAATTCTTTTTGCTTGTTTTAGAGAATCAAAAGCGCTA
TATTTGAATGTATTTTTGGTTGAAAAATTCGCGATTTTTAGTGGTTAAAT
TTGCGATTGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGTAATAAGTTGGAGATTTGATATTTCACAGAAAAGTGCTACC
AAGGGGTATTTAGGGTCCCATATCTTCCGAAGGACTCTTTTGTTTACCTT
GAAATTTAACAAACTTCCCAACCTAAGGTTGAACTACAACTGGTGTAAAA
ATGAACGTTATATCATAAGTAGAAAAAAAGCTCAATTTTTGCAATCGCAT
ATTTTACCACTAAAAATCGCGAATTTTTCAACCAAAAATACATTCAAATA
TAGCGCTTTTGATTCTCTAAAACAAGCAAAAAAAATTTCCATAATTATAT
TTGACTATCAAAAGTTACAAGCATTCTTGTTTCCACTGCCAATTATATCT
GGACAGACTTTAGGGTGGGGATTTATTTTGGCGGCTGGTGGAAGAAAGAA
ATTCTTAGGGGAATTTAATTTTTTCAATTTCGGCTAAATTACTATTGGAT
GGTTTCGGCTTACAAGCTTCTATTTTAGAATTTCATCACAATACTGCTAT
TTTGAATTTTTTCTTTTGATTTTGATTATTGGACCTACCCCGGTGGAGGT
CCTATAAATTAACCTTTGTCCGTCCGTCCGTCTGTCCGTCCGTCCGTCCG
TCCGTCTGTCCGTCCGTTAGTTTCCAGCTTTTCTCATGATTGGCTCATTA
GTTTTTTGCACAATGATGCAAAATGGCAATGCCCAAAATATGACGGAGCC
CGATTTTCGAAAAAAAATTTTTTGGGGCAAATTTGGGCCAAAAAACAGCT
AAAAAACGGGTTTTTTGGCTTTTGTGAAAAATTGGATCATTAATTTTTTC
TGATTTTTTGCACGAAAGTAGGGTACCATCATAGGTATAAGATGGCTCAA
GCAGATTTTTGCAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCCAAATTCGATATATTTTTATAAGCACATTATCAATTACTTAGGCATTG
GCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTACACAAAGA
TGCCTAACTATAAACCCTTGAATGTGACAGAACCGGATTTTCGAAAAAAA
ATGTTTTTGGGCAAATTTAGGCCAAAAAACGGCTAAAAAACGGGTTTTTT
GGACTTTGTGAAAAATTGGATCATTAATTTTTTCTAATTTTTTGCATAAA
AGAAGGGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAATTACTTAGGCATTGGCTTTTCTCGAGATTGGCTCTT
TCATTCTTTATGATTTTTTACACAAAGATGCATAACTATAAACCCTTGAA
TGTGACAGAACCGGATTTTCGAAAAAAAATGTTTTAGGGCAAATTTAGGC
CAAAAAACGGCTAAAAAATGGGTTTTTTGGACTTTGTGAAAAATTGGATC
ATTAATTTTTTCTAATTTTTTGCACAAAAGAAGGGTACCATCATAGATAA
AAGATGGCTTAAGCAGATTTTTGCAAAAAAAAATTTGTTGGCTCAAAAAA
AGCATGTTTATCTATAAGAATCACTAATAAGCATACATCAATGTTCTCAG
TCAAATTACTGAATTTTTTTATGATATAGATGTTTTTTTTTCTCACGAGT
GTTTAGACAGGAAATTTTGGTTGTTTGGCGTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATATTGGACCATTGT
TTTTTTTCTGATTTTTTGTATGAAAGTAGATAAAAGATGGCTCAAGCAGA
CTTTTGTAAAAAATGAATTTTTCAGCTCAAAAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
TTTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTATTTG
TGTTCTGAATGATTGTTTAATGGTCACGTCACGTAGATATCAATTATAGG
TCCATCAAAGTATCACTTGTTATTTGTGAATTTAAATTGTTTTTTCTACA
GAGGTGAAAGAATTACAATCTCACTTTGAAGCAAAGATTTACCGTATATC
ACGCACAAAGAAAGATGTAGAAATGTATCGAGACGGGGGTATTGCTATCA
TGGACCAATGGATTGCTGCTCATGGCAGGTATGGAAAGAATGGAAATCTG
TTTAAGAACCGCAGTAATTTTTTGTCGAGCCTTATCCGTTCCTCAAATTT
GTTCTTATCCTGCTCTTAATTTTAGGGTAATATTGAGGTATTTTGGGCTT
TTTTCAACTTTGACTTTTTATTTTATTCAGTCATTCCAGCCTCAGCTACG
TTCTCAAAATTTAATTTCCTTTGACGTTTTTGAGCCTCCATTTTCTTATA
AAATTGTTCTTATTAAAAAAGAGTGTTTATGTCTATATCCTTTTGGGGTC
ATTCGACGGAAGCCCTAATTATTATATATTTCGAGAAAAATCAGGTTACT
TTTTTTCAAACTCACAGCTTTTGACCAAAAGTTTAAACTTTTTTAGAGGG
TGGTAAACGCGAAATTTTCATTTTTGCTTGGATTTTCTCCGGAAATGAAA
TTACCATATCATATAACACATAACACATTTTTAACCTCGTTTTCAGGTAT
TTCATTGGCACATGTTCATCTACATTTTCATTTCGTATTTATGAAGAACG
AGATATCTTAGGATTTGACCCTAAAACAACGTACAATTGTATTTGTGGTC
AACAAGCACCAAAAGACCGTTGTGAACAGCCTGGTGGATGGAGAGTCAAA
TTCGGTTAAATCTGAATAATTGATTATCAATTTTTGTTCCTTAACACTTT
TTTCAGACAATATTCAGGTTCTATTGAATTATTTACATTTTTTGGAACTT
TTGGAAAAATTAGTTCACAATATTTACAAAGGCTTTAAANGATTTGACCC
TAAAACAACGTACAATTGTATTTGTGGTCAACAAGCACCAAAAGACCGTT
GTGAACAGCCTGGTGGATGGAGAGTCAAATTCGGTTAAATCTGAATAATT
GATTATCAATTTTTGTTCCTTAACACTTTTTTCAGACAATATTCAGGTTC
TATTGAATTATTTTCATTTTTTGGAACTTTTGGAAAAATTAGTTCACAAT
ATTTACAAAGGCTTTAAATTTTATTATTTTTTATTATTTTAATATTTATT
ATTTTAATTATTTTTGTTTATTCAACTCTTTTTATTCAGGTTTTATTGGA
CGGTTAAAATTGAATCATTTGCTTTTTAAGTTAAGGATCGATACTTCTTC
GCAAATTCAGTTTTTACAAAATGTTAACAATCTTCAATATTTTCCAAATT
TCAATGTACTTTCAAGTCAGGTATTCAAAGTAGTTATAATTGAATTTTCA
TTGAATTGTTCATTTCAGTATTTTGTCATTGATATTCATCGTCGTTATTT
TCCTTACTTAACTTGATGGGATAAACTTTTGCAGGGATCAAATTTCCTGG
TTGACCTTATCTTCGAAATGTTAAGATTCCGTGGGGACTTAATTTTTTAT
AAACATTTCGCGGATAAGGCCTTTCCAAATTTCCATTGAGACTTAATTTC
ACGGATGACATCCAAATTCGTGAAATGTTATCCAATTAAAGTAGCTTTCC
ATAACTTGTCGTGAAGAATTTGTTAACATTCAATAGCAGATGTTTGTTAT
AGAAAAATTCCATGTTAAATTTTTACATTCGGTGAGAAATTTTACAAGAT
TTTTTAAGTAAATTCCATTCGTGAGATACCTCGTATAAAGAAATACAGTA
GCAAGGGATGTTACCTTTTTTTATTTTGAGAAATAAGATACATGATAGCG
TTTTAAAATTTTATTCAGTAATAGAATGGTGCTTGGATAATGACTTTTAT
ATAGAAATAATTTTATACTTCAACTTAACTTTAATTAGCGTATACAAAAT
TTTGATAGTTACAATTTTCGTTAGTCCTCACTAGGAATATTTTAGTAGCA
ATTTTTGACATAGGGTGAATTTTCTTATTTATTTTTTTGTATCTTATTTA
TTAGCACAATAATAAATTTCAAAGATACAAATATAGTATTCTAAAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001442XLOC_001442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002661-exon-sc0000021-1575043694:161489..162262TCONS_00002661-exon-sc0000021-1575043694:161489..162262Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1575043694:157700..157766TCONS_00002661-exon-sc0000021-1575043694:157700..157766Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1575043694:156906..157212TCONS_00002661-exon-sc0000021-1575043694:156906..157212Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1575043694:153285..153411TCONS_00002661-exon-sc0000021-1575043694:153285..153411Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1575043694:152296..152816TCONS_00002661-exon-sc0000021-1575043694:152296..152816Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1575043694:151363..152134TCONS_00002661-exon-sc0000021-1575043694:151363..152134Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1510915933:161489..162262TCONS_00002661-exon-sc0000021-1510915933:161489..162262Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1510915933:157700..157766TCONS_00002661-exon-sc0000021-1510915933:157700..157766Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1510915933:156906..157212TCONS_00002661-exon-sc0000021-1510915933:156906..157212Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1510915933:153285..153411TCONS_00002661-exon-sc0000021-1510915933:153285..153411Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1510915933:152296..152816TCONS_00002661-exon-sc0000021-1510915933:152296..152816Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1510915933:151363..152134TCONS_00002661-exon-sc0000021-1510915933:151363..152134Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1491911889:161489..162262TCONS_00002661-exon-sc0000021-1491911889:161489..162262Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1491911889:157700..157766TCONS_00002661-exon-sc0000021-1491911889:157700..157766Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1491911889:156906..157212TCONS_00002661-exon-sc0000021-1491911889:156906..157212Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1491911889:153285..153411TCONS_00002661-exon-sc0000021-1491911889:153285..153411Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1491911889:152296..152816TCONS_00002661-exon-sc0000021-1491911889:152296..152816Clytia hemisphaericaexon
TCONS_00002661-exon-sc0000021-1491911889:151363..152134TCONS_00002661-exon-sc0000021-1491911889:151363..152134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:151363..162262 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.61211	3.41929	5.02121	4.84423	34.4475	23.6292	22.8061	19.8585	8.22151	10.7391	5.03212	4.7256	2.24154	3.68894	3.01439	3.73416	3.86179	3.41225	1.13141	2.36788	1.8866	2.76066	2.44068	2.95858	3.04727	3.90523	1.70265	0.259587	1.5751	2.60777
Blast
[Close]
BLAST of TCONS_00002661 vs. Swiss-Prot (Human)
Match: OFUT2 (GDP-fucose protein O-fucosyltransferase 2 OS=Homo sapiens GN=POFUT2 PE=1 SV=3)

HSP 1 Score: 349.362 bits (895), Expect = 1.376e-110
Identity = 186/391 (47.57%), Postives = 267/391 (68.29%), Query Frame = 2 
Query:  269 RYIMHDVNPGEGFNLRRDVYIRIANLVKRLNEEENQHWILVLAPWKHLYHWQNRYLDQNGEPWSNFFDVASLNRYVPVMEFDDFLQITGSSSIDLVMYLQRHPDGFS-GGWKEMCEVGKCGDRIPFSKQGNKW-RSNFWGHHEVVAQDLDCYDVQGHATILIDTL-KKVKARSILVDRFEQVLHTDYGSVEFYKARRSLVFAQHLREVADKFREXXXXXXXXXXXXPYADDWRKQMPEDGSALGGPYLSLHMRRGDFTYAHQETVPSIEEIGTEVTXXXXXXXXXXXXXATDGTDEEVKELQSHFEAKIYRISRTKKDVEMYRDGGIAIMDQWIAAHGRYFIGTCSSTFSFRIYEERDILGFDPKTTYNCICGQQAPKDRCEQPGGWRVKF 1432
            RY+++DVNP EGFNLRRDVYIRIA+L+K L + E   W+LVL PW  LYHWQ+  + Q   PWS FFD+ SLN+ +PV+E++ F+  +G   ID V  LQ + +G+  G W+E  +   C D++ +S+  +++ R  FWG+ E    ++ C  VQG A+I+   L +   ARS+++DR E +LH  YG  E++  RRS+VFA+HLREV D+FR + L STDD D+ P+ +DW K   + GSALGGPYL +H+RR DF + H++ VPS+E    ++   +K ++L KV++ATD   +E +EL+     ++ R   T +++E+Y+DGG+AI+DQWI AH R+FIGT  STFSFRI+EER+ILG DPKTTYN  CG Q  +  CEQP  W++ +
Sbjct:   44 RYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEE--WVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLL-PEMVRFEPTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQ--EKACEQPTHWKITY 429
The following BLAST results are available for this feature:
BLAST of TCONS_00002661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OFUT21.376e-11047.57GDP-fucose protein O-fucosyltransferase 2 OS=Homo ... [more]
back to top