|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002647 ID=TCONS_00002647|Name=TCONS_00002647|organism=Clytia hemisphaerica|type=transcript|length=212bp
acaaattttgagacttagaatttgtttacatttacaCTTGCACCACTTTC
TATTACATTGACTGACTTGTCTATATGTTGGTTTGTGTACACATTGGCTT
TACTTTTCACCAGCTCACACATGTGGCCAATTTGTTTGAACCTCTTGTAA
TCACATGAATGAAAGAAAGATAGCTGACATGCTGATCTAAATCATTTTGC
AAAGTTACAAAC Run BLAST on NCBI transcript from alignment at sc0000021:868787..872884+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002647 ID=TCONS_00002647|Name=TCONS_00002647|organism=Clytia hemisphaerica|type=transcript|length=4098bp|location=Sequence derived from alignment at sc0000021:868787..872884+ (Clytia hemisphaerica)
acaaattttgagacttagaatttgtttacatttacaCTTGCACCACTTTC
TATTACATTGACTGACTTGTCTATATGTTGGTTTGTGTACACATTGGCTT
TACTTTTCACCAGCTCACACATGTGGCCAATTTGGTAAGTTTTTCAGCCA
CTCCTTTTGCTTTTCTGTTTGCATGGCcacattttgttttctttgccTCA
TCAGCTCATCAGTCCAGTGTTGAGGCACAACACCTGGACTTAAGTTAAGT
TAGGTTAAGTTTTTCTTAGTTTTCTTTACACTATATTTTGATATCTTGAT
AGCTATACATCTTCCCAGATGCCTTTCTTACAGGATCTGGACTTTTGTCA
TATTCTGGACTTAGTCATTTTTCACATTCTAGTCTTAGAATTtagttctt
ttttatttatttgtttctaGTTACTACGGTGGCCGAGAACTGCACAAATA
CTATTTTTCGATACACAGGTTCAAAAAAtacgcaaaaaaaataaaaagta
cgcaaaaaaaacaaaaagtacgcaaaaaaaaataaaaactacgcaaaaaa
aataaaaaactacgtaaaaaaaataaaaataaaaagtacgcaaaaaaaat
aaaaagtacgtaaaaaaataaaagtatgcagaaaaaataaaaagtacgca
aagaaaataaaaagtacacaaaaaaaatcttctagCCGCCCGTCGTCCGG
GCCGAGAAGACCGGCTGAGAAGGGATCTGGGCCAGAATTTGCACGCTGAG
CTTCCCCGTTGAGGCTCCATAGGCACACACGAACTTCACTGTAGAGACTT
TGTCTCGTTTACttttaagttttcatttttatcctGTTATTTGTTGTAAG
GTTATCGAGTCCCGTGCTAGCCACTTTCGTTTTGTTGTGCATCGTGTTTT
CACTCGACCGCCATTTCTTAGAAGTTATTTATACCTAAATATGGTGGTCA
TTTTCACCAAAATGAAGCTTCATTTTCACCAAAATGAAGCTAGCATAAGT
GTCGCAGCGTGAGCGTGCGTCAGATTCAAGTCGAAAGTGGTTATAAAAAG
TGTTCTAGCCATTTAtatagaaaggacgcaacctacacccattagtgacc
ttttacaaaaaaaatgaagttcatagctgcttccaatttttcagttagtc
gaggaacgtgtccctgactgactttaaccaaaatgtggaaaagtggaatt
cgggctttctggtcAACTTGAATATGGGgttgggggtggaggatataaca
ttttttggaaattcctCTTTCAGACATTCTGACGTTTGACCGGACAGCAG
GACAAACCCcgctggacattcaaaattaccctcaaacggAGCAAAATAAC
CACCAGACAGACAAAGTAAGTCTACCCCACaaatgtagatttttcactac
cccggACActttatcctccacccccatgtatgAACATTTTCTGTAAGAGC
CTAATATGTTTTCGACTATTCTTAGGCTCTAAATAAACGGCCCCCACTTG
ttaacttttcgaaaatttttcaaccccctccccccggactttattaggac
cccccgtttattaatttttcagaatattttcagctgtcaaaaagAAGGCC
Cttcatttttatctaaaaagcctgattttagcctatttttaccttatttt
ttggTTTTCAGAAGTACGATTTctaaccccccggcaattaggtcccccca
gTTTATTagaatcttgaaaattttccaacccatccccgtatatttggaac
ataaGAGTACCATCGTTAGCTTATCATAATTTGAAACTTTGATATCGTCA
TAAGTATCGTCAAGCTATCAAACCATTACTGCCCCACCCTCAAGAGGGAG
TAGTCGAGGAGGAAGTCTCTTTGCTTCGCGTAAAGAAATCGTAGGGGATA
GGCTTTAAAAAATTTCGTTCGTTTCGTTTCGCCGTCTTAAGTAAGtatcg
agtttatgtatcggaggatatcgagggcgacggtatgtgaaatgattaaa
aacaaagttgatagTTGATGTATACTATaccgcctttgctcacctaaaca
gacaaaggtattttggtgtttttaccgtcgccgagcaaagtggacggtga
atttggagacatgtcaactttgtcttataccgtccccctcgaatTATCTC
GAATAGAAATACATAAGCTCGCTAGTGATGAATGTGGGGAGGATGAGGGA
ATGAACGGAATACGTGAAGAAAGGGAATGTGGGACAAAGGGAATACGGGG
CGGGATAAGGGTAATAAAATTATCTCCTTTGTGTAGCAGACAAGATACGT
TGGAAGAAGCTTTATGTATGGACCCGGTCCAAGCCTTCTTCGGTCCGCTG
Taggatttttttgtacatttttattttatatttttttgtgtactttttat
tttcttagcgtactttttattttctttgcgtagttttattttttgcgtaa
tttttattttttttgcgtacttcttattttttttgcgtacttttattttt
ttgcgtactttttattttttttgcttacttctttttttttgcgtactttt
tattttttctacgtacagtatatggcccccaaaacggagacggcccccaa
aacggaggttttcattaaaatgaagattctgacttgtagatttatcagaa
ttaaacgatttttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Nttaaaggttttcatgcagcaaaaatttttgtaaaatctcttttcctcta
gatttgagagaaatttcaaatttgatcgccgttttgggggccacatactg
tagttttttattttttttgcgtactttttattttttttgcgtagtttttg
tttttttgcgtactttttatttttttcgcgtATTTTTTGAACCTGTGTAT
CGAAAAATAGTATTTGTGCAGTTCTCGGCCACCGTAAGTTACTTATGTTT
GTCTTAATTTTTATTTACAGTTTGAACCTCTTGTAATCACATGAATGAAA
GAAAGATAGCTGACATGCTGATCTAAATCATTTTGCAAAGTTACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002647-exon-sc0000021-1491911889:868787..868920 | TCONS_00002647-exon-sc0000021-1491911889:868787..868920 | Clytia hemisphaerica | exon |
| TCONS_00002647-exon-sc0000021-1510915933:868787..868920 | TCONS_00002647-exon-sc0000021-1510915933:868787..868920 | Clytia hemisphaerica | exon |
| TCONS_00002647-exon-sc0000021-1575043694:868787..868920 | TCONS_00002647-exon-sc0000021-1575043694:868787..868920 | Clytia hemisphaerica | exon |
| TCONS_00002647-exon-sc0000021-1491911889:872807..872884 | TCONS_00002647-exon-sc0000021-1491911889:872807..872884 | Clytia hemisphaerica | exon |
| TCONS_00002647-exon-sc0000021-1510915933:872807..872884 | TCONS_00002647-exon-sc0000021-1510915933:872807..872884 | Clytia hemisphaerica | exon |
| TCONS_00002647-exon-sc0000021-1575043694:872807..872884 | TCONS_00002647-exon-sc0000021-1575043694:872807..872884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:868787..872884 + |
Blast
The following BLAST results are available for this feature:
|
