TCONS_00002637 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002637
Unique Name	TCONS_00002637
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	874

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000021:617917..622719+
coding sequence from alignment at sc0000021:617917..622719+

transcript sequence

>TCONS_00002637 ID=TCONS_00002637|Name=TCONS_00002637|organism=Clytia hemisphaerica|type=transcript|length=874bp
CTTCATACCACTTCGGCTTCTTGTTGCTTATCGTTTTCAGTCAAGGTTTT
TGTAttaattttcagataaaataaagttttaaagatGTTGGCGTTGAGAA
GTTTGTTGGCAATTTTGACGAtcacaacaaatttgttttctaCATCCTTT
TCATCTATCATCGATGAAGAAGCACAGAAGATAAAGAAAGCAGACAATCA
AAAAACTCACCCAAAGATATTGGAATTCAACAAAAACAGTCAAAACAGAC
CAACAAAATGCCAAGTATGCCGTATTATGGTACACGAAATAGAACTGGAG
TTGAATAAGACGAAGAAtagcaaacaaaaaattcgttTCAGTAATAGCTT
GGAtggaagaaagaaagaaaacttaTCTTACAAAACTTCaGAGTTGAGAC
TCATGGATGTTTTGGACATGGTATGTGGAAATGTGGATTACTATCGAGTC
ATTGCTGGTCCACAATTCCCTTATCTAAGGAACGtgaaaaGTATGTATAG
AATCGAACTTGAAAAGGCGATGAAAGAAAGTGGTGTTGGTTTAACTTTGG
ACGCTCCTCCCCAGACTGTTGATGACCCGACCGCTGAAATAAAACGATTG
CATTTCGAGTGTGTTCAAATGGTAGAAGAATATGAAGAAGAAATATTAGA
ATGGTTCAAAACTAATCAAGATATCCCACCAATCGATTACATATGTAGAG
AACGAGTGTTGCAACATGGCACGAAAGaTTGTCTGGATGCGACAACAGAG
AGTCCCGAATGGGGAAGTCAAATCGTTAAAACCACTACTGATCAAGGAAT
ATATAATCTTCTAAAGCATAGTAGGAGTGAGCTGTAAATTTTATCATTAA
CTATTGTAACTTTAGAATTCCgat

Run BLAST on NCBI

protein sequence of TCONS_00002637-protein

>TCONS_00002637-protein ID=TCONS_00002637-protein|Name=TCONS_00002637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MLALRSLLAILTITTNLFSTSFSSIIDEEAQKIKKADNQKTHPKILEFNK
NSQNRPTKCQVCRIMVHEIELELNKTKNSKQKIRFSNSLDGRKKENLSYK
TSELRLMDVLDMVCGNVDYYRVIAGPQFPYLRNVKSMYRIELEKAMKESG
VGLTLDAPPQTVDDPTAEIKRLHFECVQMVEEYEEEILEWFKTNQDIPPI
DYICRERVLQHGTKDCLDATTESPEWGSQIVKTTTDQGIYNLLKHSRSEL

Run BLAST on NCBI

transcript from alignment at sc0000021:617917..622719+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002637 ID=TCONS_00002637|Name=TCONS_00002637|organism=Clytia hemisphaerica|type=transcript|length=4803bp|location=Sequence derived from alignment at sc0000021:617917..622719+ (Clytia hemisphaerica)
CTTCATACCACTTCGGCTTCTTGTTGCTTATCGTTTTCAGTCAAGGTTTT
TGTAttaattttcagataaaataaagttttaaagatGTTGGCGTTGAGAA
GTTTGTTGGCAATTTTGACGAtcacaacaaatttgttttctaCATCCTTT
TCATCTATCATCGATGAAGAAGCACAGAAGATAAAGAAAGCAGACAATCA
AAAAACTCACCCAAAGATATTGGAATTCAACAAAAACAGTCAAAACAGAC
CAACAAAATGCCAAGGTCAGTATAGAATTcagaatgtaaaaaaaaacttt
ctacgCTACAGCCATAAAAATAAGGATACAATgcactctcgcttattcga
aattttattattcgaacctttctttaattcgaacttgtttccagtccccA
CCAAGGAGAAAGCCTCTTAAAATACTTACGAACTTATTTGAATTTCTCTT
TAATAAAACACACAAGATTCtccgttcgagttcgaaatagcgagagtcaa
ctgaaCTCCATTAAAGACCCATAAACTTTGTTAGACGCTTGTGGGTTTTA
GTTTAAGTTCAAAATTTTCCGAACGCACCCTCAATACAAGGTGGTCCCAA
TCTAAATACTTACGCTGGACACTTAAGAAAAGCGACCTACCTAAGGTGCA
GCCCTTAAAGGTACTTCTTTGCAGTGTAAGAATTGAATTTAAAAGCCCAC
CTCGGGTTTTTACCCACCTACTTCCGATACCTAAAATATCTTTATCAACG
GAATCTCTTGCTAAGACTATTGGAAATAAAATCAAATTGTAAACAATAGA
TTGGGCTAtcccagaaatagtctgtatcCCCCATGTCGAGGAAGTGTGAC
GTCCAgtgtggtctggaaaataaaaaaacctaaggggtctggtttttcga
gtgtaaaaatccagtgtggtcagtaaaatgagttggaaaatccagggtgg
tcagtaaaatgagttagaaaatccagggtggtcattAAAATGAGTTAGAA
AATCCAGCGTGGTCAGTAAAACGAGttggaaaatccagggtggtcagtaa
aatgagttagaaaatccagggtggtcagtaaaatgagttggaaaatccag
ggtggtcagtaaaaagAGGTAGAAAGTCCAGGGTGGCCCAAAAAAGAGAG
gagaaaaaatccaaggggtcttgaaaaattgaaataaaatccaGTGGGTC
CAAAAGAGACCTCTTCAACATAGGGGTACAAGTTTTTTCTGAAATAGCCT
TACTGGTTTTGGACTGATGAGCTGACTCGAAATTGCTTGTTTTCATTTAG
TATGCCGTATTATGGTACACGAAATAGAACTGGAGTTGAATAAGACGAAG
AAtagcaaacaaaaaattcgttTCAGTAATAGCTTGGAtggaagaaagaa
agaaaacttaTCTTACAAAACTTCGTAAGTTTGTTTGCTTGTCATATTCT
ACATCTACGGTGCCATTTTGGAGAACGACCACCCAGCTTTCTGGTGTCAG
CTTCAATGGATACATCAATAATGTCTTGTGATGCCATTAATAGGATCTAG
AATAAAAATAATCATTGAAATTATCCTGTTTTAGTAACTCGGTGAAAATT
TTACAGTCCGAAGAAGTAAAATTACGGAGCTGAAAGCTTGAACCAATGGG
GATTTCCAAAATAATTTTGTCTTTTCTAGTGAGGAAGAGAGTTAAATGTA
ATTTGAACTATAATGGGTAAAATTTTagttatttttccattttttccaag
TGTATAAGACTTAAGGTGGTCAATTCATCTtggcttttcaaaaaaaactc
tttaaaactttttaccccctagaGAGTTGAGACTCATGGATGTTTTGGAC
ATGGTATGTGGAAATGTGGATTACTATCGAGTCATTGCTGGTCCACAATT
CCCTTATCTAAGGAACGGTAAGTCATGCAATAATTTAAtacctaaatttt
taatatcTAGAATGAGGCTTTGTGTTGCGAGAATCTCAGTAATTCGACAA
TAAGACCATTCACGTTCATGTCATTCATAAGACAtattcagacgttacgg
tttcgtatgACTCCGGTATGGTTTCCGTGATTGAGTGTGTTCTTATTAGT
tttggaacgtttcggagcaagaaaatggAGCAGTTCCATTCCGATGAAAA
TTTGTAACGTCTTCGTTTCTAAACGTTTCGagtttgacgttcacacttgc
gATACGGAACTATAACGTCTGAACATATAGTCTAAGAGAATGGTCCTCTC
TCCGTGTAATTGGCACCTCAAAGATCGAAATAGAGAGAAAAGGTTGATAA
GTCATTGGCGCCTTGAAGAGTGAAGTGGAAAGAAAGGCTTAAAAAATGTA
TCCTTTTGACATCCCACGTATTTCAGAATGGATATGAAGGCATAACATTT
TCCAGTTTAAATCCTTCAGTACTTTAGAAAACTAAAATTTAAGGACTTCT
TCAAAATCACGGTGCGTCAACTTCAAATACAATTTTGGGTCAAGTTTGGG
TGCGgtggaaagctcttttcaagATCTATCAGCGTGCTGCTTTATGTATT
AGGTCCTAAATCAAAATTACAGGTAGCCGGAAGAAtcattcaaaatgaaa
gaaatcttttcttttgatGGCTGACTACGagtaaatgttgtttttttttc
agtgaaaaGTATGTATAGAATCGAACTTGAAAAGGCGATGAAAGAAAGTG
GTGTTGGTTTAACTTTGGACGCTCCTCCCCAGACTGTTGATGACCCGACC
GCTGAAATAAAACGATTGCATTTCGAGGTATTTGATATTCACCATATAAT
CTTGAATCTCTTCATGTCTCGTCATAATTTTTTATCCAAATACGACGAAT
TAATTTTAAGTGAGCTCGCCAGCCAAGAAAAATCAACCAAAGATTAGATA
AGCATTATTGATATGTTACTTTGCTGGAAAACCAAGTTCAGTTGACGCTC
TATAATTCGATTTGCGAGGGGAAtctgattttcatcgaataagagagcat
atcgaatagtagaacgtcgtatttgagagtttcttgttaacAGGGACTtt
cgattttcatcgaatagtagaacgagaaattagagagcgtcaactgtaat
atTATATTACTTTAGACAGTCTACGATTATCGATTGTTTTTTATGTTATT
ACAATAACCGCGAAAACCGGCAGTTATCTGTGAACAGAACAGAACAAACG
AATAAGGAGGGGGTATtcaaagggataatcagatggtttgagatatttag
attaCAGAAACCCTCTGTGGTCCTTAgtaaaaagtatttttgtgtaacaa
tttttcattttgaaaatgggttctgacacggttcttacgttgaaattctg
ttgttttcatcctaaaagccaaaaacttgtaacttaaatatctcgACTTG
AGGAAAAagttaggcaaaaatattttgagatttttctcaggacaatagaa
ggatcccacatgccaaattaaaaaccatctgattatccctttaaagcaTT
TGAACCAAGATATGGCATTTATTCAAGATATTGTTACAGTTAGGCTTGAA
AACGAAAATTGGTTAACaaaattgactttttgaaatCCCCATCGCATTTT
CTTCATCACAGTGTGTTCAAATGGTAGAAGAATATGAAGAAGAAATATTA
GAATGGTTCAAAACTAATCAAGATATCCCACCAATCGATTACATATGTAG
AGAACGAGTGTTGCAACATGGCACGAAAGGTATGTTGAGAAAGTTCGGTT
gggacaaattttccccaaaacttactattcgaggattagccataaattta
tgccaaacttatatctaccAACTCACACTTACGTCCGACTACCtgattgg
tttctacccctaatctaggccataggcaaatggaaagcTAAATTGATTAC
ATATGTAGAGAACGAGTGTTGCAACATGGCACGAAAGGTATGTTGACAAT
AAGTTATGGGTCTTTAGATCTTATACTCTCTCCAGCCCACTGGTTGGTCC
TTTCCAGACCCAACCATTAACCTTTCATAACTTCGAGGCTAGCGCCTAGG
AGTTTTTGTATTACATATTAAGAGTACATTTTTTCAGTTCAGAAAGTGCA
AATCCATGGATAAGTGATAATGATAAAGTCAATTTTACTGATTAGTCTTA
AAAGAAAGACGTCTTTTACTAAttgtgaaaaaagatttaaGTATTTATCT
AACTAATCAAATGAAGTctttcataaaaattcaaacatGGAATGTTCAGt
gattacacgtttttattctttattagaacccagtttatatgACGAACATt
cgttgaaaaattaagaacatcgtaagagcATGCCCAgtctcagtttggaa
aaaaatgacaagaaactacaattttttcctcttttcaagcagttttaacc
gaacttagggatgaATTTTCTAACATCGAGAGTctaatattgtccaaatt
ttaccaattttaagtgctctttattttgcatgatattgtcaatttagagt
agtctgaaaaattaagaacacgtttaagaacattttaggctgaaaactgc
caaaaaaataagcatatccaggctcagccaaattttagatgttctaataa
aaaaaaaaacgtgcagcAGAATCAACACTTTCTcaacttttttattattt
ttatagaTTGTCTGGATGCGACAACAGAGAGTCCCGAATGGGGAAGTCAA
ATCGTTAAAACCACTACTGATCAAGGAATATATAATCTTCTAAAGCATAG
TAGGAGTGAGCTGTAAATTTTATCATTAACTATTGTAACTTTAGAATTCC
gat

Coding sequence (CDS) from alignment at sc0000021:617917..622719+

>TCONS_00002637 ID=TCONS_00002637|Name=TCONS_00002637|organism=Clytia hemisphaerica|type=CDS|length=5271bp|location=Sequence derived from alignment at sc0000021:617917..622719+ (Clytia hemisphaerica)
atGTTGGCGTTGAGAAGTTTGTTGGCAATTTTGACGAtcacaacaaattt
gttttctaCATCCTTTTCATCTATCATCGATGAAGAAGCACAGAAGATAA
AGAAAGCAGACAATCAAAAAACTCACCCAAAGATATTGGAATTCAACAAA
AACAGTCAAAACAGACCAACAAAATGCCAAGTATGCCGTATTATGGTACA
CGAAATAGAACTGGAGTTGAATAAGACGAAGAAtagcaaacaaaaaattc
gttTCAGTAATAGCTTGGAtggaagaaagaaagaaaacttaTCTTACAAA
ACTTCaGAGTTGAGACTCATGGATGTTTTGGACATGGTATGTGGAAATGT
GGATTACTATCGAGTCATTGCTGGTCCACAATTCCCTTATCTAAGGAACG
tgaaaaGTATGTATAGAATCGAACTTGAAAAGGCGATGAAAGAAAGTGGT
GTTGGTTTAACTTTGGACGCTCCTCCCCAGACTGTTGATGACCCGACCGC
TGAAATAAAACGATTGCATTTCGAGTGTGTTCAAATGGTAGAAGAATATG
AAGAAGAAATATTAGAATGGTTCAAAACTAATCAAGATATCCCACCAATC
GATTACATATGTAGAGAACGAGTGTTGCAACATGGCACGAAAGaTTGTCT
GGATGCGACAACAGAGAGTCCCGAATGGGGAAGTCAAATCGTTAAAACCA
CTACTGATCAAGGAATATATAATCTTCTAAAGCATAGTAGGAGTGAGCTG
TAAatGTTGGCGTTGAGAAGTTTGTTGGCAATTTTGACGAtcacaacaaa
tttgttttctaCATCCTTTTCATCTATCATCGATGAAGAAGCACAGAAGA
TAAAGAAAGCAGACAATCAAAAAACTCACCCAAAGATATTGGAATTCAAC
AAAAACAGTCAAAACAGACCAACAAAATGCCAAGTATGCCGTATTATGGT
ACACGAAATAGAACTGGAGTTGAATAAGACGAAGAAtagcaaacaaaaaa
ttcgttTCAGTAATAGCTTGGAtggaagaaagaaagaaaacttaTCTTAC
AAAACTTCaGAGTTGAGACTCATGGATGTTTTGGACATGGTATGTGGAAA
TGTGGATTACTATCGAGTCATTGCTGGTCCACAATTCCCTTATCTAAGGA
ACGtgaaaaGTATGTATAGAATCGAACTTGAAAAGGCGATGAAAGAAAGT
GGTGTTGGTTTAACTTTGGACGCTCCTCCCCAGACTGTTGATGACCCGAC
CGCTGAAATAAAACGATTGCATTTCGAGTGTGTTCAAATGGTAGAAGAAT
ATGAAGAAGAAATATTAGAATGGTTCAAAACTAATCAAGATATCCCACCA
ATCGATTACATATGTAGAGAACGAGTGTTGCAACATGGCACGAAAGaTTG
TCTGGATGCGACAACAGAGAGTCCCGAATGGGGAAGTCAAATCGTTAAAA
CCACTACTGATCAAGGAATATATAATCTTCTAAAGCATAGTAGGAGTGAG
CTGTAAatGTTGGCGTTGAGAAGTTTGTTGGCAATTTTGACGAtcacaac
aaatttgttttctaCATCCTTTTCATCTATCATCGATGAAGAAGCACAGA
AGATAAAGAAAGCAGACAATCAAAAAACTCACCCAAAGATATTGGAATTC
AACAAAAACAGTCAAAACAGACCAACAAAATGCCAAGTATGCCGTATTAT
GGTACACGAAATAGAACTGGAGTTGAATAAGACGAAGAAtagcaaacaaa
aaattcgttTCAGTAATAGCTTGGAtggaagaaagaaagaaaacttaTCT
TACAAAACTTCaGAGTTGAGACTCATGGATGTTTTGGACATGGTATGTGG
AAATGTGGATTACTATCGAGTCATTGCTGGTCCACAATTCCCTTATCTAA
GGAACGtgaaaaGTATGTATAGAATCGAACTTGAAAAGGCGATGAAAGAA
AGTGGTGTTGGTTTAACTTTGGACGCTCCTCCCCAGACTGTTGATGACCC
GACCGCTGAAATAAAACGATTGCATTTCGAGTGTGTTCAAATGGTAGAAG
AATATGAAGAAGAAATATTAGAATGGTTCAAAACTAATCAAGATATCCCA
CCAATCGATTACATATGTAGAGAACGAGTGTTGCAACATGGCACGAAAGa
TTGTCTGGATGCGACAACAGAGAGTCCCGAATGGGGAAGTCAAATCGTTA
AAACCACTACTGATCAAGGAATATATAATCTTCTAAAGCATAGTAGGAGT
GAGCTGTAAatGTTGGCGTTGAGAAGTTTGTTGGCAATTTTGACGAtcac
aacaaatttgttttctaCATCCTTTTCATCTATCATCGATGAAGAAGCAC
AGAAGATAAAGAAAGCAGACAATCAAAAAACTCACCCAAAGATATTGGAA
TTCAACAAAAACAGTCAAAACAGACCAACAAAATGCCAAGTATGCCGTAT
TATGGTACACGAAATAGAACTGGAGTTGAATAAGACGAAGAAtagcaaac
aaaaaattcgttTCAGTAATAGCTTGGAtggaagaaagaaagaaaactta
TCTTACAAAACTTCaGAGTTGAGACTCATGGATGTTTTGGACATGGTATG
TGGAAATGTGGATTACTATCGAGTCATTGCTGGTCCACAATTCCCTTATC
TAAGGAACGtgaaaaGTATGTATAGAATCGAACTTGAAAAGGCGATGAAA
GAAAGTGGTGTTGGTTTAACTTTGGACGCTCCTCCCCAGACTGTTGATGA
CCCGACCGCTGAAATAAAACGATTGCATTTCGAGTGTGTTCAAATGGTAG
AAGAATATGAAGAAGAAATATTAGAATGGTTCAAAACTAATCAAGATATC
CCACCAATCGATTACATATGTAGAGAACGAGTGTTGCAACATGGCACGAA
AGaTTGTCTGGATGCGACAACAGAGAGTCCCGAATGGGGAAGTCAAATCG
TTAAAACCACTACTGATCAAGGAATATATAATCTTCTAAAGCATAGTAGG
AGTGAGCTGTAAatGTTGGCGTTGAGAAGTTTGTTGGCAATTTTGACGAt
cacaacaaatttgttttctaCATCCTTTTCATCTATCATCGATGAAGAAG
CACAGAAGATAAAGAAAGCAGACAATCAAAAAACTCACCCAAAGATATTG
GAATTCAACAAAAACAGTCAAAACAGACCAACAAAATGCCAAGTATGCCG
TATTATGGTACACGAAATAGAACTGGAGTTGAATAAGACGAAGAAtagca
aacaaaaaattcgttTCAGTAATAGCTTGGAtggaagaaagaaagaaaac
ttaTCTTACAAAACTTCaGAGTTGAGACTCATGGATGTTTTGGACATGGT
ATGTGGAAATGTGGATTACTATCGAGTCATTGCTGGTCCACAATTCCCTT
ATCTAAGGAACGtgaaaaGTATGTATAGAATCGAACTTGAAAAGGCGATG
AAAGAAAGTGGTGTTGGTTTAACTTTGGACGCTCCTCCCCAGACTGTTGA
TGACCCGACCGCTGAAATAAAACGATTGCATTTCGAGTGTGTTCAAATGG
TAGAAGAATATGAAGAAGAAATATTAGAATGGTTCAAAACTAATCAAGAT
ATCCCACCAATCGATTACATATGTAGAGAACGAGTGTTGCAACATGGCAC
GAAAGaTTGTCTGGATGCGACAACAGAGAGTCCCGAATGGGGAAGTCAAA
TCGTTAAAACCACTACTGATCAAGGAATATATAATCTTCTAAAGCATAGT
AGGAGTGAGCTGTAAatGTTGGCGTTGAGAAGTTTGTTGGCAATTTTGAC
GAtcacaacaaatttgttttctaCATCCTTTTCATCTATCATCGATGAAG
AAGCACAGAAGATAAAGAAAGCAGACAATCAAAAAACTCACCCAAAGATA
TTGGAATTCAACAAAAACAGTCAAAACAGACCAACAAAATGCCAAGTATG
CCGTATTATGGTACACGAAATAGAACTGGAGTTGAATAAGACGAAGAAta
gcaaacaaaaaattcgttTCAGTAATAGCTTGGAtggaagaaagaaagaa
aacttaTCTTACAAAACTTCaGAGTTGAGACTCATGGATGTTTTGGACAT
GGTATGTGGAAATGTGGATTACTATCGAGTCATTGCTGGTCCACAATTCC
CTTATCTAAGGAACGtgaaaaGTATGTATAGAATCGAACTTGAAAAGGCG
ATGAAAGAAAGTGGTGTTGGTTTAACTTTGGACGCTCCTCCCCAGACTGT
TGATGACCCGACCGCTGAAATAAAACGATTGCATTTCGAGTGTGTTCAAA
TGGTAGAAGAATATGAAGAAGAAATATTAGAATGGTTCAAAACTAATCAA
GATATCCCACCAATCGATTACATATGTAGAGAACGAGTGTTGCAACATGG
CACGAAAGaTTGTCTGGATGCGACAACAGAGAGTCCCGAATGGGGAAGTC
AAATCGTTAAAACCACTACTGATCAAGGAATATATAATCTTCTAAAGCAT
AGTAGGAGTGAGCTGTAAatGTTGGCGTTGAGAAGTTTGTTGGCAATTTT
GACGAtcacaacaaatttgttttctaCATCCTTTTCATCTATCATCGATG
AAGAAGCACAGAAGATAAAGAAAGCAGACAATCAAAAAACTCACCCAAAG
ATATTGGAATTCAACAAAAACAGTCAAAACAGACCAACAAAATGCCAAGT
ATGCCGTATTATGGTACACGAAATAGAACTGGAGTTGAATAAGACGAAGA
AtagcaaacaaaaaattcgttTCAGTAATAGCTTGGAtggaagaaagaaa
gaaaacttaTCTTACAAAACTTCaGAGTTGAGACTCATGGATGTTTTGGA
CATGGTATGTGGAAATGTGGATTACTATCGAGTCATTGCTGGTCCACAAT
TCCCTTATCTAAGGAACGtgaaaaGTATGTATAGAATCGAACTTGAAAAG
GCGATGAAAGAAAGTGGTGTTGGTTTAACTTTGGACGCTCCTCCCCAGAC
TGTTGATGACCCGACCGCTGAAATAAAACGATTGCATTTCGAGTGTGTTC
AAATGGTAGAAGAATATGAAGAAGAAATATTAGAATGGTTCAAAACTAAT
CAAGATATCCCACCAATCGATTACATATGTAGAGAACGAGTGTTGCAACA
TGGCACGAAAGaTTGTCTGGATGCGACAACAGAGAGTCCCGAATGGGGAA
GTCAAATCGTTAAAACCACTACTGATCAAGGAATATATAATCTTCTAAAG
CATAGTAGGAGTGAGCTGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001427	XLOC_001427	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002637-protein	TCONS_00002637-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000021	supercontig	sc0000021:617917..622719 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.755427	0.767505	3.3952	3.75646	0.472049	0.389806	0.648608	0.23095	1.80955	1.36337	1.09058	2.25944	6.62821	5.78799	0.964108	1.86938	9.43947	9.8878	3.63962	3.1421	4.7542	6.18559	0.804688	0.27325	0.20725	0.211155

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR021852	DUF3456

Blast

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BLAST of TCONS_00002637 vs. Swiss-Prot (Human)
Match: CNPY4 (Protein canopy homolog 4 OS=Homo sapiens GN=CNPY4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.410e-17
Identity = 52/181 (28.73%), Postives = 98/181 (54.14%), Query Frame = 1

Query:  223 EFNKNSQNRPTKCQVCRIMVHEIELELNKTKNSKQKIRFSNSLD-GRKKENLSYKTSELRLMDVLDMVCGNVDYYRVIAGPQFPYLRNVKSMYR-IELEKAMKESGVGLTLDAPPQTVDDPTAEIKRLHFECVQMVXXXXXXXXXWFKTNQDIPPIDYICRERVLQHGTKDCLDATTESPE 759
            E + +++  P+KC+VC+++  E++ EL++T  S++ +     LD G++K ++ Y  SE RL + L+ +C  +  Y V A  +   LR  K   + +   K + + GV + L  P +  D+P+ E+  L  +C  M+EE+E+ + +W+  +Q+ P  +++C   VL      CL  T    E
Sbjct:   26 EEDDDTERLPSKCEVCKLLSTELQAELSRTGRSREVLELGQVLDTGKRKRHVPYSVSETRLEEALENLCERILDYSVHA-ERKGSLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWDEPSVEVTYLKKQCETMLEEFEDIVGDWYFHHQEQPLQNFLCEGHVLPAAETACLQETWTGKE 205

The following BLAST results are available for this feature:

BLAST of TCONS_00002637 vs. Swiss-Prot (Human)

BLAST of TCONS_00002637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CNPY4	1.410e-17	28.73	Protein canopy homolog 4 OS=Homo sapiens GN=CNPY4 ...	[more]

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TCONS_00002637 (transcript) - C. hemisphaerica