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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002651 ID=TCONS_00002651|Name=TCONS_00002651|organism=Clytia hemisphaerica|type=transcript|length=1277bp
caCGGCTTATTAAATTTGCTCAATGGACCGTTTTATGGTTCATTGGTTAT
GCcattaaaatattatttgatcATCTTACCTTCTGTATAATACCTGTTTT
TAACGAGATCCATTcgaatttcttcactttcaaaaaagtttaatttctta
ACCGCTTTGTATCTTCTTCGAGCCGTCTTGACGAATCTGGTATATTCGAT
TCCAAGATGGATAAACGATTTTTGATCTTACTGGTCGCCTTCGTGGCATA
CACATCCGCTAAATCTGTTAGCCATGGAGATAAACGATCACCCTGTTCGT
GTTCAGCACCGCCATGTTCATGCCAAGAACTCCCAATGCAAACCATCACT
ATCCCAATGGCTGCCCCATGTGCACCACCAGCCTGTGCCCCACCACCACC
AGCTTGTGCCCCAGCATGTATGCCAGCATGTGCACCAGGATGTGGTGCCG
GTGGAGCCGGAGCCGCTCCACCACCACCACCACCACCACCAGTCCCAGGA
CCACCAGGATCTATGGGACCAGTCGGACCACCAGGAGGACCAGGAGGCCC
AGGACCAGCTGGACCTCCAGGACCACCAGGAACCCCAGGATCAGGAGGTC
CACCAGGACCACCAGGACCACCAGGACCTCCAGGAGCCCCAGCTCCACCA
gctccaccaccaccaccagtCTGCTTACATCACTGCATGAAAATCTGTCC
AGCTCCAGCACCTGCCTGTGCGGCACCTCCACCtccacctccaccaccac
caATGTGCACCTGCTCGCCACCACCATGCTCATGTGGAAAATAGATTTCt
ttctaaaatcaaatttaGAGACACTCTGTTAAAATTGACTATGATAATAT
TACTCAATCTTGAGTTCTATTCCTTTTATGGACACTGCAAACTTaataaa
ttctattttttttgatgttcgtaaaattgtaaatttagatattttttgaa
agaattataCTTCCACTTTACACATTTACAcataaacaaaatctttctcA
ATTTAGCTTGGATATTTCCTTGATTAGTAAATTTACGTATCCTTTATATT
TTGCACGATTGCATGAAAgtattttggctgaaaaagtGATCAATCCATTA
ACCCTGGGAAGAGGTCTCAATATACTGCAAGTTAGGTAAAGTGAACTATT
ATAATTGTGGCCCTTAGAGTTAAGTTTTCCAGGCTTCCCAAATTTCGTTT
GATGAGTCAATAGGAGGGTGAGGGTGCAATATTGGAAAAGGTAAAACATT
TAGATAAAAGCAACtttgaacaaaaac Run BLAST on NCBI transcript from alignment at sc0000021:1009995..1015208+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002651 ID=TCONS_00002651|Name=TCONS_00002651|organism=Clytia hemisphaerica|type=transcript|length=5214bp|location=Sequence derived from alignment at sc0000021:1009995..1015208+ (Clytia hemisphaerica)
caCGGCTTATTAAATTTGCTCAATGGACCGTTTTATGGTTCATTGGTTAT
GCcattaaaatattatttgatcATCTTACCTTCTGTATAATACCTGTTTT
TAACGAGATCCATTcgaatttcttcactttcaaaaaagtttaatttctta
ACCGCTTTGTATCTTCTTCGAGCCGTCTTGACGAATCTGGTATATTCGAT
TCCAAGGTATTTGCTcatcatattttgatatttttacttGAGAATATTTC
AGATTTCATTTTCTCACAATACTGGTAGATTATGAATTGGAGATGTATCG
GAATAAAGCTTGGTTTNTCATTTGCTCACAATACTGGTAGATTATGAATT
GGAGATGTATCGGAATAAAGCTTGGTTTCCaatatcttttttaatttcaa
ggaaaaaatcttttgttattGGATCGGCCATTTGTTCTGATTCAATATCT
TCGAAAACATCACAATAGATCTCATACATTGCCTGAAATGTATCAAAGCT
GAAATCAGGGTATTGGTCATGATAATCTAGTAAAAGATAGAAAGATTATT
ActaagaaaacatttttaataatgatattctcttttattttctttacagA
TGGATAAACGATTTTTGATCTTACTGGTCGCCTTCGTGGCATACACATCC
GCTAAATCTGTTAGCCGTAAGTAtcttattttattcattttcaaatacag
ttgacgttctactattcgatgttctactattcgataggcttccttattcg
atgaaatttatagtccccgtcaacaagaaattatcataaacgacgctccc
ttattcaataagctcccttattcgatgaaaatccaagtCCCCTtcaagat
cgaattagagagcgtcaactgtacctAAATGCAAGAAATTCCTCTTCTTA
TTCTTGCTTTATTCCCAATCTAAAAATGTTTTGGATTTAGCGCGTATCGA
AAGACAACAATAAATCCCACAAAGTCGTGTACAAATTCGGATATTTGCAG
CGAAGAAGATATTGTACTTTGATGCAATATTTTAAAGTTGCTTTTACGAT
ATTACGATAAGAATTACGATATTCATGGCTATTTTGCGCGCATTTCACAA
CATTTTTGGATACAGGATTTATATTACGcacgaaaaaatttgaatataat
tcgAAAGGACTCGAAAACTTAANACAGGATTTATATTACGcacgaaaaaa
tttgaatataattcgAAAGGACTCGAAAACTTAAACTAATCTTACATATC
TCCGGAGAAACCTTCCTTACTCAATTccaaaaaatccaaactttGTTATA
TGACAGTCATTACAACTTTGTGTGAAAGAGAAAGActtttgttccttttt
tcacaaaaattattGAAACTGCATGATGAGTCTATATAATATCCATTTGA
CATAATTTATCTAAcacatatatatatatttatagCATGTTAGATATTAT
ATTGTTGCATGGTTAAATGCACCTCAAAATCTGATTCTTTTGGCTTTAAA
CTGATAGAAAACTATATACCTATACACAATCATTTTATACAAAAACATGt
acagcaaaaatttcaaaacaatctgCTTTTAACCAGGAACAAAATGGTGA
CTCTGGTTCGATTTCATTGGATCATCATTTCATAGTTATAAACAAGCAAC
TTGCTGAAACAGGATGTGCCGCCACAACTTCAAAAATACTTACTAAAGTT
TCANTTCATTGGATCATCATTTCATAGTTATAAACAAGCAACTTGCTGAA
ACAGGATGTGCCGCCACAACTTCAAAAATACTTACTaaagtttcaatatt
ttttttggaaaagagaattaaaaaaagagcTTTACTCTTTCACACCTAAT
GGACATAATTTATTGTTCCTTTTAGGTGTGAAGAAATCTGCTAACCCATG
TGGCTGCACTCCTGCTCCAGCTTGTTGTGCCccaccaccacctccaccac
cagcCCCAATGTGTGCATGTGCCCCAGCACCAGCCCCATGTGGTTGTGCC
GGAGGAGCCGGTGCTGCCCCACCAATGCCAGGACCCCCAGGACCGGGAGG
ACCACCCGGAGCCCCAGGAGGCCCAGGAGCTATGGGACCCGCAGGACCTC
CAGGACCCCCAGGAGCCGGAGGATGCGGAGGACCACCTGGACCACCAGGA
CCACCAGGACCTCCAGGAGCACCAGCCccacctccaccaccaccacctcc
AATCTGTCTCCACCATTGTATGAAGATCTGCCCAGTCAGTGCCCCTGCCT
GTGCCCCACCACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCA
CCATGTGCCGCTCCACCATGTGCCCCACCACCACCATGCCCNGTGCCCCA
CCACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCACCATGTGC
CGCTCCACCATGTGCCCCACCACCACCATGCCCAGCACCTTGTCCACCAC
CAATGCCATGTGCTGCTCCACCATGCCCGCCACCTATGCCATGCCCACCA
CCATGTCCACCACCTTGCccaccaccacctccaccaccaaTGTGCACCTG
TGGGCCACCACCATGCTCCTGTGGAAAATAGAGTGGATAATAAAACGACG
CATTATTGTTAATAGATGTTAAATGAGTCATTTAAGCAAATCACTTTGCt
tgatttcaatttcaacaaaatcaaTCTCCAGAAGATACTTTCCTTGAGGA
ATGAATATGGAGATCTTAACTTTTACGTTAAGAAATTTCCTCATAAGATT
TTTCTTATGTATAATTTCAATAACTATACTATGAcacatatttttataaa
taaaagaatctctagaaaattataattgaattgaaaatattttctgcaTT
TACTTAACGATCCTTTCCAATCAATTTCTTACGAAGGTCTGAATTTCTAG
CTCTCTGAATAAACAATACATTTTTCCATAGTTAGGATATTTAGGGTgca
ttaaagtctattcacgataagtgggcactcttttttcttttacctataac
ttttgaaggaattcttcaatctttaaacATTTgctatcgttggagagata
tttgtgagtggaacaattttaaataaaaaagtctttaaaaaaataccaaa
aaacgaagatgaaaatgaagaagaaaaaaatgaagatcttttagagaaat
gctataactttcattttcacttgagaggttctttgatcttaggaggtcat
cactgtgaagaaattttactaaaatatttattcaatataaagttatgata
caaagttaataagtgattgaccccaaaaaacagcagataacagcagaaaa
cagcgtttttagacgtcaatcagcttataactttgtttgatatcttttcg
ctgaatgattatttttgatacattttttcacagtgatgacgttcgataat
caagggttcacttcagtgaaaatgagagttatagcacttttctacaagat
gttcatttttttcttcttcattttcatcttcatttttagaatttttttaa
agacttttttatttcaaattgttccactcacaaatgtctctccaacgata
cccaatttataaagattaaagaattccttCGAAAgatataggtaaatgaa
aaaagagtgcacacttatcgtgaatagactttagtttcgtattcatttga
aatcaaaaaattacacTCCTGTCAATTTTACGCTGCAAGATTGCCAGATT
TAAAGTCATATGCAACATATTTGGATTTTTCAATTTGCAAGTTTTAagta
tatttatttataaattttgaaCTTTAGAAAAAAGCATGTTAGTTTTTCTc
cccaatagaccttttcataaattacgtcatgaacatcacttgcctcgttt
tgaaattattgccatggtgattaagtCCCAGTGGATTattttaaaactac
tttctatttataaaaaaataatttgatgtctAAAGGGATATAATTACCat
agtaattgtttgaatacgaagcaagtgatgttcgtgacgtaatttataaa
aaggtctattaaataGAAATTGTTTTTACTATTATATGAGGCATGAAAAG
TAATGAACAATGCACGATGTATGTAAAATCGAATTCGGTGATCTACGCTC
CTTATCAAATACtcttaaaaaactttaaacaaaaattgaaacaaaaattg
aaaaaaaaaagatttagcatcaaatattttgattttttaattttctactt
ttcatcGTAGATGGAGATAAACGATCACCCTGTTCGTGTTCAGCACCGCC
ATGTTCATGCCAAGAACTCCCAATGCAAACCATCACTATCCCAATGGCTG
CCCCATGTGCACCACCAGCCTGTGCCCCACCACCACCAGCTTGTGCCCCA
GCATGTATGCCAGCATGTGCACCAGGATGTGGTGCCGGTGGAGCCGGAGC
CGCTCCACCACCACCACCACCACCACCAGTCCCAGGACCACCAGGATCTA
TGGGACCAGTCGGACCACCAGGAGGACCAGGAGGCCCAGGACCAGCTGGA
CCTCCAGGACCACCAGGAACCCCAGGATCAGGAGGTCCACCAGGACCACC
AGGACCACCAGGACCTCCAGGAGCCCCAGCTCCACCAgctccaccaccac
caccagtCTGCTTACATCACTGCATGAAAATCTGTCCAGCTCCAGCACCT
GCCTGTGCGGCACCTCCACCtccacctccaccaccaccaATGTGCACCTG
CTCGCCACCACCATGCTCATGTGGAAAATAGATTTCtttctaaaatcaaa
tttaGAGACACTCTGTTAAAATTGACTATGATAATATTACTCAATCTTGA
GTTCTATTCCTTTTATGGACACTGCAAACTTaataaattctatttttttt
gatgttcgtaaaattgtaaatttagatattttttgaaagaattataCTTC
CACTTTACACATTTACAcataaacaaaatctttctcAATTTAGCTTGGAT
ATTTCCTTGATTAGTAAATTTACGTATCCTTTATATTTTGCACGATTGCA
TGAAAgtattttggctgaaaaagtGATCAATCCATTAACCCTGGGAAGAG
GTCTCAATATACTGCAAGTTAGGTAAAGTGAACTATTATAATTGTGGCCC
TTAGAGTTAAGTTTTCCAGGCTTCCCAAATTTCGTTTGATGAGTCAATAG
GAGGGTGAGGGTGCAATATTGGAAAAGGTAAAACATTTAGATAAAAGCAA
Ctttgaacaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002651-exon-sc0000021-1491911889:1009995..1010200 | TCONS_00002651-exon-sc0000021-1491911889:1009995..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002651-exon-sc0000021-1510915933:1009995..1010200 | TCONS_00002651-exon-sc0000021-1510915933:1009995..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002651-exon-sc0000021-1575043694:1009995..1010200 | TCONS_00002651-exon-sc0000021-1575043694:1009995..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002651-exon-sc0000021-1491911889:1010594..1010660 | TCONS_00002651-exon-sc0000021-1491911889:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002651-exon-sc0000021-1510915933:1010594..1010660 | TCONS_00002651-exon-sc0000021-1510915933:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002651-exon-sc0000021-1575043694:1010594..1010660 | TCONS_00002651-exon-sc0000021-1575043694:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002651-exon-sc0000021-1491911889:1014205..1015208 | TCONS_00002651-exon-sc0000021-1491911889:1014205..1015208 | Clytia hemisphaerica | exon |
| TCONS_00002651-exon-sc0000021-1510915933:1014205..1015208 | TCONS_00002651-exon-sc0000021-1510915933:1014205..1015208 | Clytia hemisphaerica | exon |
| TCONS_00002651-exon-sc0000021-1575043694:1014205..1015208 | TCONS_00002651-exon-sc0000021-1575043694:1014205..1015208 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:1009995..1015208 + |
Blast
The following BLAST results are available for this feature:
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