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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002652 ID=TCONS_00002652|Name=TCONS_00002652|organism=Clytia hemisphaerica|type=transcript|length=2156bp
TTTATGGTTCATTGGTTATGCcattaaaatattatttgatcATCTTACCT
TCTGTATAATACCTGTTTTTAACGAGATCCATTcgaatttcttcactttc
aaaaaagtttaatttcttaACCGCTTTGTATCTTCTTCGAGCCGTCTTGA
CGAATCTGGTATATTCGATTCCAAGATGGATAAACGATTTTTGATCTTAC
TGGTCGCCTTCGTGGCATACACATCCGCTAAATCTGTTAGCCAGTTGAAG
AAAAGATCTCCATGCAGTTGCTCCCCACCACCATGTGACTGTGCTATTAA
CCTTCCACCACAAGTGATCAGTCTCCCTGCACCACCAGCACCTTGTATGC
CAGCCGGATGTGCCGCAGGAGGAGCTGCAGCTGCTCCACCACCACCAGGA
CCACCTGGACCAGCTGGACCACCAGGAGCCCCAGGAGGCCCAGGAGGACC
AGGACCAGCAGGACCTCCAGGAGCACCAGGAGGTGCTGGCTTTGCAGGTC
CACCAGGACCACCGGGACCACCAGGACCTCCAGGAGCCCCAGCTCCACCA
GCTCCTCCACCACCACCAGTCTGCTTACATCATTGTATGAGAATCTGTCC
CGCCCCTGCACCCGCCTGTGTAGCTGCTGCCCCTGCTTGTGCTGCTGCCC
CGTGCCCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCCCCACCTCCA
CCACCACCTCCTCCACCTCCCCCAccaccaccacctccaccaccaccacc
acctccATGCCCTGCTCCACCTTGTATGCCCCCACCACCACCAGTCTGTG
CCTGCTCACCACCTCCTTGTTCATGTGGGAAATAACCTCAATGACTTGTT
AATGAATTCTTATTCTATTTTGTAGATATTGTAGATTTTTCTAacgtaaa
attttcttttacaatACAAAATATTACCTataataaatcataaatcaatt
GAAATTTAGACAATtcctaaaaatcaaaaccaaGTATCCTCGTATATTTc
ttgaacaaaaagttttaacatAATTCTCAATAAGAATGTCACCGTTATAG
TGATTCTTCTGTCACTAAAGCACATTGTCGTTCTGTTTACCGAAGCAACT
TTCGAACCATCCTAACATGCTCCTTTTTAGCCTTGCCAGCGACATATTTC
CTTCTAGAATTAGATTTTTCACTGTACGCAACTTGCACGATACTGCTTCC
CAATGATCTACCAAAGTGGGTTTGGGAGAGGTTAGATACACTGATTTCAG
TAACAAACCTTGCGCGTTGACGCCGGATAGTTTGTCCTTTTGAACCTATT
AGATAACCAGCACATTCACCAGGGATATATAATTTACAATCTTCCTCGTT
TACTAcactattttcaaaacattgatgGATAAAGGCTTTCCTGAAAGCTT
TAACACCTTCATCATCAGCATCTACGTGATTTTCATCCACTTTTCCTTGT
TTTAACTTGCCTTCGAATTCTTCACTCCACTCGACCCATTGCACTTCAAT
CTCTTTCAGCAGTAATACCTTGAAGAGAAACAATCTTCGATTATCACAAG
TATAAAAACAGCAGCCTGGATTTTCCATATTACCACGAGTTGCGACTCGT
ATTCGTGGATATTCCCCAACATCTAAGGTTCCATCAAAGATAAGATGCAT
TGCTTCCATTATGGTAGGATGTGATTCATCCCAAAACTTTTTCACGGTCT
TCTGCGTGAGCTTGATTTCTTTGGGATCCATTATCACACTGTCTTCAATG
ACTTCAGATTGATTATGAGAAGATTTATTAGAACTTCCTTTGGACTTCTT
TGGTGCTGTTTTTCTCTGGGAGATCGGTTGAGCTGCCAAAGCAACTTCCC
CAGTAGTATCTAATCGAATGCCTTTTCTATTagattcatttttttcacat
tcTAATATATTCAATGGTATTTTTCTATCTCGAGTTTCCCACGCCTCTTC
CCAATGATCTATTCTTTCACGACAACAAGTCCACACAGCTAACGGCGGTG
CATATTTCTTGATGTAAGTGTGACTGGTTCTCTGTAAAATCAAATCTCCT
ATATGGGGCTTTTTTGTTACTttaatcatagtataagaaagccgcggctg
gaatatgtacagcattgtcttttcagttaattgctgttccatctctgtct
ccgagc Run BLAST on NCBI transcript from alignment at sc0000021:1010026..1017495+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002652 ID=TCONS_00002652|Name=TCONS_00002652|organism=Clytia hemisphaerica|type=transcript|length=7470bp|location=Sequence derived from alignment at sc0000021:1010026..1017495+ (Clytia hemisphaerica)
TTTATGGTTCATTGGTTATGCcattaaaatattatttgatcATCTTACCT
TCTGTATAATACCTGTTTTTAACGAGATCCATTcgaatttcttcactttc
aaaaaagtttaatttcttaACCGCTTTGTATCTTCTTCGAGCCGTCTTGA
CGAATCTGGTATATTCGATTCCAAGGTATTTGCTcatcatattttgatat
ttttacttGAGAATATTTCAGATTTCATTTTCTCACAATACTGGTAGATT
ATGAATTGGAGATGTATCGGAATAAAGCTTGGTTTNTCATTTGCTCACAA
TACTGGTAGATTATGAATTGGAGATGTATCGGAATAAAGCTTGGTTTCCa
atatcttttttaatttcaaggaaaaaatcttttgttattGGATCGGCCAT
TTGTTCTGATTCAATATCTTCGAAAACATCACAATAGATCTCATACATTG
CCTGAAATGTATCAAAGCTGAAATCAGGGTATTGGTCATGATAATCTAGT
AAAAGATAGAAAGATTATTActaagaaaacatttttaataatgatattct
cttttattttctttacagATGGATAAACGATTTTTGATCTTACTGGTCGC
CTTCGTGGCATACACATCCGCTAAATCTGTTAGCCGTAAGTAtcttattt
tattcattttcaaatacagttgacgttctactattcgatgttctactatt
cgataggcttccttattcgatgaaatttatagtccccgtcaacaagaaat
tatcataaacgacgctcccttattcaataagctcccttattcgatgaaaa
tccaagtCCCCTtcaagatcgaattagagagcgtcaactgtacctAAATG
CAAGAAATTCCTCTTCTTATTCTTGCTTTATTCCCAATCTAAAAATGTTT
TGGATTTAGCGCGTATCGAAAGACAACAATAAATCCCACAAAGTCGTGTA
CAAATTCGGATATTTGCAGCGAAGAAGATATTGTACTTTGATGCAATATT
TTAAAGTTGCTTTTACGATATTACGATAAGAATTACGATATTCATGGCTA
TTTTGCGCGCATTTCACAACATTTTTGGATACAGGATTTATATTACGcac
gaaaaaatttgaatataattcgAAAGGACTCGAAAACTTAANACAGGATT
TATATTACGcacgaaaaaatttgaatataattcgAAAGGACTCGAAAACT
TAAACTAATCTTACATATCTCCGGAGAAACCTTCCTTACTCAATTccaaa
aaatccaaactttGTTATATGACAGTCATTACAACTTTGTGTGAAAGAGA
AAGActtttgttccttttttcacaaaaattattGAAACTGCATGATGAGT
CTATATAATATCCATTTGACATAATTTATCTAAcacatatatatatattt
atagCATGTTAGATATTATATTGTTGCATGGTTAAATGCACCTCAAAATC
TGATTCTTTTGGCTTTAAACTGATAGAAAACTATATACCTATACACAATC
ATTTTATACAAAAACATGtacagcaaaaatttcaaaacaatctgCTTTTA
ACCAGGAACAAAATGGTGACTCTGGTTCGATTTCATTGGATCATCATTTC
ATAGTTATAAACAAGCAACTTGCTGAAACAGGATGTGCCGCCACAACTTC
AAAAATACTTACTAAAGTTTCANTTCATTGGATCATCATTTCATAGTTAT
AAACAAGCAACTTGCTGAAACAGGATGTGCCGCCACAACTTCAAAAATAC
TTACTaaagtttcaatattttttttggaaaagagaattaaaaaaagagcT
TTACTCTTTCACACCTAATGGACATAATTTATTGTTCCTTTTAGGTGTGA
AGAAATCTGCTAACCCATGTGGCTGCACTCCTGCTCCAGCTTGTTGTGCC
ccaccaccacctccaccaccagcCCCAATGTGTGCATGTGCCCCAGCACC
AGCCCCATGTGGTTGTGCCGGAGGAGCCGGTGCTGCCCCACCAATGCCAG
GACCCCCAGGACCGGGAGGACCACCCGGAGCCCCAGGAGGCCCAGGAGCT
ATGGGACCCGCAGGACCTCCAGGACCCCCAGGAGCCGGAGGATGCGGAGG
ACCACCTGGACCACCAGGACCACCAGGACCTCCAGGAGCACCAGCCccac
ctccaccaccaccacctccAATCTGTCTCCACCATTGTATGAAGATCTGC
CCAGTCAGTGCCCCTGCCTGTGCCCCACCACCACCAGCTTGTGCCCCACC
ACCATGCCCAGCTCCACCACCATGTGCCGCTCCACCATGTGCCCCACCAC
CACCATGCCCNGTGCCCCACCACCACCAGCTTGTGCCCCACCACCATGCC
CAGCTCCACCACCATGTGCCGCTCCACCATGTGCCCCACCACCACCATGC
CCAGCACCTTGTCCACCACCAATGCCATGTGCTGCTCCACCATGCCCGCC
ACCTATGCCATGCCCACCACCATGTCCACCACCTTGCccaccaccacctc
caccaccaaTGTGCACCTGTGGGCCACCACCATGCTCCTGTGGAAAATAG
AGTGGATAATAAAACGACGCATTATTGTTAATAGATGTTAAATGAGTCAT
TTAAGCAAATCACTTTGCttgatttcaatttcaacaaaatcaaTCTCCAG
AAGATACTTTCCTTGAGGAATGAATATGGAGATCTTAACTTTTACGTTAA
GAAATTTCCTCATAAGATTTTTCTTATGTATAATTTCAATAACTATACTA
TGAcacatatttttataaataaaagaatctctagaaaattataattgaat
tgaaaatattttctgcaTTTACTTAACGATCCTTTCCAATCAATTTCTTA
CGAAGGTCTGAATTTCTAGCTCTCTGAATAAACAATACATTTTTCCATAG
TTAGGATATTTAGGGTgcattaaagtctattcacgataagtgggcactct
tttttcttttacctataacttttgaaggaattcttcaatctttaaacATT
Tgctatcgttggagagatatttgtgagtggaacaattttaaataaaaaag
tctttaaaaaaataccaaaaaacgaagatgaaaatgaagaagaaaaaaat
gaagatcttttagagaaatgctataactttcattttcacttgagaggttc
tttgatcttaggaggtcatcactgtgaagaaattttactaaaatatttat
tcaatataaagttatgatacaaagttaataagtgattgaccccaaaaaac
agcagataacagcagaaaacagcgtttttagacgtcaatcagcttataac
tttgtttgatatcttttcgctgaatgattatttttgatacattttttcac
agtgatgacgttcgataatcaagggttcacttcagtgaaaatgagagtta
tagcacttttctacaagatgttcatttttttcttcttcattttcatcttc
atttttagaatttttttaaagacttttttatttcaaattgttccactcac
aaatgtctctccaacgatacccaatttataaagattaaagaattccttCG
AAAgatataggtaaatgaaaaaagagtgcacacttatcgtgaatagactt
tagtttcgtattcatttgaaatcaaaaaattacacTCCTGTCAATTTTAC
GCTGCAAGATTGCCAGATTTAAAGTCATATGCAACATATTTGGATTTTTC
AATTTGCAAGTTTTAagtatatttatttataaattttgaaCTTTAGAAAA
AAGCATGTTAGTTTTTCTccccaatagaccttttcataaattacgtcatg
aacatcacttgcctcgttttgaaattattgccatggtgattaagtCCCAG
TGGATTattttaaaactactttctatttataaaaaaataatttgatgtct
AAAGGGATATAATTACCatagtaattgtttgaatacgaagcaagtgatgt
tcgtgacgtaatttataaaaaggtctattaaataGAAATTGTTTTTACTA
TTATATGAGGCATGAAAAGTAATGAACAATGCACGATGTATGTAAAATCG
AATTCGGTGATCTACGCTCCTTATCAAATACtcttaaaaaactttaaaca
aaaattgaaacaaaaattgaaaaaaaaaagatttagcatcaaatattttg
attttttaattttctacttttcatcGTAGATGGAGATAAACGATCACCCT
GTTCGTGTTCAGCACCGCCATGTTCATGCCAAGAACTCCCAATGCAAACC
ATCACTATCCCAATGGCTGCCCCATGTGCACCACCAGCCTGTGCCCCACC
ACCACCAGCTTGTGCCCCAGCATGTATGCCAGCATGTGCACCAGGATGTG
GTGCCGGTGGAGCCGGAGCCGCTCCACCACCACCACCACCACCACCAGTC
CCAGGACCACCAGGATCTATGGGACCAGTCGGACCACCAGGAGGACCAGG
AGGCCCAGGACCAGCTGGACCTCCAGGACCACCAGGAACCCCAGGATCAG
GAGGTCCACCAGGACCACCAGGACCACCAGGACCTCCAGGAGCCCCAGCT
CCACCAgctccaccaccaccaccagtCTGCTTACATCACTGCATGAAAAT
CTGTCCAGCTCCAGCACCTGCCTGTGCGGCACCTCCACCtccacctccac
caccaccaATGTGCACCTGCTCGCCACCACCATGCTCATGTGGAAAATAG
ATTTCtttctaaaatcaaatttaGAGACACTCTGTTAAAATTGACTATGA
TAATATTACTCAATCTTGAGTTCTATTCCTTTTATGGACACTGCAAACTT
aataaattctattttttttgatgttcgtaaaattgtaaatttagatattt
tttgaaagaattataCTTCCACTTTACACATTTACAcataaacaaaatct
ttctcAATTTAGCTTGGATATTTCCTTGATTAGTAAATTTACGTATCCTT
TATATTTTGCACGATTGCATGAAAgtattttggctgaaaaagtGATCAAT
CCATTAACCCTGGGAAGAGGTCTCAATATACTGCAAGTTAGGTAAAGTGA
ACTATTATAATTGTGGCCCTTAGAGTTAAGTTTTCCAGGCTTCCCAAATT
TCGTTTGATGAGTCAATAGGAGGGTGAGGGTGCAATATTGGAAAAGGTAA
AACATTTAGATAAAAGCAACtttgaacaaaaacaaaaaccaacaaaaatc
TGACAATGCTTACACTTTAATTGacaaaatttcaactttaaagtcaatat
tttgtttaaaattagctaaatgttttgtttgcacacataaagtcatttta
aaatctcataaaagaaattttctctgaacttcaaactttcaaaaattata
atacATCTTTGTAGACATTAACGTTTAGGTTCTCCTACTTATATCTATCG
ACCCTTTGCACAAAACGAACTTTTGTTAGTTAActagtgagacaggggtg
tatgttCCTCTCCCAAGTGACAAAAAAGCTAAAGTATAGTCGCGACTTTG
GGATTCGGATTCTATATTGAGAAAATTAGGCATAACTTATCTTTCTTTTA
TCCTAGAGTTGAAGAAAAGATCTCCATGCAGTTGCTCCCCACCACCATGT
GACTGTGCTATTAACCTTCCACCACAAGTGATCAGTCTCCCTGCACCACC
AGCACCTTGTATGCCAGCCGGATGTGCCGCAGGAGGAGCTGCAGCTGCTC
CACCACCACCAGGACCACCTGGACCAGCTGGACCACCAGGAGCCCCAGGA
GGCCCAGGAGGACCAGGACCAGCAGGACCTCCAGGAGCACCAGGAGGTGC
TGGCTTTGCAGGTCCACCAGGACCACCGGGACCACCAGGACCTCCAGGAG
CCCCAGCTCCACCAGCTCCTCCACCACCACCAGTCTGCTTACATCATTGT
ATGAGAATCTGTCCCGCCCCTGCACCCGCCTGTGTAGCTGCTGCCCCTGC
TTGTGCTGCTGCCCCGTGCCCACCACCACCACCTCCTCCTCCTCCTCCTC
CTCCCCCACCTCCACCACCACCTCCTCCACCTCCCCCAccaccaccacct
ccaccaccaccaccacctccATGCCCTGCTCCACCTTGTATGCCCCCACC
ACCACCAGTCTGTGCCTGCTCACCACCTCCTTGTTCATGTGGGAAATAAC
CTCAATGACTTGTTAATGAATTCTTATTCTATTTTGTAGATATTGTAGAT
TTTTCTAacgtaaaattttcttttacaatACAAAATATTACCTataataa
atcataaatcaattGAAATTTAGACAATtcctaaaaatcaaaaccaaGTA
TCCTCGTATATTTcttgaacaaaaagttttaacatAATTCTCAATAAGAA
TGTCACCGTTATAGTGATTCTTCTGTCACTAAAGCACATTGTCGTTCTGT
TTACCGAAGCAACTTTCGAACCATCCTAACATGCTCCTTTTTAGCCTTGC
CAGCGACATATTTCCTTCTAGAATTAGATTTTTCACTGTACGCAACTTGC
ACGATACTGCTTCCCAATGATCTACCAAAGTGGGTTTGGGAGAGGTTAGA
TACACTGATTTCAGTAACAAACCTTGCGCGTTGACGCCGGATAGTTTGTC
CTTTTGAACCTATTAGATAACCAGCACATTCACCAGGGATATATAATTTA
CAATCTTCCTCGTTTACTAcactattttcaaaacattgatgGATAAAGGC
TTTCCTGAAAGCTTTAACACCTTCATCATCAGCATCTACGTGATTTTCAT
CCACTTTTCCTTGTTTTAACTTGCCTTCGAATTCTTCACTCCACTCGACC
CATTGCACTTCAATCTCTTTCAGCAGTAATACCTTGAAGAGAAACAATCT
TCGATTATCACAAGTATAAAAACAGCAGCCTGGATTTTCCATATTACCAC
GAGTTGCGACTCGTATTCGTGGATATTCCCCAACATCTAAGGTTCCATCA
AAGATAAGATGCATTGCTTCCATTATGGTAGGATGTGATTCATCCCAAAA
CTTTTTCACGGTCTTCTGCGTGAGCTTGATTTCTTTGGGATCCATTATCA
CACTGTCTTCAATGACTTCAGATTGATTATGAGAAGATTTATTAGAACTT
CCTTTGGACTTCTTTGGTGCTGTTTTTCTCTGGGAGATCGGTTGAGCTGC
CAAAGCAACTTCCCCAGTAGTATCTAATCGAATGCCTTTTCTATTagatt
catttttttcacattcTAATATATTCAATGGTATTTTTCTATCTCGAGTT
TCCCACGCCTCTTCCCAATGATCTATTCTTTCACGACAACAAGTCCACAC
AGCTAACGGCGGTGCATATTTCTTGATGTAAGTGTGACTGGTTCTCTGTA
AAATCAAATCTCCTATATGGGGCTTTTTTGTTACTttaatcatagtataa
gaaagccgcggctggaatatgtacagcattgtcttttcagttaattgctg
ttccatctctgtctccgagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002652-exon-sc0000021-1491911889:1010026..1010200 | TCONS_00002652-exon-sc0000021-1491911889:1010026..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002652-exon-sc0000021-1510915933:1010026..1010200 | TCONS_00002652-exon-sc0000021-1510915933:1010026..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002652-exon-sc0000021-1575043694:1010026..1010200 | TCONS_00002652-exon-sc0000021-1575043694:1010026..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002652-exon-sc0000021-1491911889:1010594..1010660 | TCONS_00002652-exon-sc0000021-1491911889:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002652-exon-sc0000021-1510915933:1010594..1010660 | TCONS_00002652-exon-sc0000021-1510915933:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002652-exon-sc0000021-1575043694:1010594..1010660 | TCONS_00002652-exon-sc0000021-1575043694:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002652-exon-sc0000021-1491911889:1015582..1017495 | TCONS_00002652-exon-sc0000021-1491911889:1015582..1017495 | Clytia hemisphaerica | exon |
| TCONS_00002652-exon-sc0000021-1510915933:1015582..1017495 | TCONS_00002652-exon-sc0000021-1510915933:1015582..1017495 | Clytia hemisphaerica | exon |
| TCONS_00002652-exon-sc0000021-1575043694:1015582..1017495 | TCONS_00002652-exon-sc0000021-1575043694:1015582..1017495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:1010026..1017495 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR015946 | KH_dom-like_a/b |
Blast
The following BLAST results are available for this feature:
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