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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002645 ID=TCONS_00002645|Name=TCONS_00002645|organism=Clytia hemisphaerica|type=transcript|length=2459bpRun BLAST on NCBI protein sequence of TCONS_00002645-protein >TCONS_00002645-protein ID=TCONS_00002645-protein|Name=TCONS_00002645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp MTGVTSEQDQDDPHQQIYRIVKGTMMLKAGRMGRPHFRQFRVSKDLKYLQRun BLAST on NCBI transcript from alignment at sc0000021:817801..834880+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002645 ID=TCONS_00002645|Name=TCONS_00002645|organism=Clytia hemisphaerica|type=transcript|length=17080bp|location=Sequence derived from alignment at sc0000021:817801..834880+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000021:817801..834880+ >TCONS_00002645 ID=TCONS_00002645|Name=TCONS_00002645|organism=Clytia hemisphaerica|type=CDS|length=30702bp|location=Sequence derived from alignment at sc0000021:817801..834880+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002645 vs. Swiss-Prot (Human)
Match: HERC4 (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.649e-49 Identity = 118/348 (33.91%), Postives = 190/348 (54.60%), Query Frame = 1
Query: 586 WGASTKGTLGHGEAEEELV--PRVVEALLGRDIRKIACGFEHTLAVSVTGEVFSMGSGRGGKLGDNIHDRYMPLKVGSLSEKKVVALSCSELHSAVVTSTGELYSFGR-TGPRLGYSIEGRKQEIPKQVDALKKHFIVKVSCGLKYTLALTKEGQVFAFGENGFGQLGLGHRDECK---TPTKIKAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTGDTESRDSPHEAPSTFWNEEIQDIKCGGKHTVVLSCTGKIYCFGDGQYGQLGVNLRPTQTNLSTPCNVPIPSKVVQVDCGIAHTAA-VTDNGTLYTWGKGSGARLGHSDHRDRTTPTLVESLAY 1608
WG ++ G LG G +EE+V PR + + + +R + CG HT+ V G V++ G G+LG R P +V +L + +VA+SC E H+ + G++Y++G + +LG +P+ + +L IV+V+CG ++LAL+K +VF +G+N +GQLGLG +CK +P +K+ G+ Q++AG H+ +T +G ++ WG N FGQLG D R P+ S +++I I CG HT L+ G ++ FG G YGQLG N + N + + S V ++ CG HT+A V +G +Y++G G +LG +R +P V+ Y
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHE-KSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLG--TDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKS-LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFEL-MGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWY 346 HSP 2 Score: 157.532 bits (397), Expect = 2.401e-39 Identity = 103/292 (35.27%), Postives = 155/292 (53.08%), Query Frame = 1
Query: 796 PLKVGSLSEKKVVALSCSELHSAVVTSTGELYSFGRTGPRLGYSIEGRKQEIPKQVDALKKHFIVKVSCGLKYTLALTKEGQVFAFGENGFGQLGLGHRDEC-KTPTKIKAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTG-DTESRDSPHEAPSTFWNEEIQDIKCGGKHTVVLSCTGKIYCFGDGQYGQLGVNLRPTQTNLSTPCNVPI--PSKVVQVDCGIAHTAAVTDNGTLYTWGKGSGARLGHSDHRDRTTPTLVESLAYKNVQSIACGAHHTAASV 1659
P K K+V + C H+ V G +Y+ G LG + ++ P+QV AL IV VSCG +TLAL +GQV+A+G + GQLGL +EC + P IK+ ++I Q++ G H+ A+++ +V+ WG N +GQLG G D + + SP S +Q + GG H+ VL+ +G I+ +G ++GQLG+N + + P + K+V + CG HTAA+T G ++T+G G +LGH+ P V L V IACG HT+A V
Sbjct: 25 PRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCND--LGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQ-VAAGGAHSFVLTLSGAIFGWGRNKFGQLGLN---DENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIACGRQHTSAFV 310 HSP 3 Score: 137.502 bits (345), Expect = 4.908e-33 Identity = 89/293 (30.38%), Postives = 154/293 (52.56%), Query Frame = 1
Query: 577 IYTWGASTKGTLGHGEAEEELVPRVVEALLGRDIRKIACGFEHTLAVSVTGEVFSMGSGRGGKLGDNIHDR--YMPLKVGSLSEKKVVALSCSELHSAVVTSTGELYSFGRTGP-RLGYSIEGRKQEIPKQVDALKKHFIVKVSCGLKYTLALTKEGQVFAFGENGFGQLGLGHRDECKTPTKIKAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTGDTESRDSPHEAPSTFWNEEIQDIKCGGKHT-VVLSCTGKIYCFGDGQYGQLGVNLRPTQTNLSTPCNV 1443
+YT G + G LGH ++ ++ P V AL ++I ++CG HTLA++ G+V++ G G+LG + +P + SLS+ ++V ++C HS ++ E++ +G+ +LG + +KQ P+ + +L ++V+ G ++ LT G +F +G N FGQLGL ++ P +K+ +I I G +H A+T+ G V+ +G +GQLG T +P + + +I CG +HT + +G+IY FG G GQLG + +N +P V
Sbjct: 55 VYTCGCNDLGQLGHEKSRKK--PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKV-FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTG---STSNRKSPFTV 341 HSP 4 Score: 96.6709 bits (239), Expect = 2.726e-20 Identity = 69/219 (31.51%), Postives = 108/219 (49.32%), Query Frame = 1
Query: 1042 VFAFGENGFGQLGLGHRDE--CKTPTKIKAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTGDTESRDSPHEAPSTFWNEEIQDIKCGGKHTVVLSCTGKIYCFGDGQYGQLGVNLRPTQTNLSTPCNVPIPS--KVVQVDCGIAHTAAVTDNGTLYTWGKGSGARLGH-SDHRDRTTPTLVESLAYKNVQSIACGAHH----TAASVIRAW 1671
+ +G FGQLGLG DE P K F R+ + G+ H V ++G V+ G ND GQL G +SR P + + + I + CG HT+ L+ G++Y +G GQLG L ++ + P N+ S ++VQV CG H+ A++ ++ WG+ +LG +D + +T+P L++SL +A G H T + I W
Sbjct: 1 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQL--GHEKSRKKPEQVVA-LDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214 The following BLAST results are available for this feature:
BLAST of TCONS_00002645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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