TCONS_00002656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002656
Unique NameTCONS_00002656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002656 ID=TCONS_00002656|Name=TCONS_00002656|organism=Clytia hemisphaerica|type=transcript|length=356bp
GTGCTCAACCAGCTCTTAATACAAAACTCAATGATATGATATCTAACATG
caagaaattgataaaaacaaaaatgcatTTTCAGACATATTTGTACcacc
agaaatttttaaatacattGACGAGGGACGTAACCCAAGGCTATACACTA
AGGATTGTTTACAAAAGGTCCGCGAAAAGAAGGAGGAGGTTGACAGCAAG
GTGGATgcttataagaattttaaagGAATCCTTgaagaagaattgaaaaa
agaattgccACAAACTATGGATAAGCATTCCAAATTCAAACGACAACAAC
ACAAATGAAAAAGTGATCTTGGATTTGATTTACCTTGAGTTCTCCTTGTA
TCGCTG
Run BLAST on NCBI

protein sequence of TCONS_00002656-protein

>TCONS_00002656-protein ID=TCONS_00002656-protein|Name=TCONS_00002656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
AQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTK
DCLQKVREKKEEVDSKVDAYKNFKGILEEELKKELPQTMDKHSKFKRQQH
K
Run BLAST on NCBI

transcript from alignment at sc0000021:715..1648-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002656 ID=TCONS_00002656|Name=TCONS_00002656|organism=Clytia hemisphaerica|type=transcript|length=934bp|location=Sequence derived from alignment at sc0000021:715..1648- (Clytia hemisphaerica)
GTGCTCAACCAGCTCTTAATACAAAACTCAATGATATGATATCTAACATG
CAAGAAATTGATAAAAACAAAAATGCATTTTCAGACATATTTGTACCACC
AGAAATTTTTAAATACATTGACGAGGGACGTAACCCAAGGCTATACACTA
AGGATTGTTTACAAAAGGTCCGCGAAAAGAAGGAGGAGGTTGACAGCAAG
GTGGATGCTTATAAGAATTTTAAAGGAATCCTTGAAGAAGAATTGAAAAA
AGAATTGCCACAAACTATGGATAAGCATTCCAAATTCAAACGACAACAAC
ACAAATGAAAAAGTGATCTTGGTTAGTCCTGAGATTATGTTTTTGGATTC
TTATTCAAGTTGTGATGTAATACACCCTGTGTCATCCCGGTGAGATATAA
CCTACATTTTCAGCCCCACTTGGAAATTGACATTGTTTTCATCCTAGTTT
GAAATTCAATGGAAGGAAAATTGCAATCCAAAACTATCCCCAATGAATTT
TTTAGACCTGAGCACAATAGAATTTTTATGCCCTTTGAGATTTCTTAAAA
ATGTTCATCTCCACTGCGGGAAAGAAGTTCCATCGGGGCTGTGAGACAGG
GGTGTAATAAATTCGTTATGCAAATTTGTTTGCATGATTGTGATTTCAAT
TGATAACATGAATGGACGCCAGGATTTTATAACATGGAGTAATAAAGGTT
TACTTTGGGGATATCTTCATGGAATGCAATCTTTATTATTTTCAAGTGCG
AGAAATTAATTTTAGGGGTGGTTATACTTTCCAGACAAAAAGGTGATTGG
ATCAAACCTAAGGTAGTTTTCTTGACATAATAAGCCTCTTGCCGTATTGA
ATAGATATGATTTTTTTAGATTCACAGGATTCACCAATTTACATTACAGG
ATTTGATTTACCTTGAGTTCTCCTTGTATCGCTG

Coding sequence (CDS) from alignment at sc0000021:715..1648-

>TCONS_00002656 ID=TCONS_00002656|Name=TCONS_00002656|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000021:715..1648- (Clytia hemisphaerica)
GCTCAACCAGCTCTTAATACAAAACTCAATGATATGATATCTAACATGCA
AGAAATTGATAAAAACAAAAATGCATTTTCAGACATATTTGTACCACCAG
AAATTTTTAAATACATTGACGAGGGACGTAACCCAAGGCTATACACTAAG
GATTGTTTACAAAAGGTCCGCGAAAAGAAGGAGGAGGTTGACAGCAAGGT
GGATGCTTATAAGAATTTTAAAGGAATCCTTGAAGAAGAATTGAAAAAAG
AATTGCCACAAACTATGGATAAGCATTCCAAATTCAAACGACAACAACAC
AAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001438XLOC_001438Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002656-proteinTCONS_00002656-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002656-exon-sc0000021-1575043694:1328..1648TCONS_00002656-exon-sc0000021-1575043694:1328..1648Clytia hemisphaericaexon
TCONS_00002656-exon-sc0000021-1575043694:715..749TCONS_00002656-exon-sc0000021-1575043694:715..749Clytia hemisphaericaexon
TCONS_00002656-exon-sc0000021-1510915933:1328..1648TCONS_00002656-exon-sc0000021-1510915933:1328..1648Clytia hemisphaericaexon
TCONS_00002656-exon-sc0000021-1510915933:715..749TCONS_00002656-exon-sc0000021-1510915933:715..749Clytia hemisphaericaexon
TCONS_00002656-exon-sc0000021-1491911889:1328..1648TCONS_00002656-exon-sc0000021-1491911889:1328..1648Clytia hemisphaericaexon
TCONS_00002656-exon-sc0000021-1491911889:715..749TCONS_00002656-exon-sc0000021-1491911889:715..749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:715..1648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.5869	13.2299	19.8482	20.839	0	0	0	0	6.06831	8.07598	3.07436	4.7413	3.04192	3.06328	3.03333	1.43092	2.49206	1.91476	0	1.64371	0.650749	2.84312	5.03027	13.5989	0	2.98776	0	0	2.71832	5.47716
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019145Mediator_Med10
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Blast
[Close]
BLAST of TCONS_00002656 vs. Swiss-Prot (Human)
Match: MED10 (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.316e-24
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:    3 AQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTKDCLQKVREKKEEVDSKVDAYKNFKGIXXXXXXXXXPQTMDKHSKFKRQQH 302
            +Q  LN KLN +++ +Q+IDK +    DI VP E+F+YID+GRNP+LYTK+CL++   K E+V  K+D  K FK +L +EL K  P+ M K+   + + H
Sbjct:   33 SQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIRGEDH 132
The following BLAST results are available for this feature:
BLAST of TCONS_00002656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED107.316e-2445.00Mediator of RNA polymerase II transcription subuni... [more]
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