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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002654 ID=TCONS_00002654|Name=TCONS_00002654|organism=Clytia hemisphaerica|type=transcript|length=288bp
GCTATGGTCATTTAGTTTGTTTATCAGTTTAATGAATAATTAATGAGGCA
TTTTGCTGGCAGCTCTGTTTCAGAATATAGTTTGACCAGCTTCTTCAGTT
GTTCAAAGATCTCGTTGGATTACAGACATACTCCAAgaTGAGATCTTGTA
TCGCTATCGTATTGCTCTTGGCAGCAATTGCCAATGCCAAATCAGTTCAT
GAAGGTGGAAAAAGGAGGACTCCACAAGCATGCGGAGGAGACTGTCCTGC
TGCGTGTGCACCTGCCTGTTTACCAGTATGCTGCGCAC Run BLAST on NCBI transcript from alignment at sc0000021:1033274..1036929+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002654 ID=TCONS_00002654|Name=TCONS_00002654|organism=Clytia hemisphaerica|type=transcript|length=3656bp|location=Sequence derived from alignment at sc0000021:1033274..1036929+ (Clytia hemisphaerica)
GCTATGGTCATTTAGTTTGTTTATCAGTTTAATGAATAATTAATGAGGCA
TTTTGCTGGCAGCTCTGTTTCAGAATATAGTTTGACCAGCTTCTTCAGTT
GTTCAAAGATCTCGTTGGATTACAGACATACTCCAAggtaaaaatttgtt
cttatttttctttgtttttttgtatttttttcataattatttcaaGCATT
TCAgtctatttttgtattttcttcttttattcatttCATTTCTTTCCTTG
ATTGCTCtttctttcaattttaattttgccAATTACATTATTATGCCATG
ATTGCATATatcatttcaaaattattcaaaGTTATTATCAATTCTTTTGC
AACTAAGTAGCAACAGATCCTTAAGTCTATATTTAGaaaagttttttcca
aaaattaattaattcaaTATGAATTAGATAACTTAATATAATTAAGTTTT
TCTGCTTCTAGGTCTTCACAGACAACAATGTGAccataaatttgaaaaaa
atagtgaTTTTTCCAGCAATTTTTTATGATTGTTGATTGTTGATGAGATT
GgaccaaaataatttttaaaacttctcGTGAATCTTgaagaaaacttttt
ctttgttacgaatcaaaaatattatataaaaaaaatgaaaactcttgTAA
AATTCTTTTCCATCCAGTTTCATATTTTTATCAAgtatttggcaaaattt
gattaaaaaattaacgttcataataattatttcaataaaaaataaattat
atttaaaaaagtaattttgtcacttttattATACAGAGAATATCTCTAAC
ctaaaaaaacctaaaaatcttttttattttatttttatttttaaaataag
ataTGTGTATTTTTCCTTATGAAGTCAttaatgttaatcacttcagtgtt
taAAATCGCCCAAggattttgaataatttcttgctcattgaatttaaaaa
agttaaacttGATATAATTGATTTATCTTTAACGTTTTCAACAATTATTG
CTTTAAAAGTAAAATACTAAAAGCATTTTGCACTTTTAACAAATTTGAAA
AGCTATAGAAAAAAGATCTAAAAATTTCATAACCTGCTTAAAATTTatcc
aaaaatattaaaattctgttaaaaatattatcttcaaaaattgcATAACA
TTTgctaaacaaagaaaatcaaacattcgaacattgactagaaaaattaa
accattgtttacaaaaacaattgaaacaataaacAGATTTTCACACTTCA
ATAATTTTACACAATGCTGAATATGAGTAAATGAATTGAACAAAAGATCA
TAAAGTGTATTCAACCGAAACAATAAACAAAAGTTAATGAAccgtataat
ttttttctcgaacGCTGCACTGATTCGAATCTTTtacaatttaatttttc
aaaaatcaacttCAGCCTATNTCGAATGCTGCACTGATTCGAatcttttt
caatttaatttttataaaaaatcaacttcagCCTATCCAAAGTATAGGGT
CTGAAAAAAAAGTCTGCAGCGGTAAGATAATAATTatatattcaaaataa
aacttaataaaattaataaagtATTTTAAATTATCGTAATATAATAGCAA
TGAAAGATATATCAATAGTTAATACAATGCAAATTGAATCTTCGTATAGG
ATTATGGAATGTGATTAGTTATTATAGATAAACTAATCAAAGTTTGGTCt
tgatgttttattttattttgaaattcggattttcttataataccattgaa
tgttttctttttcttctagaTGAGATCTTGTATCGCTATCGTATTGCTCT
TGGCAGCAATTGCCAATGCCAAATCAGTTCATGGTAAGTTAATattcatt
attatttttcattcttctttttcattttctttagtttttaaTTATGAAGC
AATCATTATTAGAAAGTTTCGATTTTACAATACAAAATTCGAATTGAAAC
GAAACAAATATTATAGagtgtaaattattttttgacaatATATTTGATGC
CTTGAGTTTCTTCAGaacaacttttgaatttttaaaactcGAAATCATAT
TTTCCTTTGTCTGAAATTAAGATATATTAAATTTTCTGATAATGactgtt
tcattttaaatttattcAACTCGTAGTCTTTTAATCCAAAAATATGTACA
TATCACGACAACATTTCTCATTCCGTTTtcaatatataaaaaattataaa
attactTTAAATAATAGTGACTTCAGTACACATTTTTGAATTAAGTTAGC
AGCATTTATCGGCTAATAATTTTGGAATGATGTACTCTGGAAGActtttt
ggcttttaaaattttttggtttcTTGAAGCACGCTAGTAATGCAACTTGA
AATTATCGCTACCATTTTGATAAGAACGTAAACTTTTTTTGCAAGTTAAG
AACTGAATTTAAAAGCACGATGAGTGGTTTATCCTATACTTTGATTAAAA
ATGTATCAAACTATTTTATTGCCTAAAAGCTGCGAAAAATTATTTGCCGA
TAAAATGTTGCTTACTCAGATAATATGCATTTATAGGCAAGTTATGCAGT
TTGTTTACTTTAGCATAGGGAAGTTTTGTAATCCTTAATCCAAGTTTGCT
CATATGTCACTAAGTATTATATTTTGCGCCAATATAATTTGAGAACTTAA
TCCTTAAAAGTTTTGCAACTAAAGAAAAGGGAatactctctaattcgaac
ctctgtaATTCAATTCTTTCTATGATTTgcgtaattcgaatttttctgta
attcaaaAAAGTAATGTTTTGTCAATTAAAGATCGGGAtagagagagagt
caactgtatcaTACAGTTTAAGTCGCTTTTGCCAAAGTATTTCTATTACC
AAAGCGATTTTTGAGTTTGTGAGCAAACTTGGTTAAAAGTTAAAATTACT
TGTCTTTATCAAGCAATGAAAGTTACAAACCACATTCAAATTATCATCCT
CaatccatttttttgaaaatcgatcCATATTCGAAATATGAGCATTGCTT
GATAAAGAACCAGGTTAAaagcatagatttataaagctcgaagggctaga
ggtaGACGTTGTGCCTTGGCTGAAAGGTGCGCCGTGGCTAGGTAGGATAT
CCTACCTAGGTCATGTGACATTACAATCAAATTTAAGCGCTTGATCAATT
AGAAGCTTCAAGgtttttttgcgatattcaattttttttgcctgcgatag
CTTGAAGCacaacatctagcccttcgggctttacaaatctatggataaaa
gtataaaaaagttttagttttgGCGAACGAGGAGCATAATGAATCAGGGC
CATTTTAGAgggaaaagtattttttttttgattttctcgaACGCCAATTT
AGAAAAATCATATAACTTTGATAAAAGGTGTCAACCATGTCATAAATATA
CTATGTCTCTTCATAAAGGGTCCTCATTCATTAGAACACAAAATGTGTAG
TCCTCCTCTTTCCAAAACATACAATCAAAAGTATAAAGAGTATAGAAAAT
AACAGCAAAGTTTCCTTAACCAAAAACGacaattttttgtacaaaaccTT
CTTTTACAATCTTTTGTAGAAGGTGGAAAAAGGAGGACTCCACAAGCATG
CGGAGGAGACTGTCCTGCTGCGTGTGCACCTGCCTGTTTACCAGTATGCT
GCGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002654-exon-sc0000021-1491911889:1033274..1033410 | TCONS_00002654-exon-sc0000021-1491911889:1033274..1033410 | Clytia hemisphaerica | exon |
| TCONS_00002654-exon-sc0000021-1510915933:1033274..1033410 | TCONS_00002654-exon-sc0000021-1510915933:1033274..1033410 | Clytia hemisphaerica | exon |
| TCONS_00002654-exon-sc0000021-1575043694:1033274..1033410 | TCONS_00002654-exon-sc0000021-1575043694:1033274..1033410 | Clytia hemisphaerica | exon |
| TCONS_00002654-exon-sc0000021-1491911889:1035043..1035106 | TCONS_00002654-exon-sc0000021-1491911889:1035043..1035106 | Clytia hemisphaerica | exon |
| TCONS_00002654-exon-sc0000021-1510915933:1035043..1035106 | TCONS_00002654-exon-sc0000021-1510915933:1035043..1035106 | Clytia hemisphaerica | exon |
| TCONS_00002654-exon-sc0000021-1575043694:1035043..1035106 | TCONS_00002654-exon-sc0000021-1575043694:1035043..1035106 | Clytia hemisphaerica | exon |
| TCONS_00002654-exon-sc0000021-1491911889:1036843..1036929 | TCONS_00002654-exon-sc0000021-1491911889:1036843..1036929 | Clytia hemisphaerica | exon |
| TCONS_00002654-exon-sc0000021-1510915933:1036843..1036929 | TCONS_00002654-exon-sc0000021-1510915933:1036843..1036929 | Clytia hemisphaerica | exon |
| TCONS_00002654-exon-sc0000021-1575043694:1036843..1036929 | TCONS_00002654-exon-sc0000021-1575043694:1036843..1036929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:1033274..1036929 + |
Blast
The following BLAST results are available for this feature:
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